Sed0000016 (gene) Chayote v1

Overview


Name	Sed0000016
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG14: 2361233 .. 2361943 (+)
RNA-Seq Expression	Sed0000016
Synteny	Sed0000016

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACACCATTTTGATCACTACACTTCATTCTCTCTCTTGTTTCTCTCTCTAAATTTTTTTTTTTTTTTGGGTTCTTCCATGGAAGATGATTCGGAGGAGGTATTCGATGCGGCGCAGCAGTTGATGCAGCTGAGCAACGACGATGCCGGTAGCAGCAATGTCGTCGCGACCGGGAACGACAAGAACGATAAGAACGTGAGGATTAAGGTTCACGGTAGCGGAGAGGAGGAGGTTGATCAGAAGCGATGCCAAATCGAGGCGTCGATCTGGTTGAAGATCGAAGAGATTTTCGGGAAAGATGACGAAGAAGAAGAAGAATGCGGTTCGATACGTCGTCCTAAGAAGAGACGATTTCGATCCCTTGAAAGTATATATATGAAGACTAAGCCTATTGCCAATGGTAGATTCTCCGGCAACCGCGGTGGCGGTCTCGGGGTTTTAACGGGTTTGTGGAATTAACTTAGAATCAACTTGATCCAACATGAGCATAATTCAATAGATATGAAGGTTTAATGTTTTAATAACTTCTTGAATTATGTTTATGTTGGTTTGAAAATGTTAGGAAATTGAATGTTTTTGCCTTTGTGTTTAATTTTGGATATGAAGTTTGATAATTGATGGTAGGTAGAAGTTAATTATATGTACATTTGCCATTGGAAGTAGAAATTAAGAGATACAAAAGGTTGAATGAAGAAAATAATATAATCCCAT

mRNA sequence

AGACACCATTTTGATCACTACACTTCATTCTCTCTCTTGTTTCTCTCTCTAAATTTTTTTTTTTTTTTGGGTTCTTCCATGGAAGATGATTCGGAGGAGGTATTCGATGCGGCGCAGCAGTTGATGCAGCTGAGCAACGACGATGCCGGTAGCAGCAATGTCGTCGCGACCGGGAACGACAAGAACGATAAGAACGTGAGGATTAAGGTTCACGGTAGCGGAGAGGAGGAGGTTGATCAGAAGCGATGCCAAATCGAGGCGTCGATCTGGTTGAAGATCGAAGAGATTTTCGGGAAAGATGACGAAGAAGAAGAAGAATGCGGTTCGATACGTCGTCCTAAGAAGAGACGATTTCGATCCCTTGAAAGTATATATATGAAGACTAAGCCTATTGCCAATGGTAGATTCTCCGGCAACCGCGGTGGCGGTCTCGGGGTTTTAACGGGTTTGTGGAATTAACTTAGAATCAACTTGATCCAACATGAGCATAATTCAATAGATATGAAGGTTTAATGTTTTAATAACTTCTTGAATTATGTTTATGTTGGTTTGAAAATGTTAGGAAATTGAATGTTTTTGCCTTTGTGTTTAATTTTGGATATGAAGTTTGATAATTGATGGTAGGTAGAAGTTAATTATATGTACATTTGCCATTGGAAGTAGAAATTAAGAGATACAAAAGGTTGAATGAAGAAAATAATATAATCCCAT

Coding sequence (CDS)

ATGGAAGATGATTCGGAGGAGGTATTCGATGCGGCGCAGCAGTTGATGCAGCTGAGCAACGACGATGCCGGTAGCAGCAATGTCGTCGCGACCGGGAACGACAAGAACGATAAGAACGTGAGGATTAAGGTTCACGGTAGCGGAGAGGAGGAGGTTGATCAGAAGCGATGCCAAATCGAGGCGTCGATCTGGTTGAAGATCGAAGAGATTTTCGGGAAAGATGACGAAGAAGAAGAAGAATGCGGTTCGATACGTCGTCCTAAGAAGAGACGATTTCGATCCCTTGAAAGTATATATATGAAGACTAAGCCTATTGCCAATGGTAGATTCTCCGGCAACCGCGGTGGCGGTCTCGGGGTTTTAACGGGTTTGTGGAATTAA

Protein sequence

MEDDSEEVFDAAQQLMQLSNDDAGSSNVVATGNDKNDKNVRIKVHGSGEEEVDQKRCQIEASIWLKIEEIFGKDDEEEEECGSIRRPKKRRFRSLESIYMKTKPIANGRFSGNRGGGLGVLTGLWN

Homology

[Close]

BLAST of Sed0000016 vs. NCBI nr
Match: KAG6595108.1 (hypothetical protein SDJN03_11661, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 3.0e-28
Identity = 76/114 (66.67%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 4   DSEEVFDAAQQLMQLSNDDAGSSNVVATGNDKNDKNVRIKVHGSG----EEEVDQKRCQI 63
           +SEEV DAAQQL+QLSN+D  SSNVV   N K  K ++ K  G G    EEEVDQKRCQI
Sbjct: 11  NSEEVLDAAQQLVQLSNEDDSSSNVVTAENKKKKKIMKKKEDGGGDGGEEEEVDQKRCQI 70

Query: 64  EASIWLKIEEIFGKDDEEEEE-CGSIRRPKKRRFRSLESIYMKTKPIANGRFSG 113
           E SI  KIEEIFGKDD+++EE CGSI RP KRRFRS++SIYM TKP+ N RFSG
Sbjct: 71  ETSICSKIEEIFGKDDDDDEEGCGSICRPNKRRFRSIQSIYMNTKPLVNARFSG 124

[Close]

BLAST of Sed0000016 vs. NCBI nr
Match: XP_022133223.1 (uncharacterized protein LOC111005872 [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 4.8e-26
Identity = 80/123 (65.04%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 1   MEDDS------EEVFDAAQQLMQLSNDDAGSSNVVATGNDKNDKNVRIKVHGSGEEEVDQ 60
           ME++S      EEV  AAQQLMQLSN+D  SSNVV     KN+K  +      GEEEVDQ
Sbjct: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKKKNNK--KRGGGDGGEEEVDQ 60

Query: 61  KRCQIEASIWLKIEEIFGKDDEE-EEECGSIRRPKKR--RFRSLESIYMKTKPIANGRFS 115
           KRCQIEASIW KIEEIFGK++EE EE+  SI RPKKR  RFRS++SIYM TKPI N RFS
Sbjct: 61  KRCQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINARFS 120

[Close]

BLAST of Sed0000016 vs. NCBI nr
Match: XP_031742655.1 (uncharacterized protein LOC116404425 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 7.7e-24
Identity = 73/118 (61.86%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 4   DSEEVFDAAQQLMQLSNDDAGSSNVVATGNDKNDKNVRIKVHGSG-----EEEVDQKRCQ 63
           +SEEV  AAQQLMQLSNDD  S+  V     K +K       G G     EEEVDQKRCQ
Sbjct: 10  NSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCREEEVDQKRCQ 69

Query: 64  IEASIWLKIEEIFGKDDEEEEEC---GSI--RRPKKRRFRSLESIYMKTKPIANGRFS 112
           IE+S+WLKIEEIFGKD+E +  C    SI   RPKKRRFRS++SIYMKTKPI NGRFS
Sbjct: 70  IESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQSIYMKTKPITNGRFS 127

[Close]

BLAST of Sed0000016 vs. NCBI nr
Match: KAG6604263.1 (hypothetical protein SDJN03_04872, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-23
Identity = 81/136 (59.56%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 2   EDDSEEVFDAAQQLMQLS-----NDDAGSSNVVATGNDKNDKNVRIKVHGSG------EE 61
           ED SEEV  AAQ LMQLS     +DD  SSNVV     K +K ++ K HG        EE
Sbjct: 3   EDSSEEVLVAAQLLMQLSIEDDDDDDNCSSNVVVAAEKKKNKKLK-KGHGGDRGDGGEEE 62

Query: 62  EVDQKRCQIEASIWLKIEEIFGKDDEEEEECGSIRRPKKRRFRSLESIYMKTKPIANGRF 118
           EVDQKR QIE SIWLKIEEIFGKDD EEE+  SI RPKKRRFRSL+SIY+ TKPI NGRF
Sbjct: 63  EVDQKRYQIETSIWLKIEEIFGKDD-EEEDFNSICRPKKRRFRSLQSIYITTKPIGNGRF 122

[Close]

BLAST of Sed0000016 vs. NCBI nr
Match: KAG7034419.1 (hypothetical protein SDJN02_04148, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.2 bits (295), Expect = 5.0e-23
Identity = 80/136 (58.82%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 2   EDDSEEVFDAAQQLMQLS-----NDDAGSSNVVATGNDKNDKNVRIKVHGSG------EE 61
           ED SEEV  AAQ LMQLS     +DD   SNVV    +K +K ++ K HG        EE
Sbjct: 3   EDSSEEVLVAAQLLMQLSIEDDDDDDNCGSNVVVAAENKKNKKLK-KGHGGDRGDGGEEE 62

Query: 62  EVDQKRCQIEASIWLKIEEIFGKDDEEEEECGSIRRPKKRRFRSLESIYMKTKPIANGRF 118
           EVDQKR QIE SIWLKIEEIFGKDD EEE+  SI RPKKRRFRSL+SIY+ TKPI NGRF
Sbjct: 63  EVDQKRYQIETSIWLKIEEIFGKDD-EEEDFNSICRPKKRRFRSLQSIYITTKPIGNGRF 122

[Close]

BLAST of Sed0000016 vs. ExPASy TrEMBL
Match: A0A6J1BYI0 (uncharacterized protein LOC111005872 OS=Momordica charantia OX=3673 GN=LOC111005872 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.3e-26
Identity = 80/123 (65.04%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 1   MEDDS------EEVFDAAQQLMQLSNDDAGSSNVVATGNDKNDKNVRIKVHGSGEEEVDQ 60
           ME++S      EEV  AAQQLMQLSN+D  SSNVV     KN+K  +      GEEEVDQ
Sbjct: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKKKNNK--KRGGGDGGEEEVDQ 60

Query: 61  KRCQIEASIWLKIEEIFGKDDEE-EEECGSIRRPKKR--RFRSLESIYMKTKPIANGRFS 115
           KRCQIEASIW KIEEIFGK++EE EE+  SI RPKKR  RFRS++SIYM TKPI N RFS
Sbjct: 61  KRCQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINARFS 120

[Close]

BLAST of Sed0000016 vs. ExPASy TrEMBL
Match: A0A6J1GFL5 (uncharacterized protein LOC111453726 OS=Cucurbita moschata OX=3662 GN=LOC111453726 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.5e-22
Identity = 79/136 (58.09%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 2   EDDSEEVFDAAQQLMQLS-----NDDAGSSNVVATGNDKNDKNVRIKVHGSG------EE 61
           ED SEEV  AAQ LMQLS     +DD  SSNVV       +K ++ K HG        EE
Sbjct: 3   EDSSEEVLVAAQLLMQLSIEDDDDDDNCSSNVVVAVEKMKNKKLK-KGHGGDRGDGGEEE 62

Query: 62  EVDQKRCQIEASIWLKIEEIFGKDDEEEEECGSIRRPKKRRFRSLESIYMKTKPIANGRF 118
           EVDQKR QIE SIWLKIEEIFGKDD EE++  SI RPKKRRFRSL+SIY+ TKPI NGRF
Sbjct: 63  EVDQKRYQIETSIWLKIEEIFGKDD-EEQDFNSICRPKKRRFRSLQSIYVTTKPIGNGRF 122

[Close]

BLAST of Sed0000016 vs. ExPASy TrEMBL
Match: A0A5A7SLI9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00160 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 71/113 (62.83%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 4   DSEEVFDAAQQLMQLSNDDAGSSNVVATGNDKNDKNVRIKVHGSGEEEVDQKRCQIEASI 63
           +SEEV  AAQQLMQLSNDD  SSNV      K +K       G  EEEVDQKRCQIE+SI
Sbjct: 10  NSEEVLGAAQQLMQLSNDD-NSSNVDVVVAAKKNKKKDCCGGGGREEEVDQKRCQIESSI 69

Query: 64  WLKIEEIFGKDD----EEEEECGSIRRPKKRRFRSLESIYMKTKP-IANGRFS 112
           WLKIEEIFGKD+    +         RPKKRRFRS++SIYMKTKP I NGRFS
Sbjct: 70  WLKIEEIFGKDEGGCCDHHHSSIINSRPKKRRFRSIQSIYMKTKPMITNGRFS 121

[Close]

BLAST of Sed0000016 vs. ExPASy TrEMBL
Match: A0A0A0KFU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486710 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 59/103 (57.28%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 4   DSEEVFDAAQQLMQLSNDDAGSSNVVATGNDKNDKNVRIKVHGSG-----EEEVDQKRCQ 63
           +SEEV  AAQQLMQLSNDD  S+  V     K +K       G G     EEEVDQKRCQ
Sbjct: 10  NSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCREEEVDQKRCQ 69

Query: 64  IEASIWLKIEEIFGKDDEEEEEC---GSI--RRPKKRRFRSLE 97
           IE+S+WLKIEEIFGKD+E +  C    SI   RPKKRRFRS++
Sbjct: 70  IESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQ 112

[Close]

BLAST of Sed0000016 vs. ExPASy TrEMBL
Match: A0A6J5V3C5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS38002 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.8e-09
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 5   SEEVFDAAQQLMQLSNDDAGSSNVVATGNDKNDKNVRIKVHGSGEEEVDQKRCQIEASIW 64
           +E    AAQQLMQLS++D  ++N  ++ + +++KN + +      EEVDQ R  I   IW
Sbjct: 16  TESELAAAQQLMQLSDED-NNNNSSSSSSSRSNKNTKHE-----GEEVDQ-RPLINVIIW 75

Query: 65  LKIEEIFGKDDEEEEECGSIRRPKKRRFRSLESIYMKTKPIANGRFSGNR 115
            KIEEIFGK+++       + RPKKRR+RSL SIY+ +KP+  G   G +
Sbjct: 76  AKIEEIFGKEED-------VDRPKKRRYRSLASIYLTSKPVNAGSAHGKK 111

[Close]

BLAST of Sed0000016 vs. TAIR 10
Match: AT5G09876.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 8.5e-05
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 67  IEEIFGKDD-EEEEEC----------GSIRRPKKRRFRSLESIYMKTKPI 106
           IEEIFGKDD  ++++C           S+++ KK+++R++ESIYM T+PI
Sbjct: 51  IEEIFGKDDSHDQDQCTEEMVMLRVISSLKKEKKKKYRTIESIYMATRPI 100

The following BLAST results are available for this feature:

BLAST of Sed0000016 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595108.1	3.0e-28	66.67	hypothetical protein SDJN03_11661, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022133223.1	4.8e-26	65.04	uncharacterized protein LOC111005872 [Momordica charantia]	[more]
XP_031742655.1	7.7e-24	61.86	uncharacterized protein LOC116404425 [Cucumis sativus]	[more]
KAG6604263.1	2.9e-23	59.56	hypothetical protein SDJN03_04872, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034419.1	5.0e-23	58.82	hypothetical protein SDJN02_04148, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0000016 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0000016 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYI0	2.3e-26	65.04	uncharacterized protein LOC111005872 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1GFL5	3.5e-22	58.09	uncharacterized protein LOC111453726 OS=Cucurbita moschata OX=3662 GN=LOC1114537...	[more]
A0A5A7SLI9	1.3e-21	62.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KFU1	1.9e-15	57.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486710 PE=4 SV=1	[more]
A0A6J5V3C5	5.8e-09	42.73	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS38002 PE=4 S...	[more]

BLAST of Sed0000016 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09876.1	8.5e-05	44.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000016.1	Sed0000016.1	mRNA