Sed0000013 (gene) Chayote v1

Overview


Name	Sed0000013
Type	gene
Organism	Sechium edule (Chayote v1)
Description	zf-LSD1 domain-containing protein
Location	LG02: 51087604 .. 51088771 (+)
RNA-Seq Expression	Sed0000013
Synteny	Sed0000013

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTATTCTCACGCGCCGCCGCCGATGCTGGTGAACTGCTCCGGCTGCCGGACTCCTCTCCAGCTGCCGCCGGGTGCTCCGTCGATTCGGTGCGCCATATGCAAGGCGGTGACGCAGGTCATGGACCCGCGGTCCGTCCATGCGCCGTCGCCGGCTCCGTCGCCGTACAACCACGCGCCGCCGGGAGCCCCCGCTCATCCTCACGGCCGTAAAAGGGCTGTGATTGTTGGGATATCTTACAGGTACTCGAGACATGAGCTCAAGGGCTGCCTCAACGATGCTAAGTGTATGCGTTATCTCTTGACCAATAAATTCCGTTTTCCAGAAGATTCTATCCTCATGCTTACAGGTATTTTCTCCCCTAATATCTCTTTTTCTCTTAGTTTCTTCATTGGATTCACTTTTGTTTATTCTAATATCATCAATCCTCGCGGGGTGTCCGGTAGATACTCGGAGTCTCTAAAATATGCTCTTTTGGAAGTTATAGATTTGAAACTCACGAGTGAGCTTAATTGTTAAATTCATTGGCCTTGCGACGGACATAGATGCCCCGACTACGTAGAGGACTGAATTTTCGATTCCCGGTTATAAATATGAAATTACCAAGAAGGGGAAAATCCAGGGAGAAAGTTACAAAAGATTTTTCCAATGTGAAGTAGCATTAGAGTCTTGAGATTTCGATATGTTGTTGATGGTTTGGTATAATTTCTGATCTCATAGCCTTCCTTGGGTCTTTAAGCAAGCATATTGCACTGACAGAAAATTGGTTGGTAGTAAACGAAATGCAAAATTTATGCTTTTATGAAGATATTTATCTTTGCTCCAATTTCAAATTATTGGTAGGGGTGTATAAAAAAACCGGTAACCCGAGCAACCCGGACTACTCAACCCAAATCGTAAGGGTTGGGTTGGGTTATGATTTTGTAGTTTTTGTTAAGTTGGGTTGGTTCTTGGGTTGGCAAATTTTTGGCTCGTTCAACGCAACCCAACCCGGACTAAGAATATTATATATAATATGTGTGTATATAAGATAAATAAATAAGATAGATTCTTACCATATTTTGTAAGTCTTCTAAAAAAAAGAATGTGCACTAATAAGATAGGTAATAGGTTGAAATATAGAAACATACATTTTTTTAAACATATTTGTGGACCTATGGATTGA

mRNA sequence

ATGTTCTATTCTCACGCGCCGCCGCCGATGCTGGTGAACTGCTCCGGCTGCCGGACTCCTCTCCAGCTGCCGCCGGGTGCTCCGTCGATTCGGTGCGCCATATGCAAGGCGGTGACGCAGGTCATGGACCCGCGGTCCGTCCATGCGCCGTCGCCGGCTCCGTCGCCGTACAACCACGCGCCGCCGGGAGCCCCCGCTCATCCTCACGGCCGTAAAAGGGCTGTGATTGTTGGGATATCTTACAGGTACTCGAGACATGAGCTCAAGGGCTGCCTCAACGATGCTAAGTGTATGCGTTATCTCTTGACCAATAAATTCCGTTTTCCAGAAGATTCTATCCTCATGCTTACAGATAGATTCTTACCATATTTTGTAAGTCTTCTAAAAAAAAGAATGTGCACTAATAAGATAGGTAATAGGTTGAAATATAGAAACATACATTTTTTTAAACATATTTGTGGACCTATGGATTGA

Coding sequence (CDS)

ATGTTCTATTCTCACGCGCCGCCGCCGATGCTGGTGAACTGCTCCGGCTGCCGGACTCCTCTCCAGCTGCCGCCGGGTGCTCCGTCGATTCGGTGCGCCATATGCAAGGCGGTGACGCAGGTCATGGACCCGCGGTCCGTCCATGCGCCGTCGCCGGCTCCGTCGCCGTACAACCACGCGCCGCCGGGAGCCCCCGCTCATCCTCACGGCCGTAAAAGGGCTGTGATTGTTGGGATATCTTACAGGTACTCGAGACATGAGCTCAAGGGCTGCCTCAACGATGCTAAGTGTATGCGTTATCTCTTGACCAATAAATTCCGTTTTCCAGAAGATTCTATCCTCATGCTTACAGATAGATTCTTACCATATTTTGTAAGTCTTCTAAAAAAAAGAATGTGCACTAATAAGATAGGTAATAGGTTGAAATATAGAAACATACATTTTTTTAAACATATTTGTGGACCTATGGATTGA

Protein sequence

MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSVHAPSPAPSPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDSILMLTDRFLPYFVSLLKKRMCTNKIGNRLKYRNIHFFKHICGPMD

Homology

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BLAST of Sed0000013 vs. NCBI nr
Match: XP_022980333.1 (metacaspase-1 [Cucurbita maxima] >XP_023528372.1 metacaspase-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.6 bits (571), Expect = 6.2e-55
Identity = 109/124 (87.90%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSV------HAPSPAP 60
           M+Y H PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPR+V      HAP PAP
Sbjct: 1   MYYPH-PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRAVPSPSPSHAPPPAP 60

Query: 61  SPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDSIL 119
           SPYNHAPPG PAHPHGRKRAVI GISYRYSRHELKGCLNDAKCMRYLL NKFRFPEDSIL
Sbjct: 61  SPYNHAPPGPPAHPHGRKRAVICGISYRYSRHELKGCLNDAKCMRYLLVNKFRFPEDSIL 120

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BLAST of Sed0000013 vs. NCBI nr
Match: XP_022924660.1 (metacaspase-1 [Cucurbita moschata] >KAG6582507.1 Metacaspase-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.0 bits (567), Expect = 1.8e-54
Identity = 108/124 (87.10%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSV------HAPSPAP 60
           M+Y H PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPR+       HAP PAP
Sbjct: 1   MYYPH-PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRAAPSPSPSHAPPPAP 60

Query: 61  SPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDSIL 119
           SPYNHAPPG PAHPHGRKRAVI GISYRYSRHELKGCLNDAKCMRYLL NKFRFPEDSIL
Sbjct: 61  SPYNHAPPGPPAHPHGRKRAVICGISYRYSRHELKGCLNDAKCMRYLLVNKFRFPEDSIL 120

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BLAST of Sed0000013 vs. NCBI nr
Match: XP_004133968.2 (metacaspase-1 [Cucumis sativus] >KAE8650291.1 hypothetical protein Csa_009465 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 1.8e-54
Identity = 109/128 (85.16%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSV----------HAP 60
           M+YSH PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPR+V           AP
Sbjct: 1   MYYSH-PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRAVPPPSPSQAASPAP 60

Query: 61  SPAPSPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPE 119
           +PAPSPYNHAPPGAPAHPHGRKRAVI G+SYRYSRHELKGCLNDAKCMRYLL NKFRFPE
Sbjct: 61  APAPSPYNHAPPGAPAHPHGRKRAVICGVSYRYSRHELKGCLNDAKCMRYLLINKFRFPE 120

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BLAST of Sed0000013 vs. NCBI nr
Match: XP_008438286.1 (PREDICTED: metacaspase-1 [Cucumis melo] >KAA0049117.1 metacaspase-1-like [Cucumis melo var. makuwa] >TYK17447.1 metacaspase-1 [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 4.4e-53
Identity = 107/128 (83.59%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSVHAPS--------- 60
           M+YSH PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVT VMDPR+V  PS         
Sbjct: 1   MYYSH-PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTHVMDPRAVPPPSPSQAPPPAS 60

Query: 61  -PAPSPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPE 119
            PAPSPYNHAPPG PAHPHGRKRAVI G+SYRYSRHELKGCLNDAKCMRYLL NKFRFPE
Sbjct: 61  APAPSPYNHAPPGPPAHPHGRKRAVICGVSYRYSRHELKGCLNDAKCMRYLLINKFRFPE 120

[Close]

BLAST of Sed0000013 vs. NCBI nr
Match: XP_038881686.1 (metacaspase-1 [Benincasa hispida])

HSP 1 Score: 215.7 bits (548), Expect = 2.9e-52
Identity = 105/126 (83.33%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSVHAPSPA------- 60
           M+YSH PPPMLVNCSGCRTPLQLPPGAPSIRCAIC+ VTQVMDPR+V  PSP+       
Sbjct: 1   MYYSH-PPPMLVNCSGCRTPLQLPPGAPSIRCAICRTVTQVMDPRAVPPPSPSHTTPPAP 60

Query: 61  -PSPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDS 119
            PSPYNHAPPG PAHPHGRKRAVI GISYRYSRHELKGCLNDAKCMRYLL NKF FPEDS
Sbjct: 61  VPSPYNHAPPGPPAHPHGRKRAVICGISYRYSRHELKGCLNDAKCMRYLLINKFHFPEDS 120

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BLAST of Sed0000013 vs. ExPASy Swiss-Prot
Match: Q7XJE6 (Metacaspase-1 OS=Arabidopsis thaliana OX=3702 GN=AMC1 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.2e-42
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 8   PPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSVHAP----SPAPSPYNHAPPG 67
           PPMLVNCSGCRTPLQLP GA SIRCA+C+AVT + DPR+   P    +P+P P  HAPPG
Sbjct: 12  PPMLVNCSGCRTPLQLPSGARSIRCALCQAVTHIADPRTAPPPQPSSAPSPPPQIHAPPG 71

Query: 68  APAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDSILMLTD 119
              HPHGRKRAVI GISYR+SRHELKGC+NDAKCMR+LL NKF+F  DSILMLT+
Sbjct: 72  QLPHPHGRKRAVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDSILMLTE 126

[Close]

BLAST of Sed0000013 vs. ExPASy Swiss-Prot
Match: Q7XJE5 (Metacaspase-2 OS=Arabidopsis thaliana OX=3702 GN=AMC2 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-27
Identity = 70/160 (43.75%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 10  MLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVM-DPR----------------------- 69
           +LV+CS CRTPL LPPGA  IRCAIC A T +  +PR                       
Sbjct: 3   LLVDCSSCRTPLHLPPGATRIRCAICHAFTLIAPEPRLQSHASASPFPFPNSSPAPSTFI 62

Query: 70  -----------SVHAPS----------------PAPSPYNHAPPGAPAHPHGRKRAVIVG 119
                      + HAPS                PA SP+NHAPPG P   HG+KRAVIVG
Sbjct: 63  YPPPTPSPYTHAPHAPSPFNHAPPDSYPFTHAPPASSPFNHAPPGPPPPVHGQKRAVIVG 122

[Close]

BLAST of Sed0000013 vs. ExPASy Swiss-Prot
Match: Q9FMG1 (Metacaspase-3 OS=Arabidopsis thaliana OX=3702 GN=AMC3 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-08
Identity = 42/126 (33.33%), Postives = 61/126 (48.41%), Query Frame = 0


Query: 17  CRTPLQLPPGAPSIRCAICKAVTQVMD--------PRSVHAPSP---APSPYNH------ 76
           C   + + P A +++C+ C  VTQ+           R +H          P +H      
Sbjct: 11  CGRRMWVQPDARTVQCSTCHTVTQLYSLVDIARGANRIIHGFQQLLRQHQPQHHEQQQQQ 70

Query: 77  ---APPGAPAH----PHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDS 119
               PP         P G+KRAV+ G++Y+   + LKGC++DAK MR LL  +  FP DS
Sbjct: 71  MMAQPPPRLLEPLPSPFGKKRAVLCGVNYKGKSYSLKGCISDAKSMRSLLVQQMGFPIDS 130

[Close]

BLAST of Sed0000013 vs. ExPASy Swiss-Prot
Match: A7F075 (Metacaspase-1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=casA PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.1e-05
Identity = 37/124 (29.84%), Postives = 59/124 (47.58%), Query Frame = 0


Query: 3   YSHAPPPMLVNCSGCRTPLQLPPGAPSI-RCAICKAVTQVMDPRSVHAPSPAPSPYNHAP 62
           YS  PP      +G      +PP AP   R  +    +      + +AP P P   +   
Sbjct: 68  YSQPPPQQYGGYNG------VPPNAPQYGRPGMPSVNSNAYINGNQNAPPPPPQGMHSFG 127

Query: 63  PGAP-------AHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDSIL 119
            GAP       ++  GR++A+++GI+Y   R +L+GC+ND K M   L   F +  D ++
Sbjct: 128 QGAPQNYAFQYSNCTGRRKALLIGINYFGQRGQLRGCINDVKNMSSYLHENFGYQRDDMV 185

[Close]

BLAST of Sed0000013 vs. ExPASy Swiss-Prot
Match: A6R7B8 (Metacaspase-1 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=339724 GN=MCA1 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 30/98 (30.61%), Postives = 46/98 (46.94%), Query Frame = 0


Query: 49  APSPAPSPYNHAPPG----------APAHP------------------HGRKRAVIVGIS 108
           A SP P+ YNH PPG           P  P                   G+++A+++GI+
Sbjct: 12  AHSPYPNSYNHGPPGHSAGHNVPPPPPTQPVQFGHGAPQGYSFQYSNCTGKRKALLIGIN 71

Query: 109 YRYSRHELKGCLNDAKCMRYLLTNKFRFPEDSILMLTD 119
           Y   R +L+GC+ND K M   L   F +  + +++LTD
Sbjct: 72  YFGQRGQLRGCINDVKNMSTYLNQNFGYAREDMVILTD 109

[Close]

BLAST of Sed0000013 vs. ExPASy TrEMBL
Match: A0A6J1IZ01 (metacaspase-1 OS=Cucurbita maxima OX=3661 GN=LOC111479732 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.0e-55
Identity = 109/124 (87.90%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSV------HAPSPAP 60
           M+Y H PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPR+V      HAP PAP
Sbjct: 1   MYYPH-PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRAVPSPSPSHAPPPAP 60

Query: 61  SPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDSIL 119
           SPYNHAPPG PAHPHGRKRAVI GISYRYSRHELKGCLNDAKCMRYLL NKFRFPEDSIL
Sbjct: 61  SPYNHAPPGPPAHPHGRKRAVICGISYRYSRHELKGCLNDAKCMRYLLVNKFRFPEDSIL 120

[Close]

BLAST of Sed0000013 vs. ExPASy TrEMBL
Match: A0A0A0L401 (zf-LSD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129470 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.7e-55
Identity = 109/128 (85.16%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSV----------HAP 60
           M+YSH PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPR+V           AP
Sbjct: 1   MYYSH-PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRAVPPPSPSQAASPAP 60

Query: 61  SPAPSPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPE 119
           +PAPSPYNHAPPGAPAHPHGRKRAVI G+SYRYSRHELKGCLNDAKCMRYLL NKFRFPE
Sbjct: 61  APAPSPYNHAPPGAPAHPHGRKRAVICGVSYRYSRHELKGCLNDAKCMRYLLINKFRFPE 120

[Close]

BLAST of Sed0000013 vs. ExPASy TrEMBL
Match: A0A6J1EFN1 (metacaspase-1 OS=Cucurbita moschata OX=3662 GN=LOC111432096 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.7e-55
Identity = 108/124 (87.10%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSV------HAPSPAP 60
           M+Y H PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPR+       HAP PAP
Sbjct: 1   MYYPH-PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRAAPSPSPSHAPPPAP 60

Query: 61  SPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDSIL 119
           SPYNHAPPG PAHPHGRKRAVI GISYRYSRHELKGCLNDAKCMRYLL NKFRFPEDSIL
Sbjct: 61  SPYNHAPPGPPAHPHGRKRAVICGISYRYSRHELKGCLNDAKCMRYLLVNKFRFPEDSIL 120

[Close]

BLAST of Sed0000013 vs. ExPASy TrEMBL
Match: A0A5D3D0F3 (Metacaspase-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003110 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.1e-53
Identity = 107/128 (83.59%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSVHAPS--------- 60
           M+YSH PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVT VMDPR+V  PS         
Sbjct: 1   MYYSH-PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTHVMDPRAVPPPSPSQAPPPAS 60

Query: 61  -PAPSPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPE 119
            PAPSPYNHAPPG PAHPHGRKRAVI G+SYRYSRHELKGCLNDAKCMRYLL NKFRFPE
Sbjct: 61  APAPSPYNHAPPGPPAHPHGRKRAVICGVSYRYSRHELKGCLNDAKCMRYLLINKFRFPE 120

[Close]

BLAST of Sed0000013 vs. ExPASy TrEMBL
Match: A0A1S3AWN8 (metacaspase-1 OS=Cucumis melo OX=3656 GN=LOC103483445 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.1e-53
Identity = 107/128 (83.59%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MFYSHAPPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSVHAPS--------- 60
           M+YSH PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVT VMDPR+V  PS         
Sbjct: 1   MYYSH-PPPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTHVMDPRAVPPPSPSQAPPPAS 60

Query: 61  -PAPSPYNHAPPGAPAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPE 119
            PAPSPYNHAPPG PAHPHGRKRAVI G+SYRYSRHELKGCLNDAKCMRYLL NKFRFPE
Sbjct: 61  APAPSPYNHAPPGPPAHPHGRKRAVICGVSYRYSRHELKGCLNDAKCMRYLLINKFRFPE 120

[Close]

BLAST of Sed0000013 vs. TAIR 10
Match: AT1G02170.1 (metacaspase 1 )

HSP 1 Score: 171.8 bits (434), Expect = 4.4e-43
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 8   PPMLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVMDPRSVHAP----SPAPSPYNHAPPG 67
           PPMLVNCSGCRTPLQLP GA SIRCA+C+AVT + DPR+   P    +P+P P  HAPPG
Sbjct: 12  PPMLVNCSGCRTPLQLPSGARSIRCALCQAVTHIADPRTAPPPQPSSAPSPPPQIHAPPG 71

Query: 68  APAHPHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDSILMLTD 119
              HPHGRKRAVI GISYR+SRHELKGC+NDAKCMR+LL NKF+F  DSILMLT+
Sbjct: 72  QLPHPHGRKRAVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDSILMLTE 126

[Close]

BLAST of Sed0000013 vs. TAIR 10
Match: AT4G25110.1 (metacaspase 2 )

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 70/160 (43.75%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 10  MLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVM-DPR----------------------- 69
           +LV+CS CRTPL LPPGA  IRCAIC A T +  +PR                       
Sbjct: 3   LLVDCSSCRTPLHLPPGATRIRCAICHAFTLIAPEPRLQSHASASPFPFPNSSPAPSTFI 62

Query: 70  -----------SVHAPS----------------PAPSPYNHAPPGAPAHPHGRKRAVIVG 119
                      + HAPS                PA SP+NHAPPG P   HG+KRAVIVG
Sbjct: 63  YPPPTPSPYTHAPHAPSPFNHAPPDSYPFTHAPPASSPFNHAPPGPPPPVHGQKRAVIVG 122

[Close]

BLAST of Sed0000013 vs. TAIR 10
Match: AT4G25110.2 (metacaspase 2 )

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 71/164 (43.29%), Postives = 89/164 (54.27%), Query Frame = 0


Query: 10  MLVNCSGCRTPLQLPPGAPSIRCAICKAVTQVM-DPR----------------------- 69
           +LV+CS CRTPL LPPGA  IRCAIC A T +  +PR                       
Sbjct: 3   LLVDCSSCRTPLHLPPGATRIRCAICHAFTLIAPEPRLQSHASASPFPFPNSSPAPSTFI 62

Query: 70  -----------SVHAPS----------------PAPSPYNHAPPGAPAHPHGRKRAVIVG 123
                      + HAPS                PA SP+NHAPPG P   HG+KRAVIVG
Sbjct: 63  YPPPTPSPYTHAPHAPSPFNHAPPDSYPFTHAPPASSPFNHAPPGPPPPVHGQKRAVIVG 122

[Close]

BLAST of Sed0000013 vs. TAIR 10
Match: AT5G64240.1 (metacaspase 3 )

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-09
Identity = 42/126 (33.33%), Postives = 61/126 (48.41%), Query Frame = 0


Query: 17  CRTPLQLPPGAPSIRCAICKAVTQVMD--------PRSVHAPSP---APSPYNH------ 76
           C   + + P A +++C+ C  VTQ+           R +H          P +H      
Sbjct: 11  CGRRMWVQPDARTVQCSTCHTVTQLYSLVDIARGANRIIHGFQQLLRQHQPQHHEQQQQQ 70

Query: 77  ---APPGAPAH----PHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDS 119
               PP         P G+KRAV+ G++Y+   + LKGC++DAK MR LL  +  FP DS
Sbjct: 71  MMAQPPPRLLEPLPSPFGKKRAVLCGVNYKGKSYSLKGCISDAKSMRSLLVQQMGFPIDS 130

[Close]

BLAST of Sed0000013 vs. TAIR 10
Match: AT5G64240.2 (metacaspase 3 )

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-09
Identity = 42/126 (33.33%), Postives = 61/126 (48.41%), Query Frame = 0


Query: 17  CRTPLQLPPGAPSIRCAICKAVTQVMD--------PRSVHAPSP---APSPYNH------ 76
           C   + + P A +++C+ C  VTQ+           R +H          P +H      
Sbjct: 11  CGRRMWVQPDARTVQCSTCHTVTQLYSLVDIARGANRIIHGFQQLLRQHQPQHHEQQQQQ 70

Query: 77  ---APPGAPAH----PHGRKRAVIVGISYRYSRHELKGCLNDAKCMRYLLTNKFRFPEDS 119
               PP         P G+KRAV+ G++Y+   + LKGC++DAK MR LL  +  FP DS
Sbjct: 71  MMAQPPPRLLEPLPSPFGKKRAVLCGVNYKGKSYSLKGCISDAKSMRSLLVQQMGFPIDS 130

The following BLAST results are available for this feature:

BLAST of Sed0000013 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022980333.1	6.2e-55	87.90	metacaspase-1 [Cucurbita maxima] >XP_023528372.1 metacaspase-1 [Cucurbita pepo s...	[more]
XP_022924660.1	1.8e-54	87.10	metacaspase-1 [Cucurbita moschata] >KAG6582507.1 Metacaspase-1, partial [Cucurbi...	[more]
XP_004133968.2	1.8e-54	85.16	metacaspase-1 [Cucumis sativus] >KAE8650291.1 hypothetical protein Csa_009465 [C...	[more]
XP_008438286.1	4.4e-53	83.59	PREDICTED: metacaspase-1 [Cucumis melo] >KAA0049117.1 metacaspase-1-like [Cucumi...	[more]
XP_038881686.1	2.9e-52	83.33	metacaspase-1 [Benincasa hispida]	[more]

BLAST of Sed0000013 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJE6	6.2e-42	72.17	Metacaspase-1 OS=Arabidopsis thaliana OX=3702 GN=AMC1 PE=1 SV=1	[more]
Q7XJE5	1.9e-27	43.75	Metacaspase-2 OS=Arabidopsis thaliana OX=3702 GN=AMC2 PE=1 SV=1	[more]
Q9FMG1	4.5e-08	33.33	Metacaspase-3 OS=Arabidopsis thaliana OX=3702 GN=AMC3 PE=2 SV=1	[more]
A7F075	2.1e-05	29.84	Metacaspase-1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=6...	[more]
A6R7B8	2.7e-05	30.61	Metacaspase-1 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=339724 GN=MCA1 P...	[more]

BLAST of Sed0000013 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IZ01	3.0e-55	87.90	metacaspase-1 OS=Cucurbita maxima OX=3661 GN=LOC111479732 PE=4 SV=1	[more]
A0A0A0L401	8.7e-55	85.16	zf-LSD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129470 PE=...	[more]
A0A6J1EFN1	8.7e-55	87.10	metacaspase-1 OS=Cucurbita moschata OX=3662 GN=LOC111432096 PE=4 SV=1	[more]
A0A5D3D0F3	2.1e-53	83.59	Metacaspase-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003110...	[more]
A0A1S3AWN8	2.1e-53	83.59	metacaspase-1 OS=Cucumis melo OX=3656 GN=LOC103483445 PE=4 SV=1	[more]

BLAST of Sed0000013 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02170.1	4.4e-43	72.17	metacaspase 1	[more]
AT4G25110.1	1.4e-28	43.75	metacaspase 2	[more]
AT4G25110.2	1.4e-28	43.29	metacaspase 2	[more]
AT5G64240.1	3.2e-09	33.33	metacaspase 3	[more]
AT5G64240.2	3.2e-09	33.33	metacaspase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 11..41 e-value: 2.0E-16 score: 57.3
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 14..38 e-value: 4.2E-12 score: 45.7
None	No IPR available	GENE3D	3.40.50.12660		coord: 28..122 e-value: 2.5E-16 score: 61.9
None	No IPR available	PFAM	PF00656	Peptidase_C14	coord: 72..128 e-value: 7.6E-12 score: 45.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..69
None	No IPR available	PANTHER	PTHR48104	METACASPASE-4	coord: 10..118
IPR033180	Metacaspase type I, plant	PANTHER	PTHR48104:SF32	METACASPASE-1-LIKE	coord: 10..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000013.1	Sed0000013.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043068	positive regulation of programmed cell death
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004197	cysteine-type endopeptidase activity