Sed0000135 (gene) Chayote v1

Overview
NameSed0000135
Typegene
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
LocationLG09: 29852648 .. 29862908 (+)
RNA-Seq ExpressionSed0000135
SyntenySed0000135
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAACTCGATGATCGATTGTGAAACTGCAAGTCACGTTTGGAAAATTGTGAATGATAGGTTTGCTTCAAGAAATCTGGCACGGGTTCTTGATCTCAAAATGAAACTTCAAACTACAAAGAAGGGTAGTATGAAGCTGGATGAGAATCTTGCGAAGATTAAAAGCCTAGTAGACTCTCTTGCGGCGGCTGGACGAAAGGTAACTCATGATGATCATGTGATGCATATTTTGGCTAGTTTAGGGTCAGAATTTGATTCCACTGTTTCTGTGATTGCTGAGAAAGATGAAACACCATCTTTACATAAGGTGTATTCTCTTCTATTGTCTCAAGAAAATGGTATCTCTCGCAATATGAACATTAATGTGGATGGGTGTGTCCCAACGGTGCATTTAGCCACTCAGTCTAAAGGCAAGAATTCGATTCAAGATTCTGGATATCACGATCAATCCTCTGGAAATATGAATTCAAAATGGAAAGGCAAAGGTAAGAAAAATGGTAAACCACAATGCCAATTGTGTAGCAAGATTGGACACACTGCTCTTCGATGCTACTATCGATTTGAGAGAGGTTTTCAAGGGCCAAATTCTCAATATTCGAACAATACTGGAAGTACTAGCACTCAACATCAGAGTTTTCCTACTCAGAATGCAAATGCGTTTGTTCTACAGAATGATTGTAACCGAGACAATCACTGGTATCCTGATTCGGGGGCATCCAATCATGTCACTCATAATTTTGCAAATATGAGTATTGTTGAGGAATATCAAGGAGAAAACAGAGTTCATATTGGTGATGGATCAGGTTTGAAAGTTATGAATATTGGTTCTTCTGAAATGTGTTCTACTGATTCTAATCATTCTTGTCTGTTTACTCTTAAAAATCTTCTTCATGTTCCTAAAATAACAAAGAATTGAATAAATGTTAGTCAATTTTCTAAAGATAATCAAGTATATCTTGAGTTTCATCCTAATTCTTGTTTTGTGAATGATGCTCGCAATGGTCAAATCCTGCTTCAAGGGAAACTAACTAATGGTCTCTATGCTTTCAACCTGGAAAACGCACATCATCATCCTTCTAAAAACATCTGTGTCATCCCCTTTTCTGCATCCAAAGCAGAAGTCTATCATACTATAGCTGAAAGTTCGAGTCAGAATAGTGGTTCAATTTCTTTGTTTGAAACTCAAATTGTATTGAATATACTGAAATCTTGTAATCTGCCTTACAAATTTTTCAATAAAATGGACTTATTTCATTCTTGTGCTCTTAGTAAATCTCATAAATTTCCATTTTCCAATTCTCTTACTCTTTATAAAGAACTTTTAGAACTTGTTGTAGTTGATATTTGGGGACCTGCTTATCAACTGTCTCGAAACAACTTTAGATATTATCTTAGCTTTGTGGATGCTTATTCTAGGCATACATGGATTTACTTTCTTAACTCTAAAAGTGAGGCTTTTCAATCCTTTGATTCTTTCGAAACCTATATTGAAAAACTCCTAGGAAGACCTATTAAAAGGTTTCAAACTGATAATGGCAGTGAATTTCAACCCTTTATTCCTTTCTTAAAATCACAAGGAATTGAGTATAGGCTTTCATGTCCTTATACCTCTCAACAAAATGGAATTGTTGAGAGGAAACATAGACAAATAGTGGATATGGGTCTCACTCTTCTGTCCAAGGCATCTTTGTCTTTAGAATTTTGGGATGATGCTTTTTCCACGGCTGTGTATCTAATCAACAGACTTCGTACAACTTTTCATCAAATTTCACCTTTAGAAAAGTTGTTTAATCAAAAACCAAATTATTCTGATCTAAAAATGTTTGGTTGTTATTGTTTTCCATGTCTACGTGCGTATAATAATCATAAAATTGATCCTCGTTCTACTCATTGTGTATTTTTGGGATATAGTAGTTTTCAAAAGGGATATAAATGCTTATCAGCTTCAGGGAGATTGTATGTGTCTATAGACATGTTGTGTTTGATGAAAATCGTTTTCCTACTGATTCTTTTTTTTTTATAAAGAACAATTCATGGTTATCTTCTCAAGTTTCCAATCAACTTTATGATATGATCCAGGATCTAGATTATATCAAAAGTAAAAGAATACAAGATAAGCCAAGTTTTGATAGGTCTTGGAACCTCCCCTCTCAAGAGAATCTCTTGAGCCCTACAATAAATCACTCAATAACTCACTAAATAATTGGATGCCTAAACCCTAACCTAACCAACTCTATTTATAACAAAATACTAACTTATTCTCTAAGTAATAGCTAAATAGAGCCCTAGGCCCAACCTTATCAATACCCGCCCCTTTAAAGCACCTTGTCCTCAAGGTGGGCATACACAAAAATAGAAAAATCAAAAATCAAAACTTCTTTTTCTTTTTTCTTTTTTCTTTTTCGGCGGCAACAGCGGCGATTGTGGCAGCGGCGCATCGGTGGTGGCAGAAACGGCGGCGTTGGTGGCGGAGGTGGTGGCGAAGGTGGCAGAGTGGTGGCGACGGAGGTGGTGGCGGCGATGCCAGAGGTGGTGGCGATGGCGGTAGCGGTGGTGGCGGCAGAGGTGGCAGCGGTAATGTCGGAGGTGGTGGCGGCGATGGTGGTGGTGGAGGTGGTGACGGTGGAGGTGGCGGTGTCAAAGCCCTAACCGTCACTGTTTCTTCCACAACCTCCCTTCTTCCTCGAATCCTAGCTTCCATCTCTGAGTACCATTGTTCCCTTGCCTTGGACTGCTCCTCCCTTTCTAATCTTCTTTGTTCCTGCTCCCTTGCACTTTCCTCTCTTATCTCTCTAAAATAACTTTTCATGTCATTGTAAAATTTTTGCCACATCTCTTGAAATAAGCGAACATTTTCTTGATCCATCTCTACAACCAAGAATCGAAACGACTCTGATACCAATTGATATGATCCAGGATCTAGATTATATCAAAAGATAAAAGAATAAAGATAAACCAAGTTTTGATAGGAACTTGGAACCTCCCTTCTCAAGAAAATCTCTTGAGCCCTTACAATAAATCACTCAATAACTCATTTAACAATTGGATGCCTAAACCCTAATCTAACCCACTCTATTTATAACCAAATTCCTAACTTACTCTCCAAGTTATTGCTCAACCAAGGCCTAGGCCCAACCAAACCTTAGGCCCAACCTTATCACTTCATGTCTCCAAAAGTGATCAAACCCATCCTTTAACTATGCATTCTGCACAAAAGGACACAACATTAATTGAATCTCACTCTACTCCTTCTCTGAACCATACAGCTTTACCCTGTTCAGCTGAAAACTCTGAACTTCAACCTAATATGTCAAGTTCTTCTATGGAGTCAAGTCAATCTACATCTAGAGCTGAGGCAGCTAATTTGCCTAACATTGTCAATCAGCATTCAATGACAACCAGAGGAAAGAATGGCATTTCAAAACCTAAGATCTTTGTGACTGAATACATAGAAACTGAACCTCATTCGGTAAAAGAGGTTTTGAAGTGTAAACATTGGGTTGATGCCATGAAAATAGAATATGATGCTCTAATAAAAAAATGAAACATGGTGTTTGGTAGATCCTCCAACTGAGAAGAAAATAATAGGTTGTAAGTGGGTGTACAAGATAAAAAACAATTATGATGGCTAAATTGCGAGATATATAGCCAGATTAGTTGCTCAAGGCTTTCATCAATCAGCTGATCTAGCTTATACAGAGACTTTTAGTCCTGTGGTGAAACCAGTCACTATTAGAGTATTGTTTACCTTAGCCTTGGCACATAATTGGCCACTGAGACAGGTTGATATCAACAACGCCTTTCTTCATGGCTTGTTGAAAGAGGAAGTCTACATGATTCAACCCTCTGGTATGCCATCTATTAACTCTCAACTTGTGTGCAAATTGAAGAAAGCTCTATATGGGTTGAAACAAGCACCCAGAGCATGGTTTGAGAGGTTAAGTTCATTTCTTAATACTCTTGGGTTTGTAGCTCTAAAGTTGATTCTTCCCTCCTTACTTATAATCATAATGGCATTTTGTGCTACATCTTGGTGTATGTTGATGACATGATTTTGACACGGAATTCTAATGAGTTTATAAATGAAGTGGTGAGTTTGTTGCATAAGAAAGTTTCTCTAAAATATTTGGGCCTATTAAGCTATTTTCTTGGAATAGAAGTATCATTTACCAAGGATGGAAAAATTTTCTTGTCTCAAGAAAAGTATATTTCTGATGTTTTGTATAAAGCCAAAATGCATGAAGCAAAGGGCATTGCAACTCCCATGGTGAGTAGTAGTATTCTATTTGGATTTAAAGGAGAAAAATGTACAGACGTTAGACTTTATAGAAGCATGTTGGTTATTTGATGATTATTCTCAAATTATTTGTTTCCATATTTATTGGATTAGTATCTTGTATGTATAATATTATTGATTTGTAGAGGATATTATCCTAATGTATTATTTGTTTCCTTATTTGTAAAGTAAGGGTTTCTCTATTTAAGAAACACCTATTATCAAAGAATAATACAGAAAAATATTCCTCTCATTATATTTTGTACATGGTATCAAAGCCAAACAAAGAAAAAGAGAAATAAAAATATTTTTTCAAAACCCTATAACAGCCTGTTGTCAATTCAGCCGCTACCGCACCTGTCTACCTCTATTGCCGTCGACGAACATCGGTCCGCTCTTATCCGGTGACAGAACTCGCCGGCCGCCAGAACCCAGTTGTTTCCGCTGTTGTCCGTTGAAAAAAAAAACCCATTCCTAAGCGTTTTTTTAACTCGCGCGCCTACTGTCCATCGGTGTCTGATTTCTGTTCATCGGTGACTGTTTTGTTTTTCAGGGGAGAACTCGCACGCCTGCTGTCCATTAAACCTGTCGCAGCTCCAGGAAACCTTGCTGCTGCTTGTTTCTCAAGTTTGGGTTATTTTTTCAAGTTATTTGGCCAACTGATTGGGTTTTTCAACTGCTGTTTTTTTTTCTGCTGCAGTTTACCATATTTAAACTGCTGTTTTTTTAGTTATCTAGCCTTAAAATCTTGTTTTTTGCTGAAGAATAATGTCTGAAGACAAGATATCAGTTGCTAGAATTCCAACCCATAGCCCTACTATCCAAATCACAACCATTCGACTTAATGGTGACAATTTTCTTCGGTGGTCAAAAAGTGTTCGAATGTATATTCGTGGACAAGGAAAGATTGGGTACCTTACTGGAGACAAGGTAGCACCTTCCAAAGATGATTCATCTTTTGCTACATGGGATGCCGAAAACTCCATGGTGATGAGCTGGCTAGTAAATTCCATGGTGGAAGACATTAGTAGCAACTATATGTGTTACTCTACAGCTAAGGAATTATGGGATAGTGTCACAGAGATGTATTGCGACTTAGAAAATCAGTCACAAGTGTTTGAACTAAACCTCAAACTAAGTGACATAAAACAAGGGAGTAATTCTGTTACTCAGTACTTTCACTTACTGAAGCAAATTTGGCAGGACCTTGATTTGTTTGATAAATATGAATTGAAGTCCACTGACGATCAAAAGCACTATAAGAAAATTGTTGAGAATGGTCGAATTTACAAATTCTTGGTTGGACTTAATGTTGAGTTTGATGAAGTTCGAGGCAGAATAATAGGTAAAGCTAACCTTCCTAATATCAACGAAGTGTTTTTCAAATCTACGCAGGGAAGAAAGTCGGCAACATGTGATGATGGGTAAAAACCGGTTGATAGAGAAAAAGCTCTGCGTTAGTTGTTGAAGCCACTGCAAACAAGGCATCTGATCAGACAAATAAGCCTCGTGTGTGGTGTGATCACTGCAACAAACCGAGACATACTCGGGAGACATGTTGGAAGATCCATGGAAAACCTGCCAATCATAAAAGTAATAGACAAGGTGAAAAGAGTATTCGTCCACCGACTTCTAGTGCCAATAGTTTGAATCAACTCCATTCAATAAAGAGCAAATTGATCAAATCCTGAAGCTGCTCAAGACCACTACGACTTATGATAATCCTAGTGTTTCCTTGGCACACACAGGTAATTGTCCTCATGCCTTCTCCTGTCTTACTTCAGCTTCGTGGATTATAGATTCCGGAGCTTCTGACCATATGACTAGTTCCTCAAAACTCTTCGAGTCATACTCTCCATTATATTGTAATGAACAAATTAGAATAGCATATGGTAGTTTCAATTCTATTTCTGGAAAAAGAACTATTAAGTTATTTTCACACCTTACCTTACAATCCGTCATTCATGTTCCCAAATTAGCTTGCAATTTGCTTTCAGTTAGCAAGATTTCTAGAGATTCTAACTGTCGTGTTATTTTCTATGACTCACGTTGTGTCTTCCGAATGTGAGTCGGGAAGACGATTGGACGTGCTAGGATGCTTGATGGCCTTTACTATTTTGAGGAAGCTTCAACTAGTCATAAAAAGGTTCAGGGTTTAAGTAGTGTTAGTTCTCCATCTGTTAGGGAAACTTTGATGCTTTGACATTATAGATTAGGACATCCCAGTTTTTTCTATTTAAAGTATTTGTTTCCAGAACTCTTTAAAGGAATTGATTGTTCTACCTTTCATTGCGAACATTGTGCCTTTGCAAAAACTCATCGCACTTCTTATTTACCTCAAAGTTATAAGGCTTCTGCACCTTTTTATTTAATTCATAGCGATGTCTGGGGTCCATCTAAGGTAGTAACTCAAAGTGGGAAACGGTGGTTCGTTACCTTTATCGATGATCTCACCCGTGTAACTTGGGTGTATCTTTTAACTCACAAGTCTGATGTTAAGGAGGTATTTATCCGTTTCTATAACATGATTGAAACCCAATTTAAAACCAAAATCAGTATCTTACATTCGACAATGGCCTTTGAATATTTCAATACCTATCTAACTGAGTTCTTACACACCAAATGAGTCTATCACCAATCAACCTGTAGAAATACTCCTCAACAAAATGGCATTGCAGAACGAAAGAATAGACATTTATTGGAGGTTTCTAGGGTCATCATGTTCTCTATGAATGTCCCTCAGTATTTATGGGGTGACGCAATTCTTACCGCTACTTACCTCATAAATCGAATGCCTACTAAGGTTTTAGGTTTTCAAACTCCTCTAGAATACCTAAGAACCACCTTTCCTACAATTCGAATTTTCTCAGATCTACCAATCAAGGTTTTTGGATGCATTGCCTTTGTTTATGTGTCCAACCCTTCACTATCCAAACTAGATCCTCGGGCTACCAAATGCATATTCTTAGGCTATACCTCCCATAAAAAGGCCTATAGATGTTATGATCCTGTAACAAAGAGATTTTTTGAAAGTATGGATGTGTCATTTGTAGAACACCAATCCTTTTTTAAACCTCATTCCCTTCAGGGGGAGACATCTACATTTGAAGGAAATTTTTGGGATACCTCACCTCTTCCAAATATCATACACTCTGAGGTTGTTACAATGCCCAATATGGAAGGTTCCTCCTCAGGGGGAGAAACACTACAGAATAATCAACCTGAACTTCAAGTTTATACTAGGAGAAAGCTAAGTCAAAAGAACATAGGCAAGATGGCTAATCCGACGCATAATCAATCTAATACTCCGACAATTGATCCTGATAATCTAGGTACTTTATCTGTAACTCTTCCTTCCACTTCTTCTCCTCCTGAAAATAATATAACCAATGGCTCTGACCTTGATGTTCCCATAGCTTATAGGAAAAGAACCCAAAATTGTACCAAATATCCCATTGAGAATTACTTATCCTACAAAAATCTGTCTGACACTCATAGGGCTTTTACCTCTAGGATAACTAACCTGTTTGTCCCAAGGAATATACAAGAGGCCCTAGATGATCCGAATTGGAATTTAGCAGTCATGGAGGAAATGAATGCTCTCAAACAGAATCACACGTGGGACATAGTTGAGCTGCCAAAAGACAAGAAGACAGTAGGGTGCAAATGGGTGTTCACTATAAAATGTCATGCAGATGGGAGTGTTGAAAGGTACAAAGCAAGATTGGTTGCTAAGGGATTCACCCAAACCTATGGAATCGATTATCAAGAGACATTTGCCCGATTGCCAAAATTAACTCTATTAGGGTATTGCTAGCTATTCTTTGTCAATGAAGAATGACCTTTGTATCAACTTGATGTAAAAAATGCATTCCTTAACGGTGATCTCGAAGAAGAGGTATTTATGGACTTACCACCTGGCTTTGAAATAAATTATGGAAGTAAAAACGTATGCAGGTTACATAAGTCATTATATGGCCTCAAGCAGTCACCCAGAGCATGGTTTGAACGGTTTGAGAAGGCAGTTACAAGCTATGGATTTCTTCAAAGTTAAGCGAGATCACACTATATTTTATAGACATACTAGAAAGCGGCAAGATGGTCATTTTGATAGTGTATGTTGATGACATAATAATAAGCGGCAATGATGATCTGGAAATAACCATTTTGAAGAAAAATTTAGCTAATGAGTTTCAAATCAAAGATCTGGGAGTCCTAAAATATTTTTTAGGAATGGAGTTTGCAAGATCGAAAAGTGGAATTCTAGTAAATCAAAGGAAATATGTAATAGATCTACTAGAAGAAACTGGATTACTCGGTTGTAGACCAACAGAAACTCCTATTGAACAAAATGTGAAATTGCAAACATCAACATGTGAAGAAGTAAAGGATAAAGAAAAATATCAGAGACTTGTTGGGAGACTTATTTACCTATCTCACACACGTCCTGACATAGCCTTTGCCGTTAGTATGGTTAGTCAATTTATGCATGCTCCTGGTCCTGCTCACTTTGAAGCAGTAAATAGAATTTTAAGATACTTGAAAGGCACTCCAGGAAAATGTATACTATTTAAAAAACAAGGTCATCTTCATGTTGAAATCTACACAGATGCTGACTGGGCAGGTAGTACCACAGATAGAAGGTCAACTTCAGGTTATTGCTCCTTTGTTGGAGGAAACTTAGTCACTTGGCGTAGTAAAAAACAAAATGTGGTGGCAAGAAGTAGTGCTGAAGCCGAATTTAGGGCACTAGCTCATGGTATTTGTGAGGGTATATGGATTAAGAGACTATTGGAGGAGCTAAAGTTCACTCAATCAACACCAATACGTGTGTATTGTGATAACAAGGCAGCCATTTCCATTGCCCACAATCCAGTCCTTCACGATAGGACCAAACATATTGAAGTTGACAAACATTTTATAAAGAAGAAGATTGAAGTTGGAACCATATGTATCCCCTATATGCCTACTTCAGAACAAGTGGCTGACGTCTTTACGAAAGGTCTTCCTAAGCGACATTTCAATAAGATGATTGGCAAGCTGGCAATGGAAGACATTTTTAGTCCAGCTTGAGGGGGAGTGTTGGTTATTTGATGATTATTCTCAAATTATTTGTTTCCATATTTATTGGATTAGTATCTTGTATGTATAATATTATTGATTTGTAGAGGATATTATCCTAATGTATTATTTGTTTCCTTATTTGTAAAGTAAGGGTTTCTCTATTTAAGAAACACCTATTATCAAAGAATAATACAGAAAAATATTCCTCTCATTATATTTTGTACAAAGCATTGTTGGGGCCTTGCAGTATGCAACTTTAACTCAACCAGAAATCTCCTATAGTGTGAACAAGGTTTTCTAGTTTATGCATACTCCTACAAATGATCATTGGTTAGCTGTAAAGAGGATTATGAGATACTTGGCAGGCACTATTACTCATGGGCTTGTTTTCCATAAACCGCAAAACCTTGTGATTGAAGGGTACACTGATGCAGACTGGGGATCTGATCCTGATGACAGAAAGTCAACTTTGGGTTATTGTGTTTATTTTGGAGGAAATTTAATACAATGGGAGGCAAAGAAGCAAGCAATCAAATCCCGATCGAGTACTGAGGCAGAATATAGAAGCTTAGCTCATGTAGCTGCTGAATTAGTATGGCTGAAAGCTTTGTTTAAAGACTTAAACATACTAGTTCTGACAAAACCAGTTGTATGGTGTGATAATCTGAGTGCAGTGCACCTTAGTGCCAATCCGGTGCTTCATTCTCGTACTAAACATGTAGAAATCGATATTTACTTTGTCAGAGATCTAATGTTACAACAACAGGTCTACATAAGACATCTCCCAGCTGCAGCTCAGGTAGCAGATATTTTTACCAAACCATTATCAGCAGCTCAGTTTCTTCCTTTAGCATCCAAGCTCAATGTCACTTCTCCGGTGTCTATTGGCTTGCGGGGGATTATCAAGAGAGCACATTAA

mRNA sequence

ATGTCGAACTCGATGATCGATTGTGAAACTGCAAGTCACGTTTGGAAAATTGTGAATGATAGGTTTGCTTCAAGAAATCTGGCACGGGTTCTTGATCTCAAAATGAAACTTCAAACTACAAAGAAGGGTAGTATGAAGCTGGATGAGAATCTTGCGAAGATTAAAAGCCTAGTAGACTCTCTTGCGGCGGCTGGACGAAAGGTAACTCATGATGATCATGTGATGCATATTTTGGCTAGTTTAGGGTCAGAATTTGATTCCACTGTTTCTGTGATTGCTGAGAAAGATGAAACACCATCTTTACATAAGGTGTATTCTCTTCTATTGTCTCAAGAAAATGGTATCTCTCGCAATATGAACATTAATGTGGATGGGTGTGTCCCAACGGTGCATTTAGCCACTCAGTCTAAAGGCAAGAATTCGATTCAAGATTCTGGATATCACGATCAATCCTCTGGAAATATGAATTCAAAATGGAAAGGCAAAGGTAAGAAAAATGGTAAACCACAATGCCAATTGTGTAGCAAGATTGGACACACTGCTCTTCGATGCTACTATCGATTTGAGAGAGGTTTTCAAGGGCCAAATTCTCAATATTCGAACAATACTGGAAGTACTAGCACTCAACATCAGAGTTTTCCTACTCAGAATGCAAATGCGTTTGTTCTACAGAATGATTGTAACCGAGACAATCACTGGTATCCTGATTCGGGGGCATCCAATCATGTCACTCATAATTTTGCAAATATGAGTATTGTTGAGGAATATCAAGGAGAAAACAGAGTTCATATTGGTGATGGATCAGGCACTATTACTCATGGGCTTGTTTTCCATAAACCGCAAAACCTTGTGATTGAAGGGTACACTGATGCAGACTGGGGATCTGATCCTGATGACAGAAAGTCAACTTTGGGTTATTGTGTTTATTTTGGAGGAAATTTAATACAATGGGAGGCAAAGAAGCAAGCAATCAAATCCCGATCGAGTACTGAGGCAGAATATAGAAGCTTAGCTCATGTAGCTGCTGAATTAGTATGGCTGAAAGCTTTGTTTAAAGACTTAAACATACTAGTTCTGACAAAACCAGTTGTATGGTGTGATAATCTGAGTGCAGTGCACCTTAGTGCCAATCCGGTGCTTCATTCTCGTACTAAACATGTAGAAATCGATATTTACTTTGTCAGAGATCTAATGTTACAACAACAGGTCTACATAAGACATCTCCCAGCTGCAGCTCAGGTAGCAGATATTTTTACCAAACCATTATCAGCAGCTCAGTTTCTTCCTTTAGCATCCAAGCTCAATGTCACTTCTCCGGTGTCTATTGGCTTGCGGGGGATTATCAAGAGAGCACATTAA

Coding sequence (CDS)

ATGTCGAACTCGATGATCGATTGTGAAACTGCAAGTCACGTTTGGAAAATTGTGAATGATAGGTTTGCTTCAAGAAATCTGGCACGGGTTCTTGATCTCAAAATGAAACTTCAAACTACAAAGAAGGGTAGTATGAAGCTGGATGAGAATCTTGCGAAGATTAAAAGCCTAGTAGACTCTCTTGCGGCGGCTGGACGAAAGGTAACTCATGATGATCATGTGATGCATATTTTGGCTAGTTTAGGGTCAGAATTTGATTCCACTGTTTCTGTGATTGCTGAGAAAGATGAAACACCATCTTTACATAAGGTGTATTCTCTTCTATTGTCTCAAGAAAATGGTATCTCTCGCAATATGAACATTAATGTGGATGGGTGTGTCCCAACGGTGCATTTAGCCACTCAGTCTAAAGGCAAGAATTCGATTCAAGATTCTGGATATCACGATCAATCCTCTGGAAATATGAATTCAAAATGGAAAGGCAAAGGTAAGAAAAATGGTAAACCACAATGCCAATTGTGTAGCAAGATTGGACACACTGCTCTTCGATGCTACTATCGATTTGAGAGAGGTTTTCAAGGGCCAAATTCTCAATATTCGAACAATACTGGAAGTACTAGCACTCAACATCAGAGTTTTCCTACTCAGAATGCAAATGCGTTTGTTCTACAGAATGATTGTAACCGAGACAATCACTGGTATCCTGATTCGGGGGCATCCAATCATGTCACTCATAATTTTGCAAATATGAGTATTGTTGAGGAATATCAAGGAGAAAACAGAGTTCATATTGGTGATGGATCAGGCACTATTACTCATGGGCTTGTTTTCCATAAACCGCAAAACCTTGTGATTGAAGGGTACACTGATGCAGACTGGGGATCTGATCCTGATGACAGAAAGTCAACTTTGGGTTATTGTGTTTATTTTGGAGGAAATTTAATACAATGGGAGGCAAAGAAGCAAGCAATCAAATCCCGATCGAGTACTGAGGCAGAATATAGAAGCTTAGCTCATGTAGCTGCTGAATTAGTATGGCTGAAAGCTTTGTTTAAAGACTTAAACATACTAGTTCTGACAAAACCAGTTGTATGGTGTGATAATCTGAGTGCAGTGCACCTTAGTGCCAATCCGGTGCTTCATTCTCGTACTAAACATGTAGAAATCGATATTTACTTTGTCAGAGATCTAATGTTACAACAACAGGTCTACATAAGACATCTCCCAGCTGCAGCTCAGGTAGCAGATATTTTTACCAAACCATTATCAGCAGCTCAGTTTCTTCCTTTAGCATCCAAGCTCAATGTCACTTCTCCGGTGTCTATTGGCTTGCGGGGGATTATCAAGAGAGCACATTAA

Protein sequence

MSNSMIDCETASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDSLAAAGRKVTHDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNMNINVDGCVPTVHLATQSKGKNSIQDSGYHDQSSGNMNSKWKGKGKKNGKPQCQLCSKIGHTALRCYYRFERGFQGPNSQYSNNTGSTSTQHQSFPTQNANAFVLQNDCNRDNHWYPDSGASNHVTHNFANMSIVEEYQGENRVHIGDGSGTITHGLVFHKPQNLVIEGYTDADWGSDPDDRKSTLGYCVYFGGNLIQWEAKKQAIKSRSSTEAEYRSLAHVAAELVWLKALFKDLNILVLTKPVVWCDNLSAVHLSANPVLHSRTKHVEIDIYFVRDLMLQQQVYIRHLPAAAQVADIFTKPLSAAQFLPLASKLNVTSPVSIGLRGIIKRAH
Homology
BLAST of Sed0000135 vs. NCBI nr
Match: CAN61537.1 (hypothetical protein VITISV_012372 [Vitis vinifera])

HSP 1 Score: 259.6 bits (662), Expect = 5.0e-65
Identity = 172/614 (28.01%), Postives = 281/614 (45.77%), Query Frame = 0

Query: 5   MIDCETASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDSLAAA 64
           +I  +T++  W  +   F++ + AR++ L++  QTT+KGS+ + E + K+K++ DSLAA 
Sbjct: 37  IIGYQTSNTAWVALEKIFSASSKARIMQLRLAFQTTRKGSLPIMEYILKMKTITDSLAAI 96

Query: 65  GRKVTHDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNMNINVD 124
           G  V   D ++ +LA LG +++S V+ +   ++  +LH V+S+ LS E  +    N   +
Sbjct: 97  GELVVERDQILQLLAGLGLDYNSIVASLTACEDDLTLHSVHSIPLSHEQRL-HFQNSTAE 156

Query: 125 GCVPTVHLATQ------------SKGKNSIQDSGYHDQSSG---NMNSKWKGKGKKNGKP 184
             V + H+ TQ              G +    + +H Q +G   N + + +   +  G+P
Sbjct: 157 DEVISAHITTQDHPQPSRIYHTGKPGSSFNSQNSFHHQQNGRHPNAHGQNQHTHQSGGRP 216

Query: 185 QCQLCSKIGHTALRCYYRFERGFQGPNSQYSNNTGSTSTQHQSFPTQNANAFVLQNDCNR 244
           QCQLC K GHT + CY+RF+  FQGP+    N T ++S  +    T    A V       
Sbjct: 217 QCQLCGKYGHTVISCYHRFDINFQGPDILPINPTKASS--NVPVNTNKMQAMVASPSSAF 276

Query: 245 DNHWYPDSGASNHVTHNFANMSIVEEYQGENRVHIG------------------------ 304
           ++ W+ D+GA++H++HN   +S ++ YQG+++V +G                        
Sbjct: 277 NDSWFLDTGATHHLSHNEGQLSNIQPYQGKDQVTVGNAKPRTVKQALQDPHWCQAMEVEY 336

Query: 305 ---------------------------------DGS------------------------ 364
                                            DGS                        
Sbjct: 337 TTLLKTNTWTLVPPHPYGNVIACKWVFKLKYKLDGSTDRYKARLVAKGFNQTPGVDYFET 396

Query: 365 ------------------------------------------------------------ 424
                                                                       
Sbjct: 397 FSPVLQIYSLYSFMLMTFSSPGAAQLRSTVGALQYVTIXRPDLAFVVNKACQFMAHPTTT 456

Query: 425 -------------GTITHGLVFHKPQNLVIEGYTDADWGSDPDDRKSTLGYCVYFGGNLI 450
                         T +HG+  H   +  ++GYT+ADW S PDDR ST GY ++ G NLI
Sbjct: 457 HWNAIKRILRYLKSTSSHGISLHASLSFELQGYTNADWASSPDDRHSTGGYYIFLGPNLI 516

BLAST of Sed0000135 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia])

HSP 1 Score: 245.0 bits (624), Expect = 1.3e-60
Identity = 137/292 (46.92%), Postives = 186/292 (63.70%), Query Frame = 0

Query: 5   MIDCETASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDSLAAA 64
           MI C TA  VW+I+ + + SRNLARV+ LK KL+  KKG++ L +   K+K+LVDSLAAA
Sbjct: 23  MIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAA 82

Query: 65  GRKVTHDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNMNINVD 124
           G+KVT +DH+MHIL  L SEF+STVSVI+ + +T +L +VYSLLLS E    RN +IN D
Sbjct: 83  GKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNERN-SINTD 142

Query: 125 GCVPTVHLATQSKGKNSIQDSG------YHDQSSGNMNSKWKGKGKKNGKPQCQLCSKIG 184
           G +P+V+L  Q+K  NS Q          +++S  + N  ++     N +PQCQ+  K G
Sbjct: 143 GTLPSVNLTQQTKNSNSAQSIDGQRPYMQNNRSKNSGNPNFRRNWNSNNRPQCQIYGKFG 202

Query: 185 HTALRCYYRFERGFQGPNSQ--------------YSNNTGSTSTQHQSF-----PTQNAN 244
           HTALRCY RFE+ F GPN Q               ++N  +   Q Q+F     P  N++
Sbjct: 203 HTALRCYLRFEKTFLGPNGQSHMQHKFSGGSNSSINSNMTAFGNQQQAFTNGFQPNSNSH 262

Query: 245 --AFVLQNDCNRDNHWYPDSGASNHVTHNFANMSIVEEYQGENRVHIGDGSG 270
             AF+ Q D NRD +WYPDSGA+NHVT NF N++   EY G+N+V IG+G+G
Sbjct: 263 MAAFLAQQDFNRDTNWYPDSGATNHVTSNFNNLATSTEYTGDNQVRIGNGTG 313

BLAST of Sed0000135 vs. NCBI nr
Match: XP_022136883.1 (dr1-associated corepressor homolog isoform X2 [Momordica charantia])

HSP 1 Score: 243.4 bits (620), Expect = 3.7e-60
Identity = 137/296 (46.28%), Postives = 185/296 (62.50%), Query Frame = 0

Query: 5   MIDCETASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDSLAAA 64
           MI C TA  VW+I+ + + SRNLARV+ LK KL+  KKG++ L +   K+K+LVDSLAAA
Sbjct: 23  MIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAA 82

Query: 65  GRKVTHDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNMNINVD 124
           G+KVT +DH+MHIL  L SEF+STVSVI+ + +T +L +VYSLLLS E    RN +IN D
Sbjct: 83  GKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNERN-SINTD 142

Query: 125 GCVPTVHLATQSKGKNSIQDSG------YHDQSSGNMNSKWKGKGKKNGKPQCQLCSKIG 184
           G +P+V+L  Q+K  NS Q          +++S  + N  ++     N +PQCQ+  K G
Sbjct: 143 GTLPSVNLTQQTKNSNSAQSIDGQRPYMQNNRSKNSGNPNFRRNWNSNNRPQCQIYGKFG 202

Query: 185 HTALRCYYRFERGFQGPNSQ--------------YSNNTGSTSTQHQSF-----PTQNAN 244
           HTALRCY RFE+ F GPN Q               ++N  +   Q Q+F     P  N++
Sbjct: 203 HTALRCYLRFEKTFLGPNGQSHMQHKFSGGSNSSINSNMTAFGNQQQAFTNGFQPNSNSH 262

Query: 245 --AFVLQNDCNRDNHWYPDSGASNHVTHNFANMSIVEEYQGENRVHIGDGSGTITH 274
             AF+ Q D NRD +WYPDSGA+NHVT NF N++   EY G+N+V IG+G     H
Sbjct: 263 MAAFLAQQDFNRDTNWYPDSGATNHVTSNFNNLATSTEYTGDNQVRIGNGPSNWPH 317

BLAST of Sed0000135 vs. NCBI nr
Match: CAN77775.1 (hypothetical protein VITISV_021887 [Vitis vinifera])

HSP 1 Score: 237.7 bits (605), Expect = 2.0e-58
Identity = 171/641 (26.68%), Postives = 283/641 (44.15%), Query Frame = 0

Query: 1   MSNSMIDCETASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDS 60
           M   +++C+T++ VW ++   F S + AR L L+  LQ+ KKG++ +++ + K++++ D 
Sbjct: 100 MYGHVVNCQTSTEVWSVLEKLFVSDSKARTLQLRFMLQSLKKGALSINDYVLKMRNIADM 159

Query: 61  LAAAGRKVTHDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNMN 120
           L+ +G+ V ++D +++IL  LG EF++ V  I  + E  SL +V+ LL S E  + +   
Sbjct: 160 LSTSGKPVPYEDLILYILGGLGPEFETIVVNITSRSEAISLQEVHYLLQSHEIRLEQLSV 219

Query: 121 INVDGCVPTVHLATQSKGKNSIQDSGYHD-QSSGNMNSKWKGKGKKNGKPQ---CQLCSK 180
            +V    P  H  T       +Q+S  +D Q  G+ N  ++ +  +N +      QLC K
Sbjct: 220 ASVIDVPPAAHTIT-----GGVQNSNTNDGQFRGSSNRNFRPRNVRNPQTSRIVYQLCGK 279

Query: 181 IGHTALRCYYRFERGFQGP----NSQYSNNTGSTSTQHQ--------------------S 240
           +GHTA++C++ F+  FQ P    N Q+S+   S   Q Q                    S
Sbjct: 280 MGHTAMKCFHHFDVYFQSPPRAQNQQFSSLHQSQQPQLQPPPLQPQMQPQYYSTGPLVPS 339

Query: 241 FPTQNA-----------NAFVLQNDCNRDNHWYPDSGASNHVT----------------- 300
            P QN+           +A+++  D + +  W+  SGA++H+T                 
Sbjct: 340 RPIQNSHQQHDSTNTSHHAYIVTPDLDSNTSWFFVSGATHHMTTDSNTLDVSDHYFGTDF 399

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 400 SEDTNVFLPHLATTPSTINKQPATPSIGYSLQAPRAWFHKLREALHTWGFISSTLDTSLF 459

Query: 361 -----------------------------------HN---FANMSIVEEYQGENRVHIGD 420
                                              HN     ++ +V+++ G   + I  
Sbjct: 460 IYKHNDNFLLLLVYVDDLLITGNNAPLIQTLIQDLHNRFALKDLGLVKDFLGFEALRITT 519

Query: 421 G--------------------------------------------SGTITHGLVFHKPQN 444
           G                                             GT+ HGL F    +
Sbjct: 520 GLHLTQSKYMIDLLTRTKMHSSKPVPTPMKCSPQTSCSLRVLRYLKGTVHHGLHFTPASS 579

BLAST of Sed0000135 vs. NCBI nr
Match: XP_022157847.1 (uncharacterized protein LOC111024461 [Momordica charantia])

HSP 1 Score: 231.5 bits (589), Expect = 1.4e-56
Identity = 108/181 (59.67%), Postives = 142/181 (78.45%), Query Frame = 0

Query: 269 GTITHGLVFHKPQNLVIEGYTDADWGSDPDDRKSTLGYCVYFGGNLIQWEAKKQAIKSRS 328
           GT  HGL+  KP  + ++GY +ADW SDPDDRKST G+C+Y GGN I W +KKQ+I SRS
Sbjct: 79  GTYDHGLLLTKPTLMQLQGYXNADWASDPDDRKSTXGFCIYLGGNPISWGSKKQSIISRS 138

Query: 329 STEAEYRSLAHVAAELVWLKALFKDLNILVLTKPVVWCDNLSAVHLSANPVLHSRTKHVE 388
           STEAEYR+LA  A+ELVWLK LF++L+I VL+ P++WCDNLS+VHLS+NP+   +TKHVE
Sbjct: 139 STEAEYRALALAASELVWLKTLFRELHIPVLSNPILWCDNLSSVHLSSNPI--QKTKHVE 198

Query: 389 IDIYFVRDLMLQQQVYIRHLPAAAQVADIFTKPLSAAQFLPLASKLNVTSPVSIGLRGII 448
           IDIYFVRD ++  Q+ ++HLP+ AQ+AD  TKPLS  +F  L +KLNV +   IGLRG++
Sbjct: 199 IDIYFVRDXVISGQLRVQHLPSTAQIADFLTKPLSPTRFHALKTKLNVRASXXIGLRGVL 257

Query: 449 K 450
           +
Sbjct: 259 R 257

BLAST of Sed0000135 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 9.2e-38
Identity = 84/203 (41.38%), Postives = 118/203 (58.13%), Query Frame = 0

Query: 235  PDSGASNHVTHNFANMSIVEEYQGENRVHIGDGSGTITHGLVFHKPQNLVIEGYTDADWG 294
            PD   + +    F +M   E  Q   R+ +   +GT  HG+   K   L +  Y+DADW 
Sbjct: 1260 PDISYAVNRLSQFMHMPTEEHLQALKRI-LRYLAGTPNHGIFLKKGNTLSLHAYSDADWA 1319

Query: 295  SDPDDRKSTLGYCVYFGGNLIQWEAKKQAIKSRSSTEAEYRSLAHVAAELVWLKALFKDL 354
             D DD  ST GY VY G + I W +KKQ    RSSTEAEYRS+A+ ++E+ W+ +L  +L
Sbjct: 1320 GDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTEL 1379

Query: 355  NILVLTKPVVWCDNLSAVHLSANPVLHSRTKHVEIDIYFVRDLMLQQQVYIRHLPAAAQV 414
             I +   PV++CDN+ A +L ANPV HSR KH+ ID +F+R+ +    + + H+    Q+
Sbjct: 1380 GIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQL 1439

Query: 415  ADIFTKPLSAAQFLPLASKLNVT 438
            AD  TKPLS   F   ASK+ VT
Sbjct: 1440 ADTLTKPLSRTAFQNFASKIGVT 1461


HSP 2 Score: 97.1 bits (240), Expect = 5.6e-19
Identity = 70/274 (25.55%), Postives = 128/274 (46.72%), Query Frame = 0

Query: 10  TASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDSLAAAGRKVT 69
           TA+ +W+ +   +A+ +   V  L+ +L+   KG+  +D+ +  + +  D LA  G+ + 
Sbjct: 105 TAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMD 164

Query: 70  HDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNMNINV----DG 129
           HD+ V  +L +L  E+   +  IA KD  P+L +++  LL+ E+ I    +  V      
Sbjct: 165 HDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSATVIPITAN 224

Query: 130 CVPTVHLATQSKGKNSIQDSGYHDQSSGNMNSKWKGK------GKKNGKP---QCQLCSK 189
            V   +  T +   N  +++ Y ++++ N +  W+             KP   +CQ+C  
Sbjct: 225 AVSHRNTTTTNNNNNGNRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGV 284

Query: 190 IGHTALRCYYRFERGFQGPNSQYSNNTGSTSTQH--QSFPTQNANAFVLQNDCNRDNHWY 249
            GH+A RC            SQ  +   S ++Q     F      A +        N+W 
Sbjct: 285 QGHSAKRC------------SQLQHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWL 344

Query: 250 PDSGASNHVTHNFANMSIVEEYQGENRVHIGDGS 269
            DSGA++H+T +F N+S+ + Y G + V + DGS
Sbjct: 345 LDSGATHHITSDFNNLSLHQPYTGGDDVMVADGS 366

BLAST of Sed0000135 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-35
Identity = 77/177 (43.50%), Postives = 107/177 (60.45%), Query Frame = 0

Query: 268  SGTITHGLVFHKPQNLVIEGYTDADWGSDPDDRKSTLGYCVYFGGNLIQWEAKKQAIKSR 327
            +GT  HG+   K   L +  Y+DADW  D DD  ST GY VY G + I W +KKQ    R
Sbjct: 1275 AGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVR 1334

Query: 328  SSTEAEYRSLAHVAAELVWLKALFKDLNILVLTKPVVWCDNLSAVHLSANPVLHSRTKHV 387
            SSTEAEYRS+A+ ++EL W+ +L  +L I +   PV++CDN+ A +L ANPV HSR KH+
Sbjct: 1335 SSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHI 1394

Query: 388  EIDIYFVRDLMLQQQVYIRHLPAAAQVADIFTKPLSAAQFLPLASKLNVTS-PVSIG 444
             +D +F+R+ +    + + H+    Q+AD  TKPLS   F   + K+ V   P S G
Sbjct: 1395 ALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVPPSCG 1451

BLAST of Sed0000135 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 126.7 bits (317), Expect = 6.6e-28
Identity = 76/207 (36.71%), Postives = 111/207 (53.62%), Query Frame = 0

Query: 235  PDSGASNHVTHNFANMSIVEEYQGENRVHIGDGSGTITHGLVFHKPQNLVIE----GYTD 294
            PD   + ++   +++ +  E +Q   RV +    GTI   L+F K  NL  E    GY D
Sbjct: 1197 PDLTTAVNILSRYSSKNNSELWQNLKRV-LRYLKGTIDMKLIFKK--NLAFENKIIGYVD 1256

Query: 295  ADWGSDPDDRKSTLGYCV-YFGGNLIQWEAKKQAIKSRSSTEAEYRSLAHVAAELVWLKA 354
            +DW     DRKST GY    F  NLI W  K+Q   + SSTEAEY +L     E +WLK 
Sbjct: 1257 SDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKF 1316

Query: 355  LFKDLNILVLTKPVVWCDNLSAVHLSANPVLHSRTKHVEIDIYFVRDLMLQQQVYIRHLP 414
            L   +NI +     ++ DN   + ++ NP  H R KH++I  +F R+ +    + + ++P
Sbjct: 1317 LLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIP 1376

Query: 415  AAAQVADIFTKPLSAAQFLPLASKLNV 437
               Q+ADIFTKPL AA+F+ L  KL +
Sbjct: 1377 TENQLADIFTKPLPAARFVELRDKLGL 1400

BLAST of Sed0000135 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.1e-22
Identity = 51/144 (35.42%), Postives = 87/144 (60.42%), Query Frame = 0

Query: 284  VIEGYTDADWGSDPDDRKSTLGYCVYFGGNLIQWEAKKQAIKSRSSTEAEYRSLAHVAAE 343
            +++GYTDAD   D D+RKS+ GY   F G  I W++K Q   + S+TEAEY +      E
Sbjct: 1174 ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1233

Query: 344  LVWLKALFKDLNILVLTKPVVWCDNLSAVHLSANPVLHSRTKHVEIDIYFVRDLMLQQQV 403
            ++WLK   ++L  L   + VV+CD+ SA+ LS N + H+RTKH+++  +++R+++  + +
Sbjct: 1234 MIWLKRFLQELG-LHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESL 1293

Query: 404  YIRHLPAAAQVADIFTKPLSAAQF 428
             +  +      AD+ TK +   +F
Sbjct: 1294 KVLKISTNENPADMLTKVVPRNKF 1316

BLAST of Sed0000135 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-17
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 269 GTITHGLVFHKPQNLVIEGYTDADWGSDPDDRKSTLGYCVYFGGNLIQWEAKKQAIKSRS 328
           GTI HGL  HK   L ++ + D+DW      R+ST G+C + G N+I W AK+Q   SRS
Sbjct: 148 GTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRS 207

Query: 329 STEAEYRSLAHVAAELVWLKA 350
           STE EYR+LA  AAEL W  A
Sbjct: 208 STETEYRALALTAAELTWSSA 228

BLAST of Sed0000135 vs. ExPASy TrEMBL
Match: A5BLT7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_012372 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.4e-65
Identity = 172/614 (28.01%), Postives = 281/614 (45.77%), Query Frame = 0

Query: 5   MIDCETASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDSLAAA 64
           +I  +T++  W  +   F++ + AR++ L++  QTT+KGS+ + E + K+K++ DSLAA 
Sbjct: 37  IIGYQTSNTAWVALEKIFSASSKARIMQLRLAFQTTRKGSLPIMEYILKMKTITDSLAAI 96

Query: 65  GRKVTHDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNMNINVD 124
           G  V   D ++ +LA LG +++S V+ +   ++  +LH V+S+ LS E  +    N   +
Sbjct: 97  GELVVERDQILQLLAGLGLDYNSIVASLTACEDDLTLHSVHSIPLSHEQRL-HFQNSTAE 156

Query: 125 GCVPTVHLATQ------------SKGKNSIQDSGYHDQSSG---NMNSKWKGKGKKNGKP 184
             V + H+ TQ              G +    + +H Q +G   N + + +   +  G+P
Sbjct: 157 DEVISAHITTQDHPQPSRIYHTGKPGSSFNSQNSFHHQQNGRHPNAHGQNQHTHQSGGRP 216

Query: 185 QCQLCSKIGHTALRCYYRFERGFQGPNSQYSNNTGSTSTQHQSFPTQNANAFVLQNDCNR 244
           QCQLC K GHT + CY+RF+  FQGP+    N T ++S  +    T    A V       
Sbjct: 217 QCQLCGKYGHTVISCYHRFDINFQGPDILPINPTKASS--NVPVNTNKMQAMVASPSSAF 276

Query: 245 DNHWYPDSGASNHVTHNFANMSIVEEYQGENRVHIG------------------------ 304
           ++ W+ D+GA++H++HN   +S ++ YQG+++V +G                        
Sbjct: 277 NDSWFLDTGATHHLSHNEGQLSNIQPYQGKDQVTVGNAKPRTVKQALQDPHWCQAMEVEY 336

Query: 305 ---------------------------------DGS------------------------ 364
                                            DGS                        
Sbjct: 337 TTLLKTNTWTLVPPHPYGNVIACKWVFKLKYKLDGSTDRYKARLVAKGFNQTPGVDYFET 396

Query: 365 ------------------------------------------------------------ 424
                                                                       
Sbjct: 397 FSPVLQIYSLYSFMLMTFSSPGAAQLRSTVGALQYVTIXRPDLAFVVNKACQFMAHPTTT 456

Query: 425 -------------GTITHGLVFHKPQNLVIEGYTDADWGSDPDDRKSTLGYCVYFGGNLI 450
                         T +HG+  H   +  ++GYT+ADW S PDDR ST GY ++ G NLI
Sbjct: 457 HWNAIKRILRYLKSTSSHGISLHASLSFELQGYTNADWASSPDDRHSTGGYYIFLGPNLI 516

BLAST of Sed0000135 vs. ExPASy TrEMBL
Match: A0A2N9F6Q3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10725 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.7e-63
Identity = 171/604 (28.31%), Postives = 278/604 (46.03%), Query Frame = 0

Query: 5   MIDCETASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDSLAAA 64
           ++ C T+  VW  +   F +++ AR + +  +L T +KG   + +   +  +L+D+LAA 
Sbjct: 112 VVKCLTSRDVWTTLERMFTAQSRARSMHIHYQLATLRKGDSSIADYYHRFINLIDTLAAI 171

Query: 65  GRKVTHDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNM-NINV 124
            + V H + +  +LA LGSEFDS V+ +  +     L  +Y  LLS E  +S N  ++++
Sbjct: 172 DQPVPHHEQLSFLLAGLGSEFDSLVTSVKTQFHPVPLEDIYGHLLSHELRLSHNQPSVDL 231

Query: 125 DGCVPT-VHLATQS---KGKNSIQDSGYHDQSSGNMNSKWKGKGKKN-----GKPQCQLC 184
                  VH  T +   +G++S+  +    + + N N + +G+G+ N      +P CQ+C
Sbjct: 232 SNASANFVHKGTSNQSGRGRSSLNFNSNRGRPNWN-NQRGRGRGRSNFSNTSNRPVCQVC 291

Query: 185 SKIGHTALRCYYRFERGFQGPNSQYSNNTGSTSTQHQSFPTQNANAFVLQNDCNRDNHWY 244
            KIGH AL+CY+RF       N+ Y+ +T           T    A +       D +WY
Sbjct: 292 HKIGHVALQCYHRF-------NNSYTMDT-----------TPQMQALLATQQQVVDPNWY 351

Query: 245 PDSGASNHVTHNFANMSI-VEEYQGENRVHIGDGSG------------------------ 304
           PDSGA++H+TH+ AN+++  +EY    ++ +G+GSG                        
Sbjct: 352 PDSGATHHLTHDLANLNVRADEYSSSKQIRVGNGSGFEASSVARADPSPVAIDGLLSTLQ 411

Query: 305 ------------------------------------------------------------ 364
                                                                       
Sbjct: 412 SDFAVKNLGPLKFFLGIEVIPNAHGVILSQQRYIKDILTRTKMLEAKPITSPMASSTTLS 471

Query: 365 --------------------------------------------TITH------------ 424
                                                       T+TH            
Sbjct: 472 VHDGEPFPDHTLFRSTVGALQYLSITRPDIAFIVNKLSQFMHKPTLTHWQAVKRLVRYLK 531

Query: 425 -----GLVFHKPQNLVIEGYTDADWGSDPDDRKSTLGYCVYFGGNLIQWEAKKQAIKSRS 453
                GL   +  +  ++ ++DADW  D DDR+S   +CV+ G NLI W  +KQA  +RS
Sbjct: 532 DTIKFGLQIFRSSSTALQAFSDADWAGDKDDRRSIGSFCVFLGKNLISWNCRKQATVARS 591

BLAST of Sed0000135 vs. ExPASy TrEMBL
Match: A0A6J1C6N9 (dr1-associated corepressor homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.1e-61
Identity = 137/292 (46.92%), Postives = 186/292 (63.70%), Query Frame = 0

Query: 5   MIDCETASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDSLAAA 64
           MI C TA  VW+I+ + + SRNLARV+ LK KL+  KKG++ L +   K+K+LVDSLAAA
Sbjct: 23  MIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAA 82

Query: 65  GRKVTHDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNMNINVD 124
           G+KVT +DH+MHIL  L SEF+STVSVI+ + +T +L +VYSLLLS E    RN +IN D
Sbjct: 83  GKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNERN-SINTD 142

Query: 125 GCVPTVHLATQSKGKNSIQDSG------YHDQSSGNMNSKWKGKGKKNGKPQCQLCSKIG 184
           G +P+V+L  Q+K  NS Q          +++S  + N  ++     N +PQCQ+  K G
Sbjct: 143 GTLPSVNLTQQTKNSNSAQSIDGQRPYMQNNRSKNSGNPNFRRNWNSNNRPQCQIYGKFG 202

Query: 185 HTALRCYYRFERGFQGPNSQ--------------YSNNTGSTSTQHQSF-----PTQNAN 244
           HTALRCY RFE+ F GPN Q               ++N  +   Q Q+F     P  N++
Sbjct: 203 HTALRCYLRFEKTFLGPNGQSHMQHKFSGGSNSSINSNMTAFGNQQQAFTNGFQPNSNSH 262

Query: 245 --AFVLQNDCNRDNHWYPDSGASNHVTHNFANMSIVEEYQGENRVHIGDGSG 270
             AF+ Q D NRD +WYPDSGA+NHVT NF N++   EY G+N+V IG+G+G
Sbjct: 263 MAAFLAQQDFNRDTNWYPDSGATNHVTSNFNNLATSTEYTGDNQVRIGNGTG 313

BLAST of Sed0000135 vs. ExPASy TrEMBL
Match: A0A6J1C8R2 (dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.8e-60
Identity = 137/296 (46.28%), Postives = 185/296 (62.50%), Query Frame = 0

Query: 5   MIDCETASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDSLAAA 64
           MI C TA  VW+I+ + + SRNLARV+ LK KL+  KKG++ L +   K+K+LVDSLAAA
Sbjct: 23  MIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAA 82

Query: 65  GRKVTHDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNMNINVD 124
           G+KVT +DH+MHIL  L SEF+STVSVI+ + +T +L +VYSLLLS E    RN +IN D
Sbjct: 83  GKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNERN-SINTD 142

Query: 125 GCVPTVHLATQSKGKNSIQDSG------YHDQSSGNMNSKWKGKGKKNGKPQCQLCSKIG 184
           G +P+V+L  Q+K  NS Q          +++S  + N  ++     N +PQCQ+  K G
Sbjct: 143 GTLPSVNLTQQTKNSNSAQSIDGQRPYMQNNRSKNSGNPNFRRNWNSNNRPQCQIYGKFG 202

Query: 185 HTALRCYYRFERGFQGPNSQ--------------YSNNTGSTSTQHQSF-----PTQNAN 244
           HTALRCY RFE+ F GPN Q               ++N  +   Q Q+F     P  N++
Sbjct: 203 HTALRCYLRFEKTFLGPNGQSHMQHKFSGGSNSSINSNMTAFGNQQQAFTNGFQPNSNSH 262

Query: 245 --AFVLQNDCNRDNHWYPDSGASNHVTHNFANMSIVEEYQGENRVHIGDGSGTITH 274
             AF+ Q D NRD +WYPDSGA+NHVT NF N++   EY G+N+V IG+G     H
Sbjct: 263 MAAFLAQQDFNRDTNWYPDSGATNHVTSNFNNLATSTEYTGDNQVRIGNGPSNWPH 317

BLAST of Sed0000135 vs. ExPASy TrEMBL
Match: A5CBD3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_021887 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 9.8e-59
Identity = 171/641 (26.68%), Postives = 283/641 (44.15%), Query Frame = 0

Query: 1   MSNSMIDCETASHVWKIVNDRFASRNLARVLDLKMKLQTTKKGSMKLDENLAKIKSLVDS 60
           M   +++C+T++ VW ++   F S + AR L L+  LQ+ KKG++ +++ + K++++ D 
Sbjct: 100 MYGHVVNCQTSTEVWSVLEKLFVSDSKARTLQLRFMLQSLKKGALSINDYVLKMRNIADM 159

Query: 61  LAAAGRKVTHDDHVMHILASLGSEFDSTVSVIAEKDETPSLHKVYSLLLSQENGISRNMN 120
           L+ +G+ V ++D +++IL  LG EF++ V  I  + E  SL +V+ LL S E  + +   
Sbjct: 160 LSTSGKPVPYEDLILYILGGLGPEFETIVVNITSRSEAISLQEVHYLLQSHEIRLEQLSV 219

Query: 121 INVDGCVPTVHLATQSKGKNSIQDSGYHD-QSSGNMNSKWKGKGKKNGKPQ---CQLCSK 180
            +V    P  H  T       +Q+S  +D Q  G+ N  ++ +  +N +      QLC K
Sbjct: 220 ASVIDVPPAAHTIT-----GGVQNSNTNDGQFRGSSNRNFRPRNVRNPQTSRIVYQLCGK 279

Query: 181 IGHTALRCYYRFERGFQGP----NSQYSNNTGSTSTQHQ--------------------S 240
           +GHTA++C++ F+  FQ P    N Q+S+   S   Q Q                    S
Sbjct: 280 MGHTAMKCFHHFDVYFQSPPRAQNQQFSSLHQSQQPQLQPPPLQPQMQPQYYSTGPLVPS 339

Query: 241 FPTQNA-----------NAFVLQNDCNRDNHWYPDSGASNHVT----------------- 300
            P QN+           +A+++  D + +  W+  SGA++H+T                 
Sbjct: 340 RPIQNSHQQHDSTNTSHHAYIVTPDLDSNTSWFFVSGATHHMTTDSNTLDVSDHYFGTDF 399

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 400 SEDTNVFLPHLATTPSTINKQPATPSIGYSLQAPRAWFHKLREALHTWGFISSTLDTSLF 459

Query: 361 -----------------------------------HN---FANMSIVEEYQGENRVHIGD 420
                                              HN     ++ +V+++ G   + I  
Sbjct: 460 IYKHNDNFLLLLVYVDDLLITGNNAPLIQTLIQDLHNRFALKDLGLVKDFLGFEALRITT 519

Query: 421 G--------------------------------------------SGTITHGLVFHKPQN 444
           G                                             GT+ HGL F    +
Sbjct: 520 GLHLTQSKYMIDLLTRTKMHSSKPVPTPMKCSPQTSCSLRVLRYLKGTVHHGLHFTPASS 579

BLAST of Sed0000135 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 120.6 bits (301), Expect = 3.4e-27
Identity = 58/155 (37.42%), Postives = 96/155 (61.94%), Query Frame = 0

Query: 269 GTITHGLVFHKPQNLVIEGYTDADWGSDPDDRKSTLGYCVYFGGNLIQWEAKKQAIKSRS 328
           GT+  GL +     + ++ ++DA + S  D R+ST GYC++ G +LI W++KKQ + S+S
Sbjct: 426 GTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKS 485

Query: 329 STEAEYRSLAHVAAELVWLKALFKDLNILVLTKPVVWCDNLSAVHLSANPVLHSRTKHVE 388
           S EAEYR+L+    E++WL   F++L + +    +++CDN +A+H++ N V H RTKH+E
Sbjct: 486 SAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIE 545

Query: 389 IDIYFVRDLMLQQQVYIRHLPAAAQVADIFTKPLS 424
            D + VR+  + Q   + +   A    D FT+ LS
Sbjct: 546 SDCHSVRERSVYQAT-LSYSFQAYDEQDGFTEYLS 579

BLAST of Sed0000135 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-18
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 269 GTITHGLVFHKPQNLVIEGYTDADWGSDPDDRKSTLGYCVYFGGNLIQWEAKKQAIKSRS 328
           GTI HGL  HK   L ++ + D+DW      R+ST G+C + G N+I W AK+Q   SRS
Sbjct: 148 GTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRS 207

Query: 329 STEAEYRSLAHVAAELVWLKA 350
           STE EYR+LA  AAEL W  A
Sbjct: 208 STETEYRALALTAAELTWSSA 228

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAN61537.15.0e-6528.01hypothetical protein VITISV_012372 [Vitis vinifera][more]
XP_022136882.11.3e-6046.92dr1-associated corepressor homolog isoform X1 [Momordica charantia][more]
XP_022136883.13.7e-6046.28dr1-associated corepressor homolog isoform X2 [Momordica charantia][more]
CAN77775.12.0e-5826.68hypothetical protein VITISV_021887 [Vitis vinifera][more]
XP_022157847.11.4e-5659.67uncharacterized protein LOC111024461 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Q94HW29.2e-3841.38Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.9e-3543.50Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041466.6e-2836.71Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P109787.1e-2235.42Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P925191.8e-1750.62Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A5BLT72.4e-6528.01Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera... [more]
A0A2N9F6Q31.7e-6328.31Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10725 PE=4 SV=1[more]
A0A6J1C6N96.1e-6146.92dr1-associated corepressor homolog isoform X1 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1C8R21.8e-6046.28dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=... [more]
A5CBD39.8e-5926.68Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera... [more]
Match NameE-valueIdentityDescription
AT4G23160.13.4e-2737.42cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.11.3e-1850.62DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 4..113
e-value: 6.9E-16
score: 58.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..166
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 5..267
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 5..267
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 286..424
e-value: 8.06437E-68
score: 210.788
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 281..392

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0000135.1Sed0000135.1mRNA