Sed0000142 (gene) Chayote v1

Overview


Name	Sed0000142
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein TIC 214
Location	LG13: 18705453 .. 18706412 (+)
RNA-Seq Expression	Sed0000142
Synteny	Sed0000142

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATACAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGATATTAGTCTGGATACAGCAAAATAATTCTATTAGATCTAATGTACTTATTAGATCTAATAAGTACCTTGTGTCAGAATTGAGAAATTCGATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCATTCTTACTAAGAAACTGAAAGAAACCTCAGAAACGGAGCAAAGGGGGGAAAGCGAGAAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAGGAACAGGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCCACTTTAAAAGGACACGCTATCAAAATATAAAAAGACCAGTTTATGAAACTTCTTACCCTCCGGATGGAAATAAAGAAAATTCGAAGTTAGAAATAGATAAAAAAGAAAAATATCTCTTCTGGTTTGAAAACCTCTTGTGA

mRNA sequence

ATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCAATACCGTCACCCATTCTTACTAAGAAACTGAAAGAAACCTCAGAAACGGAGCAAAGGGGGGAAAGCGAGAAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAGGAACAGGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCCACTTTAAAAGGACACGCTATCAAAATATAAAAAGACCAGTTTATGAAACTTCTTACCCTCCGGATGGAAATAAAGAAAATTCGAAGTTAGAAATAGATAAAAAAGAAAAATATCTCTTCTGGTTTGAAAACCTCTTGTGA

Coding sequence (CDS)

ATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCAATACCGTCACCCATTCTTACTAAGAAACTGAAAGAAACCTCAGAAACGGAGCAAAGGGGGGAAAGCGAGAAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAGGAACAGGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCCACTTTAAAAGGACACGCTATCAAAATATAAAAAGACCAGTTTATGAAACTTCTTACCCTCCGGATGGAAATAAAGAAAATTCGAAGTTAGAAATAGATAAAAAAGAAAAATATCTCTTCTGGTTTGAAAACCTCTTGTGA

Protein sequence

MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPIPSPILTKKLKETSETEQRGESEKETDVEIETTSETKGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDEFHFKRTRYQNIKRPVYETSYPPDGNKENSKLEIDKKEKYLFWFENLL

Homology

[Close]

BLAST of Sed0000142 vs. NCBI nr
Match: QIT04190.1 (Ycf1 protein [Sechium edule])

HSP 1 Score: 270.8 bits (691), Expect = 8.5e-69
Identity = 176/319 (55.17%), Postives = 176/319 (55.17%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTG ITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 50  MEEGTEKKVSATTGLITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 109

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 110 FFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRYNNKMLFVTS 169

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 170 SFVGWLIGHILFMKWVGLILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFIT 229

[Close]

BLAST of Sed0000142 vs. NCBI nr
Match: YP_009526349.1 (hypothetical chloroplast RF19-like protein [Hemsleya lijiangensis] >AXU40502.1 hypothetical chloroplast RF19-like protein [Hemsleya lijiangensis])

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-66
Identity = 173/319 (54.23%), Postives = 175/319 (54.86%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 50  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 109

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 110 FFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSPMLVRLVNIAMFRCNNKMLFVTS 169

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 170 SFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYIRSNKYLVSELRNSMARIFSILLFIT 229

[Close]

BLAST of Sed0000142 vs. NCBI nr
Match: YP_009526361.1 (photosystem I assembly protein Ycf1 [Hemsleya lijiangensis] >AXU40477.1 photosystem I assembly protein Ycf1 [Hemsleya lijiangensis])

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-66
Identity = 173/319 (54.23%), Postives = 175/319 (54.86%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 50  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 109

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 110 FFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSPMLVRLVNIAMFRCNNKMLFVTS 169

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 170 SFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYIRSNKYLVSELRNSMARIFSILLFIT 229

[Close]

BLAST of Sed0000142 vs. NCBI nr
Match: YP_009753231.1 (Ycf1 protein [Trichosanthes truncata] >QIT06303.1 Ycf1 protein [Trichosanthes truncata])

HSP 1 Score: 261.5 bits (667), Expect = 5.2e-66
Identity = 172/319 (53.92%), Postives = 175/319 (54.86%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 51  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 110

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 111 FFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTS 170

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 171 SFVGWLIGHILFMKWVGLILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFIT 230

[Close]

BLAST of Sed0000142 vs. NCBI nr
Match: QWQ50148.1 (hypothetical protein RF1 [Cyclanthera pedata])

HSP 1 Score: 260.8 bits (665), Expect = 8.8e-66
Identity = 173/319 (54.23%), Postives = 174/319 (54.55%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 50  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 109

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 110 FFDYGSTTRNSMRNLSIQCVFLNNLIFPLFNHFILPSSMLVRLVNISMFRYNNKMLFVTS 169

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 170 SFVGWLIGHILFMKWVGLILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFIT 229

[Close]

BLAST of Sed0000142 vs. ExPASy Swiss-Prot
Match: Q0ZIW0 (Protein TIC 214 OS=Vitis vinifera OX=29760 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-50
Identity = 152/321 (47.35%), Postives = 159/321 (49.53%), Query Frame = 0


Query: 2   EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP-------------- 61
           EEGTEKKVSA TGFITGQLMMFISIYYAPLHLALGRPHTITVLALP              
Sbjct: 54  EEGTEKKVSAITGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHF 113

Query: 62  ------------------------------------------------------------ 121
                                                                       
Sbjct: 114 FDYGSTTRNSMRNLSIQCVFLNNLIFQLLNHFILPSSMLARLVNIYMFRCNNKMLFVTSS 173

Query: 122 ------------------------------------------------------------ 180
                                                                       
Sbjct: 174 FVGWLIGHILFMKWVGLVLVWIRQNPSIRSNVLIRSNKYLVSELRNSMARIFSILLFITC 233

[Close]

BLAST of Sed0000142 vs. ExPASy Swiss-Prot
Match: Q14FA0 (Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.6e-48
Identity = 151/319 (47.34%), Postives = 157/319 (49.22%), Query Frame = 0


Query: 2   EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP-------------- 61
           EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP              
Sbjct: 54  EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHF 113

Query: 62  ------------------------------------------------------------ 121
                                                                       
Sbjct: 114 FDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSS 173

Query: 122 ------------------------------------------------------------ 177
                                                                       
Sbjct: 174 FVGWLIGHILFMKWVGLILVWIQQNNSLRSNKYIRSNKYLVSELRNSMARIFSILLFITC 233

[Close]

BLAST of Sed0000142 vs. ExPASy Swiss-Prot
Match: A4GYX4 (Protein TIC 214 OS=Populus trichocarpa OX=3694 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.6e-48
Identity = 151/319 (47.34%), Postives = 157/319 (49.22%), Query Frame = 0


Query: 2   EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP-------------- 61
           EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP              
Sbjct: 54  EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHF 113

Query: 62  ------------------------------------------------------------ 121
                                                                       
Sbjct: 114 FDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSS 173

Query: 122 ------------------------------------------------------------ 177
                                                                       
Sbjct: 174 FVGWLIGHILFMKWVGLILVWIQQNNSLRSNKYIRSNKYLVSELRNSMARIFSILLFITC 233

[Close]

BLAST of Sed0000142 vs. ExPASy Swiss-Prot
Match: A6MM95 (Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-47
Identity = 148/321 (46.11%), Postives = 162/321 (50.47%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 50  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 109

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 110 FFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYMFRCNNKMLFVTS 169

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 170 SFVGWLIGHILFMKWVGLVLFWIRQNHSIKSNVLIRSNKYLVSELRNSMARIFSILLFIT 229

[Close]

BLAST of Sed0000142 vs. ExPASy Swiss-Prot
Match: A6MMG9 (Protein TIC 214 OS=Chloranthus spicatus OX=13006 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-42
Identity = 142/321 (44.24%), Postives = 152/321 (47.35%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEK+VSATTGFITGQLMMFISIYYAPLHLALGRPHTITVL LP             
Sbjct: 50  MEEGTEKEVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLVLPYLLFHFFWKNHKH 109

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 110 FFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYMFRCNNKMLFVTS 169

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 170 SFVGWLIGHILFMKWVGLVLFWIRQNNSIRSNVLIRSNKYLVSELRNSMARIFRILLFIT 229

[Close]

BLAST of Sed0000142 vs. ExPASy TrEMBL
Match: A0A6H0EQ81 (Protein TIC 214 OS=Sechium edule OX=184140 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.1e-69
Identity = 176/319 (55.17%), Postives = 176/319 (55.17%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTG ITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 50  MEEGTEKKVSATTGLITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 109

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 110 FFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRYNNKMLFVTS 169

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 170 SFVGWLIGHILFMKWVGLILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFIT 229

[Close]

BLAST of Sed0000142 vs. ExPASy TrEMBL
Match: A0A346TMB2 (Protein TIC 214 OS=Hemsleya lijiangensis OX=210377 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 173/319 (54.23%), Postives = 175/319 (54.86%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 50  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 109

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 110 FFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSPMLVRLVNIAMFRCNNKMLFVTS 169

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 170 SFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYIRSNKYLVSELRNSMARIFSILLFIT 229

[Close]

BLAST of Sed0000142 vs. ExPASy TrEMBL
Match: A0A346TM87 (Protein TIC 214 OS=Hemsleya lijiangensis OX=210377 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 173/319 (54.23%), Postives = 175/319 (54.86%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 50  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 109

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 110 FFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSPMLVRLVNIAMFRCNNKMLFVTS 169

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 170 SFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYIRSNKYLVSELRNSMARIFSILLFIT 229

[Close]

BLAST of Sed0000142 vs. ExPASy TrEMBL
Match: A0A6H0EWE4 (Protein TIC 214 OS=Trichosanthes truncata OX=685060 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.5e-66
Identity = 172/319 (53.92%), Postives = 175/319 (54.86%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 51  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 110

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 111 FFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTS 170

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 171 SFVGWLIGHILFMKWVGLILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFIT 230

[Close]

BLAST of Sed0000142 vs. ExPASy TrEMBL
Match: A0A6H0ER70 (Protein TIC 214 OS=Cyclanthera pedata OX=198836 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.3e-66
Identity = 173/319 (54.23%), Postives = 174/319 (54.55%), Query Frame = 0


Query: 1   MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP------------- 60
           MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP             
Sbjct: 51  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKH 110

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 111 FFDYGSTTRNSMRNLSIQCVFLNNLIFPLFNHFILPSSMLVRLVNISMFRYNNKMLFVTS 170

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 171 SFVGWLIGHILFMKWVGLILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFIT 230

[Close]

BLAST of Sed0000142 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 107.8 bits (268), Expect = 8.9e-24
Identity = 116/302 (38.41%), Postives = 128/302 (42.38%), Query Frame = 0


Query: 2   EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP-------------- 61
           EEGTEKKVSATTGFI GQLMMFISIYYAPLHLALGRPHTITVLALP              
Sbjct: 55  EEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHF 114

Query: 62  ---------------------------------IPSPIL------------TKKLKETSE 121
                                            +PS +L             K L  TS 
Sbjct: 115 FDYGSTTRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSS 174

Query: 122 -------------------------------------------TEQRGESEKETDV---- 177
                                                      +E R    +   +    
Sbjct: 175 FVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFI 234

[Close]

BLAST of Sed0000142 vs. TAIR 10
Match: ATCG01000.1 (Ycf1 protein )

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-21
Identity = 111/293 (37.88%), Postives = 123/293 (41.98%), Query Frame = 0


Query: 2   EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP-------------- 61
           EEGTEKKVSATTGFI GQLMMFISIYYAPLHLALGRPHTITVLALP              
Sbjct: 55  EEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHF 114

Query: 62  ---------------------------------IPSPIL------------TKKLKETSE 121
                                            +PS +L             K L  TS 
Sbjct: 115 FDYGSTTRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSS 174

Query: 122 -------------------------------------------TEQRGESEKETDV---- 171
                                                      +E R    +   +    
Sbjct: 175 FVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFI 234

[Close]

BLAST of Sed0000142 vs. TAIR 10
Match: AT2G07739.1 (Ycf1 protein )

HSP 1 Score: 91.7 bits (226), Expect = 6.6e-19
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 2  EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP 48
          EEGTEKKVSATTGFI GQLMMFISIYYAPLHLALGRPHTITVLALP
Sbjct: 54 EEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALP 99

[Close]

BLAST of Sed0000142 vs. TAIR 10
Match: ATMG00370.1 (Ycf1 protein )

HSP 1 Score: 91.7 bits (226), Expect = 6.6e-19
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 2  EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALP 48
          EEGTEKKVSATTGFI GQLMMFISIYYAPLHLALGRPHTITVLALP
Sbjct: 54 EEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALP 99

The following BLAST results are available for this feature:

BLAST of Sed0000142 vs. NCBI nr


Match Name	E-value	Identity	Description
QIT04190.1	8.5e-69	55.17	Ycf1 protein [Sechium edule]	[more]
YP_009526349.1	2.3e-66	54.23	hypothetical chloroplast RF19-like protein [Hemsleya lijiangensis] >AXU40502.1 h...	[more]
YP_009526361.1	2.3e-66	54.23	photosystem I assembly protein Ycf1 [Hemsleya lijiangensis] >AXU40477.1 photosys...	[more]
YP_009753231.1	5.2e-66	53.92	Ycf1 protein [Trichosanthes truncata] >QIT06303.1 Ycf1 protein [Trichosanthes tr...	[more]
QWQ50148.1	8.8e-66	54.23	hypothetical protein RF1 [Cyclanthera pedata]	[more]

BLAST of Sed0000142 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0ZIW0	1.9e-50	47.35	Protein TIC 214 OS=Vitis vinifera OX=29760 GN=TIC214 PE=3 SV=1	[more]
Q14FA0	8.6e-48	47.34	Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1	[more]
A4GYX4	8.6e-48	47.34	Protein TIC 214 OS=Populus trichocarpa OX=3694 GN=TIC214 PE=3 SV=1	[more]
A6MM95	2.5e-47	46.11	Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1	[more]
A6MMG9	1.4e-42	44.24	Protein TIC 214 OS=Chloranthus spicatus OX=13006 GN=TIC214 PE=3 SV=1	[more]

BLAST of Sed0000142 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EQ81	4.1e-69	55.17	Protein TIC 214 OS=Sechium edule OX=184140 GN=ycf1 PE=3 SV=1	[more]
A0A346TMB2	1.1e-66	54.23	Protein TIC 214 OS=Hemsleya lijiangensis OX=210377 GN=TIC214 PE=3 SV=1	[more]
A0A346TM87	1.1e-66	54.23	Protein TIC 214 OS=Hemsleya lijiangensis OX=210377 GN=ycf1 PE=3 SV=1	[more]
A0A6H0EWE4	2.5e-66	53.92	Protein TIC 214 OS=Trichosanthes truncata OX=685060 GN=ycf1 PE=3 SV=1	[more]
A0A6H0ER70	4.3e-66	54.23	Protein TIC 214 OS=Cyclanthera pedata OX=198836 GN=ycf1 PE=3 SV=1	[more]

BLAST of Sed0000142 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01130.1	8.9e-24	38.41	Ycf1 protein	[more]
ATCG01000.1	3.2e-21	37.88	Ycf1 protein	[more]
AT2G07739.1	6.6e-19	97.83	Ycf1 protein	[more]
ATMG00370.1	6.6e-19	97.83	Ycf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 2..47 e-value: 1.4E-27 score: 96.1 coord: 48..177 e-value: 9.1E-44 score: 149.6
IPR008896	Protein TIC214	PANTHER	PTHR33163	PROTEIN TIC 214-RELATED	coord: 2..47
IPR008896	Protein TIC214	PANTHER	PTHR33163	PROTEIN TIC 214-RELATED	coord: 48..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..134
None	No IPR available	PANTHER	PTHR33163:SF13	PROTEIN TIC 214-RELATED	coord: 48..177
None	No IPR available	PANTHER	PTHR33163:SF13	PROTEIN TIC 214-RELATED	coord: 2..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000142.1	Sed0000142.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane