Pay0022594 (gene) Melon (Payzawat) v1

Overview


Name	Pay0022594
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon gag protein
Location	chr04: 23057216 .. 23058393 (+)
RNA-Seq Expression	Pay0022594
Synteny	Pay0022594

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAATATGACTGCTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCAAATGACAAATGTCCCGAGGTGATCGAGGATGTAAACATTGTTCAAAGATATGATCCCACGGTAATACATACAATTTGGGGTGGAGAGACAACCCAAACTTAAGACGGGGGAATGACAACCAAAAGCATACACAAGCACCATCCACCTCTTCAAACCAAGGTACGAATCTTGAAGATATTATCAAAGCTTTGGCAACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATAACTCAACTTACTACCGCAATAAGCAAGATGGAAGGGAAAGGCAAACTTCTGGCTCAACAGGACCATGCTAATGTAAGTGCCATTTCACTAAGGAGTGGTAAGATTCTTAACACTCCCACCACCAAAGAGAAAAAGGTAACTTCCGAACCCTTACCTCTTAATAGTAAGAATGAGTCCAAGGAAGAAAAGGTTGAAACAAACCCCTCACCATCTAATTCTAAAAATGAAAAATCTCCTCTTAATGATTTTACTCCTTACATACCTAAACCTCCTTTTCCCTCTAGGTTGACTCCAAAAAAAAAGGAAACACCCAAGGAGGAAGAACTCTTGGAGATGATTAGAAAGGTGCAAATCAACTTGCCTCTTCTCGATGCAATCCAACAAGTCCCGAGGTGTGCAAAGTTTCTAAAGGAGTTGTGTACCAACAAGAGGAAAACAAAAGAAAGACCAATGGTAAGTCAAAATGTTTCGGCTCTTCTTAAGAGTAATATTCTGGAAAAATACAATAACCCTGGTATGTTTTCTCTACCTTGTGTAATAGGAAATAGGTTAATTTCTCGTGCAATGCTTGACTTAGGAGCATCCATAAATGTCATGCCATACAATGTCTTTAAAGATCTAGAACTCAATAATTTGCAAAAAACTAGTGTATGCATACAACTAGCGGATAGATCTTTTATTTCACCATTAGGAATAGTTGAAGATGTCCTTGTGAAAATTGACGAACTAATTTTTCCGACGGATTTTTACATATTAGAAATAAATGAAGCATGCCTAAAACCATCTTACTCTATTTTATTAGGAAGACCTTTTGTTAGAATTAGTACTTTTGGAAAAAATAAAATATAA

mRNA sequence

ATGTTAAATATGACTGCTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCAAATGACAAATGTCCCGAGGTGATCGAGGATGTAAACATTGTTCAAAGATATGATCCCACGCATACACAAGCACCATCCACCTCTTCAAACCAAGGTACGAATCTTGAAGATATTATCAAAGCTTTGGCAACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATAACTCAACTTACTACCGCAATAAGCAAGATGGAAGGGAAAGGCAAACTTCTGGCTCAACAGGACCATGCTAATGTAAGTGCCATTTCACTAAGGAGTGGTAAGATTCTTAACACTCCCACCACCAAAGAGAAAAAGGTAACTTCCGAACCCTTACCTCTTAATAGTAAGAATGAGTCCAAGGAAGAAAAGGTTGAAACAAACCCCTCACCATCTAATTCTAAAAATGAAAAATCTCCTCTTAATGATTTTACTCCTTACATACCTAAACCTCCTTTTCCCTCTAGGTTGACTCCAAAAAAAAAGGAAACACCCAAGGAGGAAGAACTCTTGGAGATGATTAGAAAGGTGCAAATCAACTTGCCTCTTCTCGATGCAATCCAACAAGTCCCGAGGTGTGCAAAGTTTCTAAAGGAGTTGTGTACCAACAAGAGGAAAACAAAAGAAAGACCAATGGTAAGAAATAGGTTAATTTCTCGTGCAATGCTTGACTTAGGAGCATCCATAAATGTCATGCCATACAATGTCTTTAAAGATCTAGAACTCAATAATTTGCAAAAAACTAGTGTATGCATACAACTAGCGGATAGATCTTTTATTTCACCATTAGGAATAGTTGAAGATGTCCTTGTGAAAATTGACGAACTAATTTTTCCGACGGATTTTTACATATTAGAAATAAATGAAGCATGCCTAAAACCATCTTACTCTATTTTATTAGGAAGACCTTTTGTTAGAATTAGTACTTTTGGAAAAAATAAAATATAA

Coding sequence (CDS)

ATGTTAAATATGACTGCTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCAAATGACAAATGTCCCGAGGTGATCGAGGATGTAAACATTGTTCAAAGATATGATCCCACGCATACACAAGCACCATCCACCTCTTCAAACCAAGGTACGAATCTTGAAGATATTATCAAAGCTTTGGCAACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATAACTCAACTTACTACCGCAATAAGCAAGATGGAAGGGAAAGGCAAACTTCTGGCTCAACAGGACCATGCTAATGTAAGTGCCATTTCACTAAGGAGTGGTAAGATTCTTAACACTCCCACCACCAAAGAGAAAAAGGTAACTTCCGAACCCTTACCTCTTAATAGTAAGAATGAGTCCAAGGAAGAAAAGGTTGAAACAAACCCCTCACCATCTAATTCTAAAAATGAAAAATCTCCTCTTAATGATTTTACTCCTTACATACCTAAACCTCCTTTTCCCTCTAGGTTGACTCCAAAAAAAAAGGAAACACCCAAGGAGGAAGAACTCTTGGAGATGATTAGAAAGGTGCAAATCAACTTGCCTCTTCTCGATGCAATCCAACAAGTCCCGAGGTGTGCAAAGTTTCTAAAGGAGTTGTGTACCAACAAGAGGAAAACAAAAGAAAGACCAATGGTAAGAAATAGGTTAATTTCTCGTGCAATGCTTGACTTAGGAGCATCCATAAATGTCATGCCATACAATGTCTTTAAAGATCTAGAACTCAATAATTTGCAAAAAACTAGTGTATGCATACAACTAGCGGATAGATCTTTTATTTCACCATTAGGAATAGTTGAAGATGTCCTTGTGAAAATTGACGAACTAATTTTTCCGACGGATTTTTACATATTAGAAATAAATGAAGCATGCCTAAAACCATCTTACTCTATTTTATTAGGAAGACCTTTTGTTAGAATTAGTACTTTTGGAAAAAATAAAATATAA

Protein sequence

MLNMTALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDPTHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISKMEGKGKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSPSNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQVPRCAKFLKELCTNKRKTKERPMVRNRLISRAMLDLGASINVMPYNVFKDLELNNLQKTSVCIQLADRSFISPLGIVEDVLVKIDELIFPTDFYILEINEACLKPSYSILLGRPFVRISTFGKNKI

Homology

[Close]

BLAST of Pay0022594 vs. ExPASy TrEMBL
Match: A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.9e-118
Identity = 245/321 (76.32%), Postives = 253/321 (78.82%), Query Frame = 0


Query: 4   MTALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP------------- 63
           MT LLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQ+YDP             
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 64  ---------THTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISKMEGK 123
                     HTQAP TSSNQGTNLEDIIKALATNTLSFQQEMKQQ+TQLTT ISKM+GK
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120

Query: 124 GKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSPSNS 183
           GKLLAQ DHANVS ISLRS KIL+TPTTKEKKVTS+PLPLNSKNESKEEK ETNPSPSNS
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180

Query: 184 KNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQVPRCA 243
           KN+KSPLNDFTPYIPKPPFPSRL  KKKETP+EEELLEM RKVQINL LLDAIQQVPR A
Sbjct: 181 KNDKSPLNDFTPYIPKPPFPSRLALKKKETPEEEELLEMFRKVQINLSLLDAIQQVPRYA 240

Query: 244 KFLKELCTNKRKTKERPMVR----------------------------NRLISRAMLDLG 275
           KF KELCTNKRKTKER MV                             NRLIS AMLDLG
Sbjct: 241 KFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNGPGMFSLPCVIGNRLISHAMLDLG 300

[Close]

BLAST of Pay0022594 vs. ExPASy TrEMBL
Match: A0A5A7V668 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6213G00110 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.7e-108
Identity = 233/353 (66.01%), Postives = 259/353 (73.37%), Query Frame = 0


Query: 1   MLNMTALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP---------- 60
           MLNMT LLTSFV GTPLKVTKCGVCGLVGH NDKCPEVIEDVNIV+RYDP          
Sbjct: 134 MLNMTTLLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWR 193

Query: 61  ------------THTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISKM 120
                        HT APSTSS QGTNLEDIIKALATNTLSFQQEMKQQ+TQLTT  SKM
Sbjct: 194 DNPNLRWGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKM 253

Query: 121 EGKGKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSP 180
           +GKGKL AQ  HANVS ISLRSGKIL+TPT+KEKKVTS+PLPLNSKNESKEEKVETNPSP
Sbjct: 254 DGKGKLSAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSP 313

Query: 181 SNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQVP 240
           SNSKN+KSPLNDFTPYIPKPPFPSRLTPK+KETPKEEELLEM RKVQINLPLLDAIQQVP
Sbjct: 314 SNSKNDKSPLNDFTPYIPKPPFPSRLTPKEKETPKEEELLEMFRKVQINLPLLDAIQQVP 373

Query: 241 RCAKFLKELCTNKRKTKERPMVRNRLISRAMLDLGASIN------------VMPYNVFKD 300
             AKFLKELCTNKRKTKERPMV   + +    ++    N            ++ +N+F+ 
Sbjct: 374 WYAKFLKELCTNKRKTKERPMVTQNVSALLKSNIPEKCNDPGSLGVEFDGDIVTFNIFES 433

Query: 301 LELNNLQKTSVCIQLADRSFISPLGI----VEDVLVKIDELIFPTDFYILEIN 316
           +  ++   +    +L D   +  L I     E  +V+  EL+ P   Y LE N
Sbjct: 434 MRYSDECLSLCSSELHDE--VDELSIHDEFFEQEIVENRELLEPNVHYALEKN 484

[Close]

BLAST of Pay0022594 vs. ExPASy TrEMBL
Match: A0A5D3CQR9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00090 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.7e-108
Identity = 233/353 (66.01%), Postives = 259/353 (73.37%), Query Frame = 0


Query: 1   MLNMTALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP---------- 60
           MLNMT LLTSFV GTPLKVTKCGVCGLVGH NDKCPEVIEDVNIV+RYDP          
Sbjct: 69  MLNMTTLLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWR 128

Query: 61  ------------THTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISKM 120
                        HT APSTSS QGTNLEDIIKALATNTLSFQQEMKQQ+TQLTT  SKM
Sbjct: 129 DNPNLRWGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKM 188

Query: 121 EGKGKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSP 180
           +GKGKL AQ  HANVS ISLRSGKIL+TPT+KEKKVTS+PLPLNSKNESKEEKVETNPSP
Sbjct: 189 DGKGKLSAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSP 248

Query: 181 SNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQVP 240
           SNSKN+KSPLNDFTPYIPKPPFPSRLTPK+KETPKEEELLEM RKVQINLPLLDAIQQVP
Sbjct: 249 SNSKNDKSPLNDFTPYIPKPPFPSRLTPKEKETPKEEELLEMFRKVQINLPLLDAIQQVP 308

Query: 241 RCAKFLKELCTNKRKTKERPMVRNRLISRAMLDLGASIN------------VMPYNVFKD 300
             AKFLKELCTNKRKTKERPMV   + +    ++    N            ++ +N+F+ 
Sbjct: 309 WYAKFLKELCTNKRKTKERPMVTQNVSALLKSNIPEKCNDPGSLGVEFDGDIVTFNIFES 368

Query: 301 LELNNLQKTSVCIQLADRSFISPLGI----VEDVLVKIDELIFPTDFYILEIN 316
           +  ++   +    +L D   +  L I     E  +V+  EL+ P   Y LE N
Sbjct: 369 MRYSDECLSLCSSELHDE--VDELSIHDEFFEQEIVENRELLEPNVHYALEKN 419

[Close]

BLAST of Pay0022594 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 2.3e-108
Identity = 214/261 (81.99%), Postives = 228/261 (87.36%), Query Frame = 0


Query: 1   MLNMTALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP---------- 60
           MLNMT LLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIV++YDP          
Sbjct: 139 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWR 198

Query: 61  ------------THTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISKM 120
                        HTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQ+TQLTTAISKM
Sbjct: 199 DNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKM 258

Query: 121 EGKGKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSP 180
           +GKGKL AQ ++ANVSA+SLRSGKIL+TPTTKEKK TS+PLPLN+KNE KEEK+ETNPSP
Sbjct: 259 DGKGKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSP 318

Query: 181 SNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQVP 240
            NSKN+K PLNDFTPYIPKPPFPSRL PKKKETPK+EE+LEM RKVQINLPLLDAIQQVP
Sbjct: 319 YNSKNDKFPLNDFTPYIPKPPFPSRLAPKKKETPKKEEILEMFRKVQINLPLLDAIQQVP 378

[Close]

BLAST of Pay0022594 vs. ExPASy TrEMBL
Match: A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 1.1e-107
Identity = 222/262 (84.73%), Postives = 230/262 (87.79%), Query Frame = 0


Query: 1   MLNM-TALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP--------- 60
           MLNM T LLTSFVQGTPLKVTKCGVCGLVGH N+KCPEVIEDVNIV+RYDP         
Sbjct: 204 MLNMTTTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGW 263

Query: 61  -------------THTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISK 120
                         HTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQ+TQLTTAISK
Sbjct: 264 RDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISK 323

Query: 121 MEGKGKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPS 180
           M+GKGKL AQ DHANVSAISLRSGKIL+TPTTKEKKVTS+PLPLNSKNESKEEKVETNPS
Sbjct: 324 MDGKGKLPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPS 383

Query: 181 PSNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQV 240
           PSNSKN+KSPLNDFTPYIPKPPFPSRL PKKKETPKEEELLE  RKVQINLPLLDAIQQV
Sbjct: 384 PSNSKNDKSPLNDFTPYIPKPPFPSRLGPKKKETPKEEELLE-FRKVQINLPLLDAIQQV 443

[Close]

BLAST of Pay0022594 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 435.6 bits (1119), Expect = 3.8e-118
Identity = 245/321 (76.32%), Postives = 253/321 (78.82%), Query Frame = 0


Query: 4   MTALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP------------- 63
           MT LLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQ+YDP             
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 64  ---------THTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISKMEGK 123
                     HTQAP TSSNQGTNLEDIIKALATNTLSFQQEMKQQ+TQLTT ISKM+GK
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120

Query: 124 GKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSPSNS 183
           GKLLAQ DHANVS ISLRS KIL+TPTTKEKKVTS+PLPLNSKNESKEEK ETNPSPSNS
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180

Query: 184 KNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQVPRCA 243
           KN+KSPLNDFTPYIPKPPFPSRL  KKKETP+EEELLEM RKVQINL LLDAIQQVPR A
Sbjct: 181 KNDKSPLNDFTPYIPKPPFPSRLALKKKETPEEEELLEMFRKVQINLSLLDAIQQVPRYA 240

Query: 244 KFLKELCTNKRKTKERPMVR----------------------------NRLISRAMLDLG 275
           KF KELCTNKRKTKER MV                             NRLIS AMLDLG
Sbjct: 241 KFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNGPGMFSLPCVIGNRLISHAMLDLG 300

[Close]

BLAST of Pay0022594 vs. NCBI nr
Match: KAA0061315.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 402.5 bits (1033), Expect = 3.6e-108
Identity = 233/353 (66.01%), Postives = 259/353 (73.37%), Query Frame = 0


Query: 1   MLNMTALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP---------- 60
           MLNMT LLTSFV GTPLKVTKCGVCGLVGH NDKCPEVIEDVNIV+RYDP          
Sbjct: 134 MLNMTTLLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWR 193

Query: 61  ------------THTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISKM 120
                        HT APSTSS QGTNLEDIIKALATNTLSFQQEMKQQ+TQLTT  SKM
Sbjct: 194 DNPNLRWGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKM 253

Query: 121 EGKGKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSP 180
           +GKGKL AQ  HANVS ISLRSGKIL+TPT+KEKKVTS+PLPLNSKNESKEEKVETNPSP
Sbjct: 254 DGKGKLSAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSP 313

Query: 181 SNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQVP 240
           SNSKN+KSPLNDFTPYIPKPPFPSRLTPK+KETPKEEELLEM RKVQINLPLLDAIQQVP
Sbjct: 314 SNSKNDKSPLNDFTPYIPKPPFPSRLTPKEKETPKEEELLEMFRKVQINLPLLDAIQQVP 373

Query: 241 RCAKFLKELCTNKRKTKERPMVRNRLISRAMLDLGASIN------------VMPYNVFKD 300
             AKFLKELCTNKRKTKERPMV   + +    ++    N            ++ +N+F+ 
Sbjct: 374 WYAKFLKELCTNKRKTKERPMVTQNVSALLKSNIPEKCNDPGSLGVEFDGDIVTFNIFES 433

Query: 301 LELNNLQKTSVCIQLADRSFISPLGI----VEDVLVKIDELIFPTDFYILEIN 316
           +  ++   +    +L D   +  L I     E  +V+  EL+ P   Y LE N
Sbjct: 434 MRYSDECLSLCSSELHDE--VDELSIHDEFFEQEIVENRELLEPNVHYALEKN 484

[Close]

BLAST of Pay0022594 vs. NCBI nr
Match: TYK14267.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 402.5 bits (1033), Expect = 3.6e-108
Identity = 233/353 (66.01%), Postives = 259/353 (73.37%), Query Frame = 0


Query: 1   MLNMTALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP---------- 60
           MLNMT LLTSFV GTPLKVTKCGVCGLVGH NDKCPEVIEDVNIV+RYDP          
Sbjct: 69  MLNMTTLLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWR 128

Query: 61  ------------THTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISKM 120
                        HT APSTSS QGTNLEDIIKALATNTLSFQQEMKQQ+TQLTT  SKM
Sbjct: 129 DNPNLRWGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKM 188

Query: 121 EGKGKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSP 180
           +GKGKL AQ  HANVS ISLRSGKIL+TPT+KEKKVTS+PLPLNSKNESKEEKVETNPSP
Sbjct: 189 DGKGKLSAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSP 248

Query: 181 SNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQVP 240
           SNSKN+KSPLNDFTPYIPKPPFPSRLTPK+KETPKEEELLEM RKVQINLPLLDAIQQVP
Sbjct: 249 SNSKNDKSPLNDFTPYIPKPPFPSRLTPKEKETPKEEELLEMFRKVQINLPLLDAIQQVP 308

Query: 241 RCAKFLKELCTNKRKTKERPMVRNRLISRAMLDLGASIN------------VMPYNVFKD 300
             AKFLKELCTNKRKTKERPMV   + +    ++    N            ++ +N+F+ 
Sbjct: 309 WYAKFLKELCTNKRKTKERPMVTQNVSALLKSNIPEKCNDPGSLGVEFDGDIVTFNIFES 368

Query: 301 LELNNLQKTSVCIQLADRSFISPLGI----VEDVLVKIDELIFPTDFYILEIN 316
           +  ++   +    +L D   +  L I     E  +V+  EL+ P   Y LE N
Sbjct: 369 MRYSDECLSLCSSELHDE--VDELSIHDEFFEQEIVENRELLEPNVHYALEKN 419

[Close]

BLAST of Pay0022594 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 402.1 bits (1032), Expect = 4.7e-108
Identity = 214/261 (81.99%), Postives = 228/261 (87.36%), Query Frame = 0


Query: 1   MLNMTALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP---------- 60
           MLNMT LLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIV++YDP          
Sbjct: 139 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWR 198

Query: 61  ------------THTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISKM 120
                        HTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQ+TQLTTAISKM
Sbjct: 199 DNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKM 258

Query: 121 EGKGKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSP 180
           +GKGKL AQ ++ANVSA+SLRSGKIL+TPTTKEKK TS+PLPLN+KNE KEEK+ETNPSP
Sbjct: 259 DGKGKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSP 318

Query: 181 SNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQVP 240
            NSKN+K PLNDFTPYIPKPPFPSRL PKKKETPK+EE+LEM RKVQINLPLLDAIQQVP
Sbjct: 319 YNSKNDKFPLNDFTPYIPKPPFPSRLAPKKKETPKKEEILEMFRKVQINLPLLDAIQQVP 378

[Close]

BLAST of Pay0022594 vs. NCBI nr
Match: KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 399.8 bits (1026), Expect = 2.3e-107
Identity = 222/262 (84.73%), Postives = 230/262 (87.79%), Query Frame = 0


Query: 1   MLNM-TALLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP--------- 60
           MLNM T LLTSFVQGTPLKVTKCGVCGLVGH N+KCPEVIEDVNIV+RYDP         
Sbjct: 204 MLNMTTTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGW 263

Query: 61  -------------THTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQITQLTTAISK 120
                         HTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQ+TQLTTAISK
Sbjct: 264 RDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISK 323

Query: 121 MEGKGKLLAQQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPS 180
           M+GKGKL AQ DHANVSAISLRSGKIL+TPTTKEKKVTS+PLPLNSKNESKEEKVETNPS
Sbjct: 324 MDGKGKLPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPS 383

Query: 181 PSNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRKVQINLPLLDAIQQV 240
           PSNSKN+KSPLNDFTPYIPKPPFPSRL PKKKETPKEEELLE  RKVQINLPLLDAIQQV
Sbjct: 384 PSNSKNDKSPLNDFTPYIPKPPFPSRLGPKKKETPKEEELLE-FRKVQINLPLLDAIQQV 443

The following BLAST results are available for this feature:

BLAST of Pay0022594 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0022594 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E3R2	1.9e-118	76.32	uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=...	[more]
A0A5A7V668	1.7e-108	66.01	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CQR9	1.7e-108	66.01	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CRR8	2.3e-108	81.99	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VQ60	1.1e-107	84.73	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Pay0022594 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902871.1	3.8e-118	76.32	PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]	[more]
KAA0061315.1	3.6e-108	66.01	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK14267.1	3.6e-108	66.01	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0047407.1	4.7e-108	81.99	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
KAA0067359.1	2.3e-107	84.73	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos...	[more]

BLAST of Pay0022594 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 81..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..192
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 163..332
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 163..332
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 247..331 e-value: 1.87676E-14 score: 66.206
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 237..338 e-value: 1.2E-15 score: 59.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0022594.1	Pay0022594.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding