Sed0000106 (gene) Chayote v1

Overview


Name	Sed0000106
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nucleoid-associated protein
Location	LG08: 3925070 .. 3929014 (+)
RNA-Seq Expression	Sed0000106
Synteny	Sed0000106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCAACAATATCTGTGAGTGCTCAACTATCAAATCTTCGAGGAATTTCCGATTGGAATAAACGAAGTCAGTACCATTCTGTAACTCTTTTGCTCTCTGAACTTTTTCATTTTCTGTTTCCTGATAAGACCTAGAAATTTGGAAGTATATGGTTTAGGTTGATTGTTTTGCCTCTGAATTGAAGTGATTGCTTAGAATTTGGTTCTGTATTGCGTATTGTGTAGCCATCTCGTAACCGCTAAATCGAATGGACGGATCTAAGTTGGTATTGCGTAGTTCATCCGGAAGATTTGCCGATCGCTTGATGTTTAGTCCTTAGATTGAACTGTCTGGCAGTGTCCTTAGTTCTTATTATTCATTGGGTTTGGTTCATTTCTGATCAAGAATTATTGTTAGCTTTGTAGAATCAAAGTTAATTTGGGATTCAAAGCTCAAGTTTTCAATTAGTGCCTTCGAGCGGTGGCACAATGGTTGAAAACTGGGGCTTTGAAGGCATGCTCCCTTCAAGATCTTAGGTTCGAGGTTTACTTGTGACATTACTCATTTGATGTCTCTTGGTGCCTAGCCTAGGGGATGGGTGTGGTTATCCTTGTTTAAAAAAAAAGGGGCAATTCTTGAGTTTTTTTTTTTTTCGAAACGGGGACATTGAAGCTTTGCTCCATTACATTCGGGCTAGCCACCTCTGTCTTTAGGCCAGGCACCGGGAGACAGATGCTTTATGTGTACAGTATTTGTATAAAGAACATGTAAGAAAAAGAACGTGATCTGGGAAATTAACGTGAGAACTAGTTAATGAGTTTGGATAAGCACCAAAACTTTTTAGCTCTAGAATTAACTGTTAGATTATTCACCTGAGCAACAGGTCATAGACAAGCAATTAAGTGAACCGGTCAAGTTTGATTCTTAATTCATAACCTGCAAGCTGACCTAGAAATTCCCGGATATAAAGAAAAGAAAACAATTCGTTACCTAGATTGAAGCCGGTTATCTGACAATGCCAATGTCAGAGCTGAATAAATCCCCAGCCTGCTTCTATAGAACTCCTCAACAGTGTTTTAAAAAGTCCAAAAAGATGTGCCTCAGGCTCAAAAAAGCCCCAGGCTCAATGTTGGCGCCTCGCCTATCTAGGCACACGCCTTTTCATAAAGTCCTCAGGCACGCAAGTTGCACGGCTGAGGACTTTTTTTATTTATTTAAAATCTAAGTTAAACGGTAATGTTTTACTCATTTTTCTCTATTTGTTTTTACAATTTCAAATTCAATCAACAATTACTTCAAAGTTTTATTTTAAAAAAAACAATTAAAATCTAATCGTCAACCATATGGGATGACTATGTAAAAAACTCTATATTGAAAGAGATTAATATATATGTTTTTTGTGTGTATACATGTATGCGCCTTTAGTAAAAAGCCCGCGCCTTTTGGTGCGCCTCAGGCTCCAAGGGGTCTTGAGCTTTTTAAAACACTGCTCCTCAACAAGGTAAGATATTAGCGTTGTATGACTTAGCAGTGCAAGAAGGCTTAAAATTTTTGTGGTTTTCTTTTATAATTTTGAATATAATACTTTGGACTATTGAAATGTGTATGCACCTGCAAAGTCCTGGTTTATTTCGAAAATTTCATTATGAAATTGGAGTCGAAGTGCACTTTTTGAGACATTTGATTGTACACACTATGCTTGTTAATGTATATTTTATCCATTTCCTGGTGCCTCTTACAGGTAACTTAAGTTCAATGTCAAATATAGTTGGTGCACGGATCCCATCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTGTGGTGGTCTATTTGGAGGGAAAAAGGAGGATGATGAGAAGAGTGATGATGCGCCTTCAAAGGTAGAATTTTGATCTGCAATATGATAAAAACAGTATAAGATGTGATATCATGCACAATAAATTTGTCATTTTCTGCAACTTAGAGGCCAAACACAAATGTCTCCCAAGGCCGAGGGACTGAAAATTACTTTTCCCTGCAAGGCCGAGGACCGTGGTGAACTATCGTTACTTACATACTAACTTTTTTTAGGCAGGAATATTTGGAAACATGCAGAAGTTATATGAGACAGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGTGTAAGACTAAACAAGTTCAATAAATATATTGTTACTTGAAGAGGTTTTTCTATGTTTTATTAAGTTGAACTTTTCTTTTCCTTACATGTTTCTGTTTTCCAGGGCTGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTATGTTCCGCCTTTCTCTCTTGTATCAAGTTCTTTTTTTTTTTGAAACAAGGGTAACCATTTCCACTTGGACCATAACTATGCGTGATTTCAAAAGTTGTTAGTGAAGTTAAGTGTTAGAATCTTGCTTAAGATTGTAAAATATTTTTTCCCTCTTGAATTTCGGTGGATAGTAAATAAGTACAGCTTCCAGAGAAATGCCTCTTATTTATTATTATTATTGCGTTACTTTGTTTTAAGATGATAAAGTGAATCCTATTTATTTATATTCAATCTGGTTGTCGTGGATTTAAAATCTTTTGAGGTTATATTCCTCAGATATTAATTGTTATGCACTATTCTTATAGTATTAATCGATAGTTCCATCGTTGATCCTCATGGACATGGAAAGTTCAGGGAACTTATAGAAGTATTGAACTCGCAATAAAATATTGTGGGTCTGAGTCATCTGACAATTGTTTTCATGCGAGACCTAACATAGCCTTTCCATTGGATATGATAAGATAACTATGGTTTAATTATAGAATGGATTCATATCATGTTTTCATGTCACCTCATATTTTTCTGTCGACCAATTTAGGTGACATTATCTGGGAACCAGCAACCTCTTCGCACAGAGATCACCCAGGCTGCAATGGAATTAGGACCGGAAGTGAGTATTCAGTATACTATAGTGCAATCTAACATTTGAAATTGCATTGCTCGAAATACGCATTTTTATATTGAACTTATATTTACATCCTAAAGTCACAACATATGCTGCACTGTCTTGTCCTGTCCTCAATCCAAGCATGGGATATATCTTCATCAAAATTGGTGCCTAGTGGAAGTATGACTCTAACACCTCACAAGTTTGAAAAATGGCTGGCTATATGACTAGGGCTGCCTGCATTGGAACTTGGCTGAAAAGAAATTGACAGCCATAATTGAATATTTAAGATTATACTTGGCAGTAACATTGTAAAAGTAAGGTCGCTAGTTATTATTATTAATTTTTTGGCTAAGAAACTATGGCTTTCATCGAAAAAAATTAAAGAATATACATGGACATACAAACAAACAAGCCCCAACAAAAAGGACTACGACCCTAATTATAGAAAACGACTTCAATCAACAATAATAAGACCAAGCTCATAACTACAAAAGTTCCTAGTAATCTTACTTCGTCGTTTGATCTCTTAACCTATCTAAAATTTTTATTATTCCTCTCAAATGGCCCCACAAAATTTAAAAATGAATAGCTTGCCACAAAATTTTGCGACTCTTGAAGGGGAGGATTCATAAGCAACTCCTTCCATTTATCCAACCATCTCTATTCCGAGCCCATAAAACAGAATTAAGATCGTTTCGATTGTAGTTAAGATTTCTGATTGTGGTTAATGATTGATATTCAAAATATTCAGAGCTTTACTTTCTTATGCAGAAACTGTCCCTTCTAGTTACTGAAGCATATCAGGATGCACACCAGAAGAGCGTTCAGGTTAGACTAGTTCCAATAGTGATCGAATTACAAAATCTTAGTTTCTGCTGAACAAACTGTTGGTTCTCTGATTCTCAGGCCATGAAGCAAAGAATGAGCGATCTTGCCCAGAGCTTAGGTATGCCCCAGGGTCTCAGTGAGGGATTGAAGTAG

mRNA sequence

ATGGCGTCAACAATATCTGTGAGTGCTCAACTATCAAATCTTCGAGGAATTTCCGATTGGAATAAACGAAGTAACTTAAGTTCAATGTCAAATATAGTTGGTGCACGGATCCCATCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTGTGGTGGTCTATTTGGAGGGAAAAAGGAGGATGATGAGAAGAGTGATGATGCGCCTTCAAAGGCAGGAATATTTGGAAACATGCAGAAGTTATATGAGACAGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGTGGCTGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTATCTGGGAACCAGCAACCTCTTCGCACAGAGATCACCCAGGCTGCAATGGAATTAGGACCGGAAAAACTGTCCCTTCTAGTTACTGAAGCATATCAGGATGCACACCAGAAGAGCGTTCAGGCCATGAAGCAAAGAATGAGCGATCTTGCCCAGAGCTTAGGTATGCCCCAGGGTCTCAGTGAGGGATTGAAGTAG

Coding sequence (CDS)

ATGGCGTCAACAATATCTGTGAGTGCTCAACTATCAAATCTTCGAGGAATTTCCGATTGGAATAAACGAAGTAACTTAAGTTCAATGTCAAATATAGTTGGTGCACGGATCCCATCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTGTGGTGGTCTATTTGGAGGGAAAAAGGAGGATGATGAGAAGAGTGATGATGCGCCTTCAAAGGCAGGAATATTTGGAAACATGCAGAAGTTATATGAGACAGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGTGGCTGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTATCTGGGAACCAGCAACCTCTTCGCACAGAGATCACCCAGGCTGCAATGGAATTAGGACCGGAAAAACTGTCCCTTCTAGTTACTGAAGCATATCAGGATGCACACCAGAAGAGCGTTCAGGCCATGAAGCAAAGAATGAGCGATCTTGCCCAGAGCTTAGGTATGCCCCAGGGTCTCAGTGAGGGATTGAAGTAG

Protein sequence

MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFGGKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQGLSEGLK

Homology

[Close]

BLAST of Sed0000106 vs. NCBI nr
Match: XP_022932159.1 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022965200.1 nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 174/189 (92.06%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MASTIS+SAQ+ NLRGISDW KRSNL+SMS I+G RI  YGPWKVEKNNRSLCVC GLFG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVC-GLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           GKKE++EKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL
Sbjct: 61  GKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           IKVTLSGNQQPLRTEIT+AAM+LGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM
Sbjct: 121 IKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           PQGLSEGLK
Sbjct: 181 PQGLSEGLK 188

[Close]

BLAST of Sed0000106 vs. NCBI nr
Match: KAG6587818.1 (Nucleoid-associated protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 334.7 bits (857), Expect = 5.1e-88
Identity = 173/189 (91.53%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MASTIS+SAQ+ NLRGISDW KRSNL+SMS I+G RI  YGPWKVEKN RSLCVC GLFG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNKRSLCVC-GLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           GKKE++EKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL
Sbjct: 61  GKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           IKVTLSGNQQPLRTEIT+AAM+LGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM
Sbjct: 121 IKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           PQGLSEGLK
Sbjct: 181 PQGLSEGLK 188

[Close]

BLAST of Sed0000106 vs. NCBI nr
Match: XP_023531577.1 (nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.9 bits (842), Expect = 2.8e-86
Identity = 172/189 (91.01%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MASTI++SAQ+ NLRGISDW KRSNL+SMS I+G RI  Y PWKVEKNNRSLCVC GLFG
Sbjct: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY-PWKVEKNNRSLCVC-GLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           GKKE++EKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL
Sbjct: 61  GKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           IKVTLSGNQQPLRTEIT+AAM+LGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM
Sbjct: 121 IKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           PQGLSEGLK
Sbjct: 181 PQGLSEGLK 187

[Close]

BLAST of Sed0000106 vs. NCBI nr
Match: KAG7023441.1 (Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.9 bits (834), Expect = 2.4e-85
Identity = 171/189 (90.48%), Postives = 179/189 (94.71%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MASTIS+SAQ+ NLRGISD  KRSNL+SMSNIVGARI  YGPWKVEKN+RSLCVC GLFG
Sbjct: 1   MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVC-GLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           GKKE+ EKSDDAPSKAGIFGNMQ LYETVRTAQQVVQVEAVRVQKELA AEFDGYCEGEL
Sbjct: 61  GKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           IKVTLSGNQQPLRTEIT+AAM+LGPEKLSLLVTEAY+DAHQKSVQAMKQRMSDLAQSLGM
Sbjct: 121 IKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           PQGL EGLK
Sbjct: 181 PQGLGEGLK 188

[Close]

BLAST of Sed0000106 vs. NCBI nr
Match: KAG7035685.1 (Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.1 bits (832), Expect = 4.0e-85
Identity = 171/189 (90.48%), Postives = 179/189 (94.71%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MASTIS+SAQ+ NLRGISDW KRSNL+SMS I+G R    GPWKVEKN RSLCVC GLFG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTR----GPWKVEKNKRSLCVC-GLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           GKKE++EKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL
Sbjct: 61  GKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           IKVTLSGNQQPLRTEIT+AAM+LGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM
Sbjct: 121 IKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           PQGLSEGLK
Sbjct: 181 PQGLSEGLK 184

[Close]

BLAST of Sed0000106 vs. ExPASy Swiss-Prot
Match: Q9M098 (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g30620 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.0e-51
Identity = 123/189 (65.08%), Postives = 138/189 (73.02%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MAST + +     L         +  SS  NIV       G      NNRSL V  GLFG
Sbjct: 1   MASTATNTDFFKTLLSPFSNGNAAQRSSRQNIVWLNRKQSG-----NNNRSLRV-NGLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           G K+D++  +D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELAVAEFDGYC+GEL
Sbjct: 61  GGKKDNK--EDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAVAEFDGYCQGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           +KVTLSGNQQP+RT+IT AAMELG EKLSLLVTEAY+DAH KSV AMK+RMSDLAQSLGM
Sbjct: 121 VKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMKERMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           P GL +GLK
Sbjct: 181 PPGL-DGLK 180

[Close]

BLAST of Sed0000106 vs. ExPASy Swiss-Prot
Match: O82230 (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STIC2 PE=1 SV=2)

HSP 1 Score: 203.0 bits (515), Expect = 3.0e-51
Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 43  WKVEKNNRSLCVCGGLFGGKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVR 102
           +K +   RSL V  GLFGG  +D+  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVR
Sbjct: 38  YKSKNGYRSLRV-NGLFGGGNKDN-NSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVR 97

Query: 103 VQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQK 162
           VQKELA AEFDGYC GEL+KVTLSGNQQP+RT+IT+AAMELG EKLS LVTEAY+DAH K
Sbjct: 98  VQKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAK 157

Query: 163 SVQAMKQRMSDLAQSLGMPQGLSEGLK 190
           SV AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 158 SVVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of Sed0000106 vs. ExPASy Swiss-Prot
Match: Q5N376 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-14
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 80  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITQA 139
           G M++L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 140 AMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 182
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of Sed0000106 vs. ExPASy Swiss-Prot
Match: Q8GMT0 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-14
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 80  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITQA 139
           G M++L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 140 AMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 182
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of Sed0000106 vs. ExPASy Swiss-Prot
Match: B7K422 (Nucleoid-associated protein PCC8801_2554 OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=PCC8801_2554 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-13
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 80  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITQA 139
           G +++L E    AQQ VQ  A ++Q+EL   E +G+ EG+L+KV +SGNQ+P    I   
Sbjct: 12  GKIKELQEAFAKAQQ-VQAGAQQLQQELEQMEIEGFSEGKLVKVIMSGNQEPRSVTILPE 71

Query: 140 AMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 182
           A+E G ++LS LVT+A +DA+ +S + M+ +M +L   L +P
Sbjct: 72  ALEKGADELSQLVTDAMKDAYTQSTETMRTKMEELTSGLNLP 112

[Close]

BLAST of Sed0000106 vs. ExPASy TrEMBL
Match: A0A6J1HN29 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465126 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.0e-89
Identity = 174/189 (92.06%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MASTIS+SAQ+ NLRGISDW KRSNL+SMS I+G RI  YGPWKVEKNNRSLCVC GLFG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVC-GLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           GKKE++EKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL
Sbjct: 61  GKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           IKVTLSGNQQPLRTEIT+AAM+LGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM
Sbjct: 121 IKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           PQGLSEGLK
Sbjct: 181 PQGLSEGLK 188

[Close]

BLAST of Sed0000106 vs. ExPASy TrEMBL
Match: A0A6J1EW88 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438476 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.0e-89
Identity = 174/189 (92.06%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MASTIS+SAQ+ NLRGISDW KRSNL+SMS I+G RI  YGPWKVEKNNRSLCVC GLFG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVC-GLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           GKKE++EKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL
Sbjct: 61  GKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           IKVTLSGNQQPLRTEIT+AAM+LGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM
Sbjct: 121 IKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           PQGLSEGLK
Sbjct: 181 PQGLSEGLK 188

[Close]

BLAST of Sed0000106 vs. ExPASy TrEMBL
Match: A0A6J1JDG0 (nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111485791 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.7e-84
Identity = 169/189 (89.42%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MASTIS+SAQ+ NLRGIS   KR+NL+SMSNIVGARI  YGPWKVEKN+RSLCVC GLFG
Sbjct: 1   MASTISLSAQVPNLRGISGLKKRNNLNSMSNIVGARISPYGPWKVEKNSRSLCVC-GLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           GKKE+ EKSDDAPSKAGIFGNMQ LYETVRTAQQVVQVEAVRVQKELA AEFDGYCEGEL
Sbjct: 61  GKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           IKVTLSGNQQPLRTEIT+AAM+LGPEKLSLLVTEAY+DAHQKSVQAMKQRMSDLAQSLGM
Sbjct: 121 IKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           PQGL EGLK
Sbjct: 181 PQGLGEGLK 188

[Close]

BLAST of Sed0000106 vs. ExPASy TrEMBL
Match: A0A0A0LWF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.2e-84
Identity = 171/189 (90.48%), Postives = 179/189 (94.71%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MASTIS+SAQL NLRGISD+ KRSNL+SMSNIVG R+  YGPWKVEKNNRSLCV  GLFG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVY-GLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           GKK D+EKSDDAPSKAGIFGNMQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGEL
Sbjct: 61  GKK-DEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           IKVTLSGNQQP+RTEIT+AAMELGPEKLSLLVTEAYQDAHQKSV AMKQRMSDLAQSLGM
Sbjct: 121 IKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           PQGLSEGLK
Sbjct: 181 PQGLSEGLK 187

[Close]

BLAST of Sed0000106 vs. ExPASy TrEMBL
Match: A0A5A7SUZ8 (Nucleoid-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00540 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.7e-84
Identity = 171/189 (90.48%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MASTIS+SAQL NLRGISD  KRSNL+ MSNIVG R+  YGPWKVEKNNRSLCV  GLFG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVY-GLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           GKK D+EKSDDAPSKAGIFGNMQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGEL
Sbjct: 61  GKK-DEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           IKVTLSGNQQP+RTEIT+AAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM
Sbjct: 121 IKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           PQGLSEGLK
Sbjct: 181 PQGLSEGLK 187

[Close]

BLAST of Sed0000106 vs. TAIR 10
Match: AT2G24020.1 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-52
Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 43  WKVEKNNRSLCVCGGLFGGKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVR 102
           +K +   RSL V  GLFGG  +D+  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVR
Sbjct: 38  YKSKNGYRSLRV-NGLFGGGNKDN-NSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVR 97

Query: 103 VQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQK 162
           VQKELA AEFDGYC GEL+KVTLSGNQQP+RT+IT+AAMELG EKLS LVTEAY+DAH K
Sbjct: 98  VQKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAK 157

Query: 163 SVQAMKQRMSDLAQSLGMPQGLSEGLK 190
           SV AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 158 SVVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of Sed0000106 vs. TAIR 10
Match: AT2G24020.2 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-52
Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 43  WKVEKNNRSLCVCGGLFGGKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVR 102
           +K +   RSL V  GLFGG  +D+  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVR
Sbjct: 36  YKSKNGYRSLRV-NGLFGGGNKDN-NSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVR 95

Query: 103 VQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQK 162
           VQKELA AEFDGYC GEL+KVTLSGNQQP+RT+IT+AAMELG EKLS LVTEAY+DAH K
Sbjct: 96  VQKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAK 155

Query: 163 SVQAMKQRMSDLAQSLGMPQGLSEGLK 190
           SV AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 156 SVVAMKERMSDLAQSLGMPPGLSEGMK 180

[Close]

BLAST of Sed0000106 vs. TAIR 10
Match: AT4G30620.1 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-52
Identity = 123/189 (65.08%), Postives = 138/189 (73.02%), Query Frame = 0


Query: 1   MASTISVSAQLSNLRGISDWNKRSNLSSMSNIVGARIPSYGPWKVEKNNRSLCVCGGLFG 60
           MAST + +     L         +  SS  NIV       G      NNRSL V  GLFG
Sbjct: 1   MASTATNTDFFKTLLSPFSNGNAAQRSSRQNIVWLNRKQSG-----NNNRSLRV-NGLFG 60

Query: 61  GKKEDDEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGEL 120
           G K+D++  +D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELAVAEFDGYC+GEL
Sbjct: 61  GGKKDNK--EDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAVAEFDGYCQGEL 120

Query: 121 IKVTLSGNQQPLRTEITQAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGM 180
           +KVTLSGNQQP+RT+IT AAMELG EKLSLLVTEAY+DAH KSV AMK+RMSDLAQSLGM
Sbjct: 121 VKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMKERMSDLAQSLGM 180

Query: 181 PQGLSEGLK 190
           P GL +GLK
Sbjct: 181 PPGL-DGLK 180

The following BLAST results are available for this feature:

BLAST of Sed0000106 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932159.1	1.0e-88	92.06	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita ...	[more]
KAG6587818.1	5.1e-88	91.53	Nucleoid-associated protein, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
XP_023531577.1	2.8e-86	91.01	nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp....	[more]
KAG7023441.1	2.4e-85	90.48	Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7035685.1	4.0e-85	90.48	Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0000106 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M098	3.0e-51	65.08	Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
O82230	3.0e-51	74.83	Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q5N376	1.3e-14	47.06	Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / ...	[more]
Q8GMT0	1.3e-14	47.06	Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain P...	[more]
B7K422	1.5e-13	41.18	Nucleoid-associated protein PCC8801_2554 OS=Rippkaea orientalis (strain PCC 8801...	[more]

BLAST of Sed0000106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HN29	5.0e-89	92.06	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbit...	[more]
A0A6J1EW88	5.0e-89	92.06	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbit...	[more]
A0A6J1JDG0	1.7e-84	89.42	nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucurbita maxima OX...	[more]
A0A0A0LWF8	2.2e-84	90.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1	[more]
A0A5A7SUZ8	3.7e-84	90.48	Nucleoid-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Sed0000106 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24020.1	2.1e-52	74.83	Uncharacterised BCR, YbaB family COG0718	[more]
AT2G24020.2	2.1e-52	74.83	Uncharacterised BCR, YbaB family COG0718	[more]
AT4G30620.1	2.1e-52	65.08	Uncharacterised BCR, YbaB family COG0718	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	GENE3D	3.30.1310.10		coord: 78..186 e-value: 1.6E-30 score: 107.3
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	SUPERFAMILY	82607	YbaB-like	coord: 94..182
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PFAM	PF02575	YbaB_DNA_bd	coord: 93..177 e-value: 1.9E-16 score: 60.1
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PANTHER	PTHR33449	NUCLEOID-ASSOCIATED PROTEIN YBAB	coord: 6..189
None	No IPR available	PANTHER	PTHR33449:SF6	SUBFAMILY NOT NAMED	coord: 6..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000106.1	Sed0000106.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding