Pay0022738 (gene) Melon (Payzawat) v1

Overview


Name	Pay0022738
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty1-copia retrotransposon protein
Location	chr04: 6995051 .. 6996300 (+)
RNA-Seq Expression	Pay0022738
Synteny	Pay0022738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAAGACTTCCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACCACAGATCTCCCGACATCTGACCCCCCAACTACCACGTCAACATCCTCTGATCCAGAATCATCTACGGGACCTCTTACAGCTGTTGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAGACCGTTCGAGGACACCTGTTAAACCATATGTCTGATCCGATGTTTGATCTCTTCGTAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTGGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAGTCGTGGAACAAATTCATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAATTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAGGCTCCCAGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTCAGTTAATGCTAACTTAGTCGAATCATCCTTTGTGAACAGAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACCACTGGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAGTGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTGGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTGCTGATGGAGAATGCATGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTTTAAGTAATGTTCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTAGGAGTCTGTTGAATCGGGCCGGGCTTAA

mRNA sequence

ATGTCGATCAAGACTTCCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACCACAGATCTCCCGACATCTGACCCCCCAACTACCACGTCAACATCCTCTGATCCAGAATCATCTACGGGACCTCTTACAGCTGTTGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAGACCGTTCGAGGACACCTGTTAAACCATATGTCTGATCCGATGTTTGATCTCTTCGTAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTGGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAGTCGTGGAACAAATTCATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACCACTGGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAGTGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTGGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTGCTGATGGAGAATGCATGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGAGTCTGTTGAATCGGGCCGGGCTTAA

Coding sequence (CDS)

ATGTCGATCAAGACTTCCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACCACAGATCTCCCGACATCTGACCCCCCAACTACCACGTCAACATCCTCTGATCCAGAATCATCTACGGGACCTCTTACAGCTGTTGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAGACCGTTCGAGGACACCTGTTAAACCATATGTCTGATCCGATGTTTGATCTCTTCGTAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTGGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAGTCGTGGAACAAATTCATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACCACTGGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAGTGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTGGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTGCTGATGGAGAATGCATGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGAGTCTGTTGAATCGGGCCGGGCTTAA

Protein sequence

MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECMFMGNSATAGVIGKGKESVESGRA

Homology

[Close]

BLAST of Pay0022738 vs. ExPASy TrEMBL
Match: A0A1S3BE75 (uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=4 SV=1)

HSP 1 Score: 629.8 bits (1623), Expect = 6.3e-177
Identity = 317/329 (96.35%), Postives = 321/329 (97.57%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVT+QVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 MFMGNSATAGVIGKGK-----ESVESGRA 325
           +FMGNSATAGVIGKGK     ESVESGRA
Sbjct: 301 VFMGNSATAGVIGKGKEPGVWESVESGRA 329

[Close]

BLAST of Pay0022738 vs. ExPASy TrEMBL
Match: A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 1.0e-174
Identity = 309/316 (97.78%), Postives = 313/316 (99.05%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVT+QVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 MFMGNSATAGVIGKGK 317
           +FMGNSATAGVIGKGK
Sbjct: 301 VFMGNSATAGVIGKGK 316

[Close]

BLAST of Pay0022738 vs. ExPASy TrEMBL
Match: A0A5D3CNJ2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold356G00110 PE=4 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 5.2e-171
Identity = 322/392 (82.14%), Postives = 324/392 (82.65%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPL+GTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLNGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 325
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0022738 vs. ExPASy TrEMBL
Match: A0A5D3DL36 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00280 PE=4 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 5.2e-171
Identity = 322/392 (82.14%), Postives = 323/392 (82.40%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQM DDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 325
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0022738 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 4.9e-169
Identity = 314/379 (82.85%), Postives = 316/379 (83.38%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 317
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0022738 vs. NCBI nr
Match: XP_008445782.1 (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])

HSP 1 Score: 629.8 bits (1623), Expect = 1.3e-176
Identity = 317/329 (96.35%), Postives = 321/329 (97.57%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVT+QVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 MFMGNSATAGVIGKGK-----ESVESGRA 325
           +FMGNSATAGVIGKGK     ESVESGRA
Sbjct: 301 VFMGNSATAGVIGKGKEPGVWESVESGRA 329

[Close]

BLAST of Pay0022738 vs. NCBI nr
Match: TYK11299.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 622.5 bits (1604), Expect = 2.1e-174
Identity = 309/316 (97.78%), Postives = 313/316 (99.05%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVT+QVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 MFMGNSATAGVIGKGK 317
           +FMGNSATAGVIGKGK
Sbjct: 301 VFMGNSATAGVIGKGK 316

[Close]

BLAST of Pay0022738 vs. NCBI nr
Match: TYK11996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 610.1 bits (1572), Expect = 1.1e-170
Identity = 322/392 (82.14%), Postives = 324/392 (82.65%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPL+GTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLNGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 325
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0022738 vs. NCBI nr
Match: TYK24060.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 610.1 bits (1572), Expect = 1.1e-170
Identity = 322/392 (82.14%), Postives = 323/392 (82.40%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQM DDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 325
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0022738 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 603.6 bits (1555), Expect = 1.0e-168
Identity = 314/379 (82.85%), Postives = 316/379 (83.38%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 317
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0022738 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 6.1e-15
Identity = 44/173 (25.43%), Postives = 93/173 (53.76%), Query Frame = 0


Query: 15  KLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVA 74
           K+   DG +Y  W+ ++ +F +QL++ YVL      S+P  +  +S  PE++   +T   
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVL------SEPCPSIGSSQGPETNPREITRAD 253

Query: 75  VTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ-KSAKDIWSTLESRYGGD 134
            T           +K+ +D+     HL+N +SD ++  +  + K AK++W  L+  Y  D
Sbjct: 254 ATG----------KKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCD 313

Query: 135 DAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL 187
           ++  K+  V K+++F+M +++P++EQ+  +  +  +++S GM + E    + +
Sbjct: 314 ESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTI 350

The following BLAST results are available for this feature:

BLAST of Pay0022738 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0022738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BE75	6.3e-177	96.35	uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=...	[more]
A0A5D3CM58	1.0e-174	97.78	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CNJ2	5.2e-171	82.14	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DL36	5.2e-171	82.14	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BZI1	4.9e-169	82.85	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Pay0022738 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445782.1	1.3e-176	96.35	PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]	[more]
TYK11299.1	2.1e-174	97.78	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK11996.1	1.1e-170	82.14	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK24060.1	1.1e-170	82.14	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	1.0e-168	82.85	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0022738 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	6.1e-15	25.43	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 218..234 e-value: 0.0059 score: 25.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 219..234 score: 9.504374
None	No IPR available	GENE3D	4.10.60.10		coord: 174..251 e-value: 2.6E-5 score: 26.2
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 92..183 e-value: 7.3E-10 score: 38.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..209
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 17..316
None	No IPR available	PANTHER	PTHR47592:SF5	OS08G0421300 PROTEIN	coord: 17..316
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 202..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0022738.1	Pay0022738.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding