Sed0000136 (gene) Chayote v1

Overview


Name	Sed0000136
Type	gene
Organism	Sechium edule (Chayote v1)
Description	BHLH domain-containing protein
Location	LG11: 103900 .. 104454 (-)
RNA-Seq Expression	Sed0000136
Synteny	Sed0000136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTGTATTTTCCCTCCATGAGGCTGCTAGAGCCACTATCCTTCAATCCTTTATGCAATCTTTTCACCCCATTTACATTTCCCTTTGGTCTTATTTACCCCATCCTTCCAAGTAATTACTTTTTTTACTTAACATTTTCTGTAAAAAAATAACACAATCACATTTTTTTTTCTTAAAGTTTTTGGATTGATTTCCTTTTTGTTATAGTTGCTTGTTGAATCTTGATGGGTTGTTTCGAGAAGTTGATGATAAGCAACCAAGCAGTTCTTTGGTCAGTTTTGAACGGAGGTTTTTTAATGATTACAGGAATTTGATATTCAATGTGGAAAATGGGTAATATTCTCTTAACTTTTCTTTTATCTTTGTTTGGTTGATGAGAAAATCTTTCATATTTGAATTTAATTATGAACACAGCCTTGTTCCTGGTCATGCTTTCAAGAACAATATTTCCTTTTTAGAGGTTCATGAATCTATGCTTCAAACCCACTCTTCTTCTAAAATCCAAAGGCAATTTTATGATGTAAGTGTGATTTTTTTTAGGGATATATAG

mRNA sequence

ATGGATATTGTATTTTCCCTCCATGAGGCTGCTAGAGCCACTATCCTTCAATCCTTTATGCAATCTTTTCACCCCATTTACATTTCCCTTTGTTGCTTGTTGAATCTTGATGGGTTGTTTCGAGAAGTTGATGATAAGCAACCAAGCAGTTCTTTGGTCAGTTTTGAACGGAGGTTTTTTAATGATTACAGGAATTTGATATTCAATGTGGAAAATGGCCTTGTTCCTGGTCATGCTTTCAAGAACAATATTTCCTTTTTAGAGGTTCATGAATCTATGCTTCAAACCCACTCTTCTTCTAAAATCCAAAGGCAATTTTATGATGTAAGTGTGATTTTTTTTAGGGATATATAG

Coding sequence (CDS)

ATGGATATTGTATTTTCCCTCCATGAGGCTGCTAGAGCCACTATCCTTCAATCCTTTATGCAATCTTTTCACCCCATTTACATTTCCCTTTGTTGCTTGTTGAATCTTGATGGGTTGTTTCGAGAAGTTGATGATAAGCAACCAAGCAGTTCTTTGGTCAGTTTTGAACGGAGGTTTTTTAATGATTACAGGAATTTGATATTCAATGTGGAAAATGGCCTTGTTCCTGGTCATGCTTTCAAGAACAATATTTCCTTTTTAGAGGTTCATGAATCTATGCTTCAAACCCACTCTTCTTCTAAAATCCAAAGGCAATTTTATGATGTAAGTGTGATTTTTTTTAGGGATATATAG

Protein sequence

MDIVFSLHEAARATILQSFMQSFHPIYISLCCLLNLDGLFREVDDKQPSSSLVSFERRFFNDYRNLIFNVENGLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQFYDVSVIFFRDI

Homology

[Close]

BLAST of Sed0000136 vs. NCBI nr
Match: XP_038890719.1 (putative transcription factor bHLH041 isoform X2 [Benincasa hispida])

HSP 1 Score: 154.1 bits (388), Expect = 7.6e-34
Identity = 86/123 (69.92%), Postives = 95/123 (77.24%), Query Frame = 0


Query: 1   MDIVFSLHEAARATILQSFMQSFHPIYISLC--------CLLNLDGLFREVDD--KQPSS 60
           M+IVFSL +AARA  LQS MQSFH  YISL         CLLNLDG + E DD  KQPSS
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFYGEDDDRKKQPSS 60

Query: 61  SLVSFERRFFNDYRNLIFNVENGLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQFYDVS 114
           SL SFERR FN+Y  LIFN+EN LVPG+AFKNNISFLEV ES+LQTHSSS+IQRQFY  S
Sbjct: 61  SLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFY-AS 120

[Close]

BLAST of Sed0000136 vs. NCBI nr
Match: XP_038890720.1 (putative transcription factor bHLH041 isoform X3 [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 83/117 (70.94%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MDIVFSLHEAARATILQSFMQSFHPIYISLC--------CLLNLDGLFREVDD--KQPSS 60
           M+IVFSL +AARA  LQS MQSFH  YISL         CLLNLDG + E DD  KQPSS
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFYGEDDDRKKQPSS 60

Query: 61  SLVSFERRFFNDYRNLIFNVENGLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQFY 108
           SL SFERR FN+Y  LIFN+EN LVPG+AFKNNISFLEV ES+LQTHSSS+IQRQFY
Sbjct: 61  SLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFY 117

[Close]

BLAST of Sed0000136 vs. NCBI nr
Match: XP_038890721.1 (putative transcription factor bHLH041 isoform X4 [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 83/117 (70.94%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MDIVFSLHEAARATILQSFMQSFHPIYISLC--------CLLNLDGLFREVDD--KQPSS 60
           M+IVFSL +AARA  LQS MQSFH  YISL         CLLNLDG + E DD  KQPSS
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFYGEDDDRKKQPSS 60

Query: 61  SLVSFERRFFNDYRNLIFNVENGLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQFY 108
           SL SFERR FN+Y  LIFN+EN LVPG+AFKNNISFLEV ES+LQTHSSS+IQRQFY
Sbjct: 61  SLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFY 117

[Close]

BLAST of Sed0000136 vs. NCBI nr
Match: XP_038890718.1 (putative transcription factor bHLH041 isoform X1 [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 83/117 (70.94%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MDIVFSLHEAARATILQSFMQSFHPIYISLC--------CLLNLDGLFREVDD--KQPSS 60
           M+IVFSL +AARA  LQS MQSFH  YISL         CLLNLDG + E DD  KQPSS
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFYGEDDDRKKQPSS 60

Query: 61  SLVSFERRFFNDYRNLIFNVENGLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQFY 108
           SL SFERR FN+Y  LIFN+EN LVPG+AFKNNISFLEV ES+LQTHSSS+IQRQFY
Sbjct: 61  SLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFY 117

[Close]

BLAST of Sed0000136 vs. NCBI nr
Match: XP_023537999.1 (uncharacterized protein LOC111798884 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 75/115 (65.22%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MDIVFSLHEAARATILQSFMQSFHPIYISLC--------CLLNLDGLFREVDDKQPSSSL 60
           MD VFSL EA RAT L++ MQSFHP YI L         CLLNLD LFRE D  QPSSSL
Sbjct: 1   MDTVFSLDEAHRATFLRAIMQSFHPTYICLWSYLPHPSHCLLNLDALFREEDANQPSSSL 60

Query: 61  VSFERRFFNDYRNLIFNVENGLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQFY 108
            SFERR F++Y+ L+FNVEN LVPGHAF N+ISFLE+H+S+L  HSSS+IQ  FY
Sbjct: 61  GSFERRLFDEYKQLVFNVENNLVPGHAFNNSISFLELHQSLLHIHSSSQIQSHFY 115

[Close]

BLAST of Sed0000136 vs. ExPASy Swiss-Prot
Match: Q9LTS4 (Putative transcription factor bHLH041 OS=Arabidopsis thaliana OX=3702 GN=BHLH41 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06
Identity = 27/87 (31.03%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 26  IYISLCCLLNLDGLFREV-DDKQPSSSLVSFERRFFNDYRNLIFNVENGLVPGHAFKNNI 85
           + +S   L+++DG + E  ++   SSS  S  R  F++YR  +  ++NG VP  AF NN+
Sbjct: 4   LILSCSYLISMDGYYNEASEEPSSSSSSGSLARSLFHEYRQSVIPLQNGHVPSMAFMNNL 63

Query: 86  SFLEVHESMLQTHSSSKIQRQFYDVSV 112
            ++E+     Q  + +  QR FY + +
Sbjct: 64  PYVEIRPQESQRLAFNDTQRLFYQMKI 90

[Close]

BLAST of Sed0000136 vs. ExPASy TrEMBL
Match: A0A6J1FCH4 (uncharacterized protein LOC111444143 OS=Cucurbita moschata OX=3662 GN=LOC111444143 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.5e-31
Identity = 76/117 (64.96%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MDIVFSLHEAARATILQSFMQSFHPIYISLC--------CLLNLDGLFREVDDKQPSSSL 60
           MD VFSL EA RAT L++ MQSFHP YI L         CLLNLD LFRE D  QPSSSL
Sbjct: 1   MDTVFSLDEAPRATFLRAIMQSFHPTYICLWSYLPHPSHCLLNLDALFREDDANQPSSSL 60

Query: 61  VSFERRFFNDYRNLIFNVEN--GLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQFY 108
            SFERR F++Y+ L+FNVEN   LVPGHAF NNI FLE+H+S+L THSSS+IQ  FY
Sbjct: 61  GSFERRLFDEYKQLVFNVENNISLVPGHAFNNNILFLELHQSLLHTHSSSQIQSHFY 117

[Close]

BLAST of Sed0000136 vs. ExPASy TrEMBL
Match: A0A6J1DKX4 (putative transcription factor bHLH041 OS=Momordica charantia OX=3673 GN=LOC111021867 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.7e-29
Identity = 73/118 (61.86%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 1   MDIVFSLHEAARATILQSFMQSFHPIYISLC-------CLLNLDGLFREVDD----KQPS 60
           +D+VFSL E +RAT L+  M SFH IYI +        CLLNLD L+RE DD    +Q S
Sbjct: 3   LDVVFSLDEGSRATFLRRLMHSFHCIYICVWSHFPLSNCLLNLDRLYREDDDDDDKQQAS 62

Query: 61  SSLVSFERRFFNDYRNLIFNVENGLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQFY 108
           SSL SF+RR FNDY  L+FNV+N LVPGHAF NNISFLE+ ES+LQTH+S +IQRQFY
Sbjct: 63  SSLGSFDRRLFNDYTQLVFNVQNNLVPGHAFNNNISFLELRESLLQTHASYQIQRQFY 120

[Close]

BLAST of Sed0000136 vs. ExPASy TrEMBL
Match: A0A6J1HKA4 (uncharacterized protein LOC111465335 OS=Cucurbita maxima OX=3661 GN=LOC111465335 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.1e-29
Identity = 75/121 (61.98%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 1   MDIVFSLHEAARATILQSFMQSFHPIYISLC--------CLLNLDGLFREVDDKQPSSSL 60
           MD VFSL EA RAT L++ MQSFHP YI L         CLLNLD LFRE D  QPSSSL
Sbjct: 1   MDTVFSLDEAPRATFLRAIMQSFHPTYICLWSYLPHPSHCLLNLDALFREDDANQPSSSL 60

Query: 61  VSFERRFFNDYRNLIFNVE------NGLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQF 108
            SFERR F++Y+ LIF VE      N LVPGHAF NNI FLE+H+S+L  HSSS+IQ  F
Sbjct: 61  GSFERRLFDEYKPLIFKVENNVIIMNSLVPGHAFNNNIFFLELHQSLLHAHSSSQIQSHF 120

[Close]

BLAST of Sed0000136 vs. ExPASy TrEMBL
Match: A0A1S3C9K1 (putative transcription factor bHLH041 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498527 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 77/127 (60.63%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MDIVFSLHEAARATILQSFMQSFHPIYISLC--------CLLNLDGLFREVDD----KQP 60
           M+IVFS ++ ARA+ L S MQS    Y+ L         CL+NL GLFRE +D    KQP
Sbjct: 1   MEIVFSFNQDARAS-LHSIMQSVRSSYVCLWSYLPHPSNCLMNLHGLFREDEDDDQKKQP 60

Query: 61  SSSLVSFERRFFNDYRNLIFNVEN--GLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQF 114
           SSSL S +RR FNDY  LIFN+EN   LVPGHAFKNNISFLEV ES+L THSSS+IQ QF
Sbjct: 61  SSSLGSCQRRLFNDYTQLIFNLENNLSLVPGHAFKNNISFLEVQESVLLTHSSSQIQTQF 120

[Close]

BLAST of Sed0000136 vs. ExPASy TrEMBL
Match: A0A1S3CAK0 (putative transcription factor bHLH041 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498527 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.1e-25
Identity = 74/121 (61.16%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MDIVFSLHEAARATILQSFMQSFHPIYISLC--------CLLNLDGLFREVDD----KQP 60
           M+IVFS ++ ARA+ L S MQS    Y+ L         CL+NL GLFRE +D    KQP
Sbjct: 1   MEIVFSFNQDARAS-LHSIMQSVRSSYVCLWSYLPHPSNCLMNLHGLFREDEDDDQKKQP 60

Query: 61  SSSLVSFERRFFNDYRNLIFNVEN--GLVPGHAFKNNISFLEVHESMLQTHSSSKIQRQF 108
           SSSL S +RR FNDY  LIFN+EN   LVPGHAFKNNISFLEV ES+L THSSS+IQ QF
Sbjct: 61  SSSLGSCQRRLFNDYTQLIFNLENNLSLVPGHAFKNNISFLEVQESVLLTHSSSQIQTQF 120

[Close]

BLAST of Sed0000136 vs. TAIR 10
Match: AT5G56960.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 27/87 (31.03%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 26  IYISLCCLLNLDGLFREV-DDKQPSSSLVSFERRFFNDYRNLIFNVENGLVPGHAFKNNI 85
           + +S   L+++DG + E  ++   SSS  S  R  F++YR  +  ++NG VP  AF NN+
Sbjct: 4   LILSCSYLISMDGYYNEASEEPSSSSSSGSLARSLFHEYRQSVIPLQNGHVPSMAFMNNL 63

Query: 86  SFLEVHESMLQTHSSSKIQRQFYDVSV 112
            ++E+     Q  + +  QR FY + +
Sbjct: 64  PYVEIRPQESQRLAFNDTQRLFYQMKI 90

The following BLAST results are available for this feature:

BLAST of Sed0000136 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890719.1	7.6e-34	69.92	putative transcription factor bHLH041 isoform X2 [Benincasa hispida]	[more]
XP_038890720.1	2.9e-33	70.94	putative transcription factor bHLH041 isoform X3 [Benincasa hispida]	[more]
XP_038890721.1	2.9e-33	70.94	putative transcription factor bHLH041 isoform X4 [Benincasa hispida]	[more]
XP_038890718.1	2.9e-33	70.94	putative transcription factor bHLH041 isoform X1 [Benincasa hispida]	[more]
XP_023537999.1	2.1e-31	65.22	uncharacterized protein LOC111798884 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0000136 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTS4	1.4e-06	31.03	Putative transcription factor bHLH041 OS=Arabidopsis thaliana OX=3702 GN=BHLH41 ...	[more]

BLAST of Sed0000136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCH4	8.5e-31	64.96	uncharacterized protein LOC111444143 OS=Cucurbita moschata OX=3662 GN=LOC1114441...	[more]
A0A6J1DKX4	2.7e-29	61.86	putative transcription factor bHLH041 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1HKA4	6.1e-29	61.98	uncharacterized protein LOC111465335 OS=Cucurbita maxima OX=3661 GN=LOC111465335...	[more]
A0A1S3C9K1	1.1e-25	60.63	putative transcription factor bHLH041 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S3CAK0	3.1e-25	61.16	putative transcription factor bHLH041 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Sed0000136 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56960.1	1.0e-07	31.03	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044658	Transcription factor bHLH92/bHLH041-like	PANTHER	PTHR46665	TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED	coord: 1..113
None	No IPR available	PANTHER	PTHR46665:SF1	TRANSCRIPTION FACTOR BHLH041-RELATED	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000136.1	Sed0000136.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity