Pay0022707 (gene) Melon (Payzawat) v1

Overview


Name	Pay0022707
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	30S ribosomal protein S16
Location	chr02: 2243759 .. 2246281 (-)
RNA-Seq Expression	Pay0022707
Synteny	Pay0022707

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTGGAGGCGCCAGTTTCTGTTCTGTAATCTATCGTCATTTCAGTTTGGCGAATTTTCAAGATTTTTGTAGGGTTTTACGAGCTCGAAAATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCCTTACCAGGTTAGTTGGTTAATTACTCATTGCTAACTTGCGTATTGGAATTTAGATTCTTGATTTGAATGTTTCTTTTCTGTCTTTCCTTGATTTGAGTAATTTTTTTTTTTGTTTGTAGGTCAGGATGGTGGTAAACGAATGGGTATTAATTTTGAGAGAGTGAAGTAAGTGATTGTTTTTGACTTATTTATACTTTAATTCATTCTAAAATATGCACTGGGTTGCAATTGTAAATGCTTGATTATTTGTTAGTCAGAATAGACTACTCCATTGTCCGTGCTTTTCAATCGTCTTTTACTTGGTTTTTTTGAAATTTTCGATTTGTCTCCATGTTGCTTAGAGTGTTATTAAGAAAATGACTAACTTATTTTCATTTAGTTTTGGTTATGGGACACAAACCAGCCCTTAAATATAGATATTCTGGTATATTAGTAAATGAATGGTTCCCAGATTTTCTTCCAGACGATATTCATTTTTATTTCTCATTAAAATGAATGGCGTCTTCTGTCTTCCTTTGGAAATCGTAGCCCATAACCAATGGGGAGACTAATAACAGACCTACTTTCATGATATTATACCTCTACCTTGTAGATCTCGTCTTATTGACCATACCTGACACCTCTAGTCCGTCAAAGTCACTGAATGAGTATGTTGTGAATTCCTAAAACAGACTATACGTCATATTCACGATTGTTTGGTTTGTTCATTCTGTACCAATACAAATCATGGAACCCACCCTGAATAATCCCACCTTTTGCGTGATCAAATCCATCATCAAAATTGGAGGGATCACTAATATTTGACTTTCTGGCGCATGAACAAAGCATTTAACTTATCTTGCTGTCAATGTACTTATTGTAGTTAGTCTAATATGTTGACAATACAAACTAGCTGAAACTGTAAGGCCTGGTGGTGAAGCAACGTGCTATAGAAACAAGAGGTCCTAATTCCAATTTTATGCTATATTTCTTTGTATGCCATTTCGTACTAACAGTTCACATCTTGCACCTGATGAATCAAAGAATGGAAAACGGTTTGGATGGTTGAGAAGTGATCGTATTTTCTTAATATCATAAGCTTTTAACTGTAGTAGCTGGCTATCAAGTTGATGGAGAGGATGAGGGAATCCTTACTTTTTGGAGCATCTAGTCAATTGATGAAGTGATTAGGCTGCTCCTTGGGAATTTAAAGTCTTCTGTTTTTAGTTCAAGTTCTGATTAATGATTTGTAGACATCTCAGAGGACAAAAAATTTAAGATGAAATTGTTGTCTTTGAAGACCATTCTTTTTGTATGATCTCATGCAATGTATAAAAGTAAATCATCAGGCATAAGTTTTTAGCATTCAGAGTTTCGTCTCTGAGTTCTTTGTGGCTTAGAACCTATCAGTTCTAAATTCCCCCAATCCCTTGATTGCTCTAAATTCTCATAAGCCCTCCTTTTCTTTTTCTGTTCTTTTATTTGATCCTATATTTCAAAAAGAGTTGCTATTAGCTGAGACTGGATAATTTAGATTATTTTGCTGCATCAGCTGTGATGTTTTACTATGGTAGTATTCATCTAACTCATGGGCACAATAACCTCGTCTTTCATACTAATCATTCACTCATCACCGTTTCCCATCCATCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCATGCAGCGTATTCTTTTTCGAGCAGGGTTACTTCCACCACCCCCAATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGTGGGCGCTTCGTCACTCCAGAGAAGAAGCCAACTGATAGTTCCAATGGTGAAGTTGGTGATGCCGATTCATAGTTTTCTTTCAGAAGAATCTCGGGCTCTGGAATTATCATTCAAATGTGATTTCCAACTCATCCTGTTGTTCAGGTAAAATAGTTCAATAAATCGGTCCATTTACTTTTGATTACAAGATGCAGTTTTTGATGGGGAATTAGAAAAAGCAAAGTAGTTTCAGTTTATTCTGGAACATTAAAATGGAGTCTGTAGATATTATCAACGTCCAATCCTCCAGTACCAAGGCATAGTAGGGTTGTTGGACTGAGCTTATCTCACCGAAGACTAGCCATTACGTTGAGAAAACATGACCTTGTTGTCTAATTTAAACATGATTAGATCTCTGTTTTGTTCTTTCTTTGTTATGTTATTTTGATTAAAATGAGAGAAATATTCATTTTGCTTTTCTAGTAGCCAGATTCTGAAAACACCATCCTTTATCACTTTTTACTCATTTGATATTTATGTATACTGATTTGCTG

mRNA sequence

GAAGTGGAGGCGCCAGTTTCTGTTCTGTAATCTATCGTCATTTCAGTTTGGCGAATTTTCAAGATTTTTGTAGGGTTTTACGAGCTCGAAAATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCCTTACCAGGTCAGGATGGTGGTAAACGAATGGGTATTAATTTTGAGAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCATGCAGCGTATTCTTTTTCGAGCAGGGTTACTTCCACCACCCCCAATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGTGGGCGCTTCGTCACTCCAGAGAAGAAGCCAACTGATAGTTCCAATGGTGAAGTTGGTGATGCCGATTCATAGTTTTCTTTCAGAAGAATCTCGGGCTCTGGAATTATCATTCAAATGTGATTTCCAACTCATCCTGTTGTTCAGGTAAAATAGTTCAATAAATCGGTCCATTTACTTTTGATTACAAGATGCAGTTTTTGATGGGGAATTAGAAAAAGCAAAGTAGTTTCAGTTTATTCTGGAACATTAAAATGGAGTCTGTAGATATTATCAACGTCCAATCCTCCAGTACCAAGGCATAGTAGGGTTGTTGGACTGAGCTTATCTCACCGAAGACTAGCCATTACGTTGAGAAAACATGACCTTGTTGTCTAATTTAAACATGATTAGATCTCTGTTTTGTTCTTTCTTTGTTATGTTATTTTGATTAAAATGAGAGAAATATTCATTTTGCTTTTCTAGTAGCCAGATTCTGAAAACACCATCCTTTATCACTTTTTACTCATTTGATATTTATGTATACTGATTTGCTG

Coding sequence (CDS)

ATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCCTTACCAGGTCAGGATGGTGGTAAACGAATGGGTATTAATTTTGAGAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCATGCAGCGTATTCTTTTTCGAGCAGGGTTACTTCCACCACCCCCAATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGTGGGCGCTTCGTCACTCCAGAGAAGAAGCCAACTGATAGTTCCAATGGTGAAGTTGGTGATGCCGATTCATAG

Protein sequence

MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDSSNGEVGDADS

Homology

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BLAST of Pay0022707 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 7.4e-57
Identity = 99/130 (76.15%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLE+LGY+NPLPGQDGGKRMG+ F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QR+LFR+GLLPPPPMVAMGRKGG RDTRPVDP++GR+V  E K  ++
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 SNGEVGDADS 131
           ++ +  + D+
Sbjct: 121 NDNQPKEEDT 130

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BLAST of Pay0022707 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-32
Identity = 60/112 (53.57%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ + F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT-RPVDPLSGRFV 112
           YWLSVGAQP+D ++ +LFRAGL+PP PMV +G K G + T + V P++G  +
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

[Close]

BLAST of Pay0022707 vs. ExPASy Swiss-Prot
Match: Q16AN8 (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=rpsP PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-20
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQ 60

Query: 61 YWLSVGAQPSDPMQRILFRAGL 83
          YWL  GAQP+D + R+L  AGL
Sbjct: 61 YWLGQGAQPTDRVARMLEAAGL 82

[Close]

BLAST of Pay0022707 vs. ExPASy Swiss-Prot
Match: A4WNX7 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) OX=349102 GN=rpsP PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-19
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
          M ++IRL+R G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N ERV+
Sbjct: 1  MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQ 60

Query: 61 YWLSVGAQPSDPMQRILFRAGL 83
          YWLS GAQP+D + R L  AGL
Sbjct: 61 YWLSQGAQPTDRVARFLEAAGL 82

[Close]

BLAST of Pay0022707 vs. ExPASy Swiss-Prot
Match: Q5LNF2 (30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rpsP PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-19
Identity = 44/83 (53.01%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query: 61 YWLSVGAQPSDPMQRILFRAGLL 84
          YWLS GAQ +D + R+L  AG++
Sbjct: 61 YWLSQGAQTTDRVARMLEAAGVV 83

[Close]

BLAST of Pay0022707 vs. ExPASy TrEMBL
Match: A0A5D3CDW9 (30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001970 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.3e-69
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGEVGDADS 131
           SNGEVGDADS
Sbjct: 121 SNGEVGDADS 130

[Close]

BLAST of Pay0022707 vs. ExPASy TrEMBL
Match: A0A1S3BQ70 (30S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.3e-69
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGEVGDADS 131
           SNGEVGDADS
Sbjct: 121 SNGEVGDADS 130

[Close]

BLAST of Pay0022707 vs. ExPASy TrEMBL
Match: A0A0A0LZG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G589640 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QRILFR+GLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTP KKPTD 
Sbjct: 61  YWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPAKKPTDG 120

Query: 121 SNGE 125
           SNGE
Sbjct: 121 SNGE 124

[Close]

BLAST of Pay0022707 vs. ExPASy TrEMBL
Match: A0A6J1HXD7 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467724 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.0e-61
Identity = 115/130 (88.46%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRF TP+K   DS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 SNGEVGDADS 131
           ++ + GDADS
Sbjct: 121 NSSKDGDADS 130

[Close]

BLAST of Pay0022707 vs. ExPASy TrEMBL
Match: A0A6J1D251 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016603 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 116/130 (89.23%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRFVTPE KPTD 
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPE-KPTDD 120

Query: 121 SNGEVGDADS 131
           S+ + G+ADS
Sbjct: 121 SSSKDGNADS 129

[Close]

BLAST of Pay0022707 vs. NCBI nr
Match: XP_008450874.1 (PREDICTED: 30S ribosomal protein S16 [Cucumis melo] >KAA0055812.1 30S ribosomal protein S16 [Cucumis melo var. makuwa] >TYK10063.1 30S ribosomal protein S16 [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 2.8e-69
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGEVGDADS 131
           SNGEVGDADS
Sbjct: 121 SNGEVGDADS 130

[Close]

BLAST of Pay0022707 vs. NCBI nr
Match: XP_011659994.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucumis sativus] >KGN66257.1 hypothetical protein Csa_007181 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QRILFR+GLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTP KKPTD 
Sbjct: 61  YWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPAKKPTDG 120

Query: 121 SNGE 125
           SNGE
Sbjct: 121 SNGE 124

[Close]

BLAST of Pay0022707 vs. NCBI nr
Match: XP_038880699.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 249.2 bits (635), Expect = 1.9e-62
Identity = 120/130 (92.31%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDTR VDPLSGRFVTPE KPTDS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRLVDPLSGRFVTPE-KPTDS 120

Query: 121 SNGEVGDADS 131
           S+G+ GDADS
Sbjct: 121 SSGKDGDADS 129

[Close]

BLAST of Pay0022707 vs. NCBI nr
Match: XP_022968515.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 115/130 (88.46%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRF TP+K   DS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 SNGEVGDADS 131
           ++ + GDADS
Sbjct: 121 NSSKDGDADS 130

[Close]

BLAST of Pay0022707 vs. NCBI nr
Match: XP_022147743.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 245.0 bits (624), Expect = 3.6e-61
Identity = 116/130 (89.23%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRFVTPE KPTD 
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPE-KPTDD 120

Query: 121 SNGEVGDADS 131
           S+ + G+ADS
Sbjct: 121 SSSKDGNADS 129

[Close]

BLAST of Pay0022707 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 221.1 bits (562), Expect = 5.2e-58
Identity = 99/130 (76.15%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLE+LGY+NPLPGQDGGKRMG+ F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QR+LFR+GLLPPPPMVAMGRKGG RDTRPVDP++GR+V  E K  ++
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 SNGEVGDADS 131
           ++ +  + D+
Sbjct: 121 NDNQPKEEDT 130

[Close]

BLAST of Pay0022707 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-33
Identity = 60/112 (53.57%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ + F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT-RPVDPLSGRFV 112
           YWLSVGAQP+D ++ +LFRAGL+PP PMV +G K G + T + V P++G  +
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

[Close]

BLAST of Pay0022707 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 27/81 (33.33%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 2  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKY 61
          +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       +N   +  
Sbjct: 1  MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ-----TFLNLSAILD 60

Query: 62 WLSVGAQPSDPMQRILFRAGL 83
          +L  GAQP+     I  +AG+
Sbjct: 61 FLKKGAQPTRTAHDISKKAGI 76

The following BLAST results are available for this feature:

BLAST of Pay0022707 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTS6	7.4e-57	76.15	30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana...	[more]
O65686	2.2e-32	53.57	30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
Q16AN8	7.2e-20	54.88	30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh ...	[more]
A4WNX7	2.7e-19	54.88	30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2....	[more]
Q5LNF2	2.7e-19	53.01	30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /...	[more]

BLAST of Pay0022707 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDW9	1.3e-69	100.00	30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BQ70	1.3e-69	100.00	30S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1	[more]
A0A0A0LZG2	3.8e-64	95.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G589640 PE=3 SV=1	[more]
A0A6J1HXD7	1.0e-61	88.46	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1D251	1.8e-61	89.23	30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia ...	[more]

BLAST of Pay0022707 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450874.1	2.8e-69	100.00	PREDICTED: 30S ribosomal protein S16 [Cucumis melo] >KAA0055812.1 30S ribosomal ...	[more]
XP_011659994.1	7.8e-64	95.97	30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucumis sativus] >KGN6...	[more]
XP_038880699.1	1.9e-62	92.31	30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa h...	[more]
XP_022968515.1	2.1e-61	88.46	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima]	[more]
XP_022147743.1	3.6e-61	89.23	30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]	[more]

BLAST of Pay0022707 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56940.1	5.2e-58	76.15	Ribosomal protein S16 family protein	[more]
AT4G34620.1	1.5e-33	53.57	small subunit ribosomal protein 16	[more]
ATCG00050.1	1.4e-07	33.33	ribosomal protein S16	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000307	Ribosomal protein S16	TIGRFAM	TIGR00002	TIGR00002	coord: 3..82 e-value: 1.3E-30 score: 103.2
IPR000307	Ribosomal protein S16	PFAM	PF00886	Ribosomal_S16	coord: 9..70 e-value: 3.6E-26 score: 91.0
IPR000307	Ribosomal protein S16	PANTHER	PTHR12919	30S RIBOSOMAL PROTEIN S16	coord: 1..111
IPR000307	Ribosomal protein S16	HAMAP	MF_00385	Ribosomal_S16	coord: 2..80 score: 23.278223
IPR023803	Ribosomal protein S16 domain superfamily	GENE3D	3.30.1320.10		coord: 1..119 e-value: 2.6E-45 score: 155.4
IPR023803	Ribosomal protein S16 domain superfamily	SUPERFAMILY	54565	Ribosomal protein S16	coord: 3..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..130
None	No IPR available	PANTHER	PTHR12919:SF30	30S RIBOSOMAL PROTEIN S16-LIKE	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0022707.1	Pay0022707.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003735	structural constituent of ribosome