Pay0022036 (gene) Melon (Payzawat) v1

Overview


Name	Pay0022036
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr12: 2930576 .. 2932178 (+)
RNA-Seq Expression	Pay0022036
Synteny	Pay0022036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTGTAAGCTGGAATACTAGAGGGTTAAACTCTCCCTCCAAAAGAGTTCAAATAAAAAATCTTATTTCCCGTTATCTTCCTGACTTTGTGATTTTAGTTGAGACTAAACTGACTGATGTTACAAAAAAAATTGTTAAATCTCTGTGGAGCTCTATTAGTGTAAATTGGTGTTTTTTAAGTGCTAATGGCAATTCGGAGGGAATCATTATCATGTGGGATGATCTTAGATTCAATGTGTCTGATTTCATTGAAGGCGTTTTCTCATTATCCATAAAAATCAACATTCCTGATGGGCCTCCTTGTTCGGCCTGGTGGCTGTTGGCTATATATGGGCCTGCTGGTGGTAGAAACAGAAATTCCTTTTGGGCTGAACTTCTGGACCTCAAAAATATTTACTCTCCAAATTGGCTTTTAGCGGGAGACTTTAACGTTGTGAGATTCTCCTCTGAGACGTCCGTCCAAAATCCTAGACATTACAGTATGAGGAAATTTAACAACTTCATCTCCGAAAGCAATCTCATTGACCCGCCTCTCTCAAATGCAAAATATACCTGGTCTAACCTCAGAACCCAGCCGATTCTCTCCAGAATTGACAGATTTTTATATACAATGGGATGGGAAAATTTATTCTCTGCTCGCTATTCAAAAACCCTTTCCAGAGTTACCTCAGATCATTTCCCGATCATTCTTGAAACCTCCACGGTTAGTTGGGGTCCTCTGCCCTTCAGATTTATAAACGTGCACTTAAAGAGCCGTGGTTTAAAAACAACTTTAAAAGATGGTGGTATAATTTGAGACAGGATGGTCATCCAGGCTTTACTATCATGCAAAAGCTCAAAAAAATATCTTTCATTATAAAGGTTGAACAAAAAAAAATAACCGATATAATGAAGAAGAAAAGAGAGCTTGGGTCAAAGAATTCGACGACATTGACAGAATAGAAGCTGCAGGAAATCTGTTTGAAGAGCTTAGCCTCCGCAGAACAAAAATCAAAGCTGATATCCTCTCTTTTGACTCCAAAGAAGCTCAAATATGGCACCAAAAAAGCAAGGGGCTTTGGAACACTGATGGTGATGAAAATACTTCCTTCCTTCACAGAATATGCTCTGCTAGACAACGAAGGAGTATCATTTCAAATATTAATTTAGTTGATGGGATTCCTTGTACTACAAATGATAACATTGTCAAAGCCTTCCTAGACCATTTTGAAGACATTTACAATGGAAATGGTGAGGATAGCCCATGGCTTATCGAAAATCTCAATTGGTCCCCTATACCATTCTCCCAAGCTCAAAACTTATGCTCGATTTTCACAGAAGAGGAAATTCATTCAGCCCTTGCTGCTTTTTCAAACAATAAAAGCCCGGGTCCAGACGGCTTTACTATGGAATTCTTCAAAGCTACCTGGTATGACCTCAAGGATGATATTTGTAAAATTTTCAAGGATTTCCACATCAACTGTATCATCAATAAAGCAGTAAATATAACAAATATTGCCCTGATTGCCAAAAAAATATAAATGTGCGGTGTCAGCGGATTACAGACCTATTAGTCTAACAACTTCCATCTATAAGATCATTGCCAAAGTCATTGCTGA

mRNA sequence

ATGAAAATTGTAAGCTGGAATACTAGAGGGTTAAACTCTCCCTCCAAAAGAGTTCAAATAAAAAATCTTATTTCCCGTTATCTTCCTGACTTTGTGATTTTAGTTGAGACTAAACTGACTGATGTTACAAAAAAAATTGTTAAATCTCTGTGGAGCTCTATTAGTGTAAATTGGTGTTTTTTAAGTGCTAATGGCAATTCGGAGGGAATCATTATCATGTGGGATGATCTTAGATTCAATGTGTCTGATTTCATTGAAGGCGTTTTCTCATTATCCATAAAAATCAACATTCCTGATGGGCCTCCTTGTTCGGCCTGGTGGCTGTTGGCTATATATGGGCCTGCTGGTGGTAGAAACAGAAATTCCTTTTGGGCTGAACTTCTGGACCTCAAAAATATTTACTCTCCAAATTGGCTTTTAGCGGGAGACTTTAACGTTGTGAGATTCTCCTCTGAGACGTCCGTCCAAAATCCTAGACATTACAGTATGAGGAAATTTAACAACTTCATCTCCGAAAGCAATCTCATTGACCCGCCTCTCTCAAATGCAAAATATACCTGGTCTAACCTCAGAACCCAGCCGATTCTCTCCAGAATTGACAGATTTTTATATACAATGGGATGGGAAAATTTATTCTCTGCTCGCTATTCAAAAACCCTTTCCAGAGTTACCTCAGATCATTTCCCGATCATTCTTGAAACCTCCACGGTTAGTTGGGGTCCTCTGCCCTTCAGATTTATAAACGTGCACTTAAAGAGCCGTGGTTTAAAAACAACTTTAAAAGATGATCATTGCCAAAGTCATTGCTGA

Coding sequence (CDS)

ATGAAAATTGTAAGCTGGAATACTAGAGGGTTAAACTCTCCCTCCAAAAGAGTTCAAATAAAAAATCTTATTTCCCGTTATCTTCCTGACTTTGTGATTTTAGTTGAGACTAAACTGACTGATGTTACAAAAAAAATTGTTAAATCTCTGTGGAGCTCTATTAGTGTAAATTGGTGTTTTTTAAGTGCTAATGGCAATTCGGAGGGAATCATTATCATGTGGGATGATCTTAGATTCAATGTGTCTGATTTCATTGAAGGCGTTTTCTCATTATCCATAAAAATCAACATTCCTGATGGGCCTCCTTGTTCGGCCTGGTGGCTGTTGGCTATATATGGGCCTGCTGGTGGTAGAAACAGAAATTCCTTTTGGGCTGAACTTCTGGACCTCAAAAATATTTACTCTCCAAATTGGCTTTTAGCGGGAGACTTTAACGTTGTGAGATTCTCCTCTGAGACGTCCGTCCAAAATCCTAGACATTACAGTATGAGGAAATTTAACAACTTCATCTCCGAAAGCAATCTCATTGACCCGCCTCTCTCAAATGCAAAATATACCTGGTCTAACCTCAGAACCCAGCCGATTCTCTCCAGAATTGACAGATTTTTATATACAATGGGATGGGAAAATTTATTCTCTGCTCGCTATTCAAAAACCCTTTCCAGAGTTACCTCAGATCATTTCCCGATCATTCTTGAAACCTCCACGGTTAGTTGGGGTCCTCTGCCCTTCAGATTTATAAACGTGCACTTAAAGAGCCGTGGTTTAAAAACAACTTTAAAAGATGATCATTGCCAAAGTCATTGCTGA

Protein sequence

MKIVSWNTRGLNSPSKRVQIKNLISRYLPDFVILVETKLTDVTKKIVKSLWSSISVNWCFLSANGNSEGIIIMWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKNIYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRTQPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLKSRGLKTTLKDDHCQSHC

Homology

[Close]

BLAST of Pay0022036 vs. ExPASy TrEMBL
Match: A0A5A7VRD2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00150 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.6e-109
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 73  MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 132
           MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN
Sbjct: 1   MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 60

Query: 133 IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 192
           IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT
Sbjct: 61  IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 120

Query: 193 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 252
           QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK
Sbjct: 121 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 180

Query: 253 SRGLKTTLKD 263
           SRGLKTTLKD
Sbjct: 181 SRGLKTTLKD 190

[Close]

BLAST of Pay0022036 vs. ExPASy TrEMBL
Match: A0A5A7TMG5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00580 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.1e-92
Identity = 164/189 (86.77%), Postives = 170/189 (89.95%), Query Frame = 0


Query: 73  MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 132
           MWDDLRFNVSDFIEG FSLSIKINIPD PPCSAWWL AIYGPAGGRNRNSFWAELLDLKN
Sbjct: 1   MWDDLRFNVSDFIEGSFSLSIKINIPDEPPCSAWWLSAIYGPAGGRNRNSFWAELLDLKN 60

Query: 133 IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 192
             SP WLLAGDFNVVRFS ETS QN RHYSMRKFNNFIS+SNLIDPPLSNAKYTWSNLR 
Sbjct: 61  KCSPIWLLAGDFNVVRFSFETSAQNLRHYSMRKFNNFISDSNLIDPPLSNAKYTWSNLRA 120

Query: 193 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 252
           QPILSRIDRFLYT+GWENLF+A YSKTLSRVTSDHFPIILE+ST+SWGPLPFR INVHLK
Sbjct: 121 QPILSRIDRFLYTVGWENLFTAHYSKTLSRVTSDHFPIILESSTISWGPLPFRLINVHLK 180

Query: 253 SRGLKTTLK 262
               K   +
Sbjct: 181 ESWFKNNFR 189

[Close]

BLAST of Pay0022036 vs. ExPASy TrEMBL
Match: A0A5A7TAQ1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00050 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 8.9e-84
Identity = 149/185 (80.54%), Postives = 159/185 (85.95%), Query Frame = 0


Query: 73  MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 132
           MWDDLRFNV+DFIEG FSLSI IN PDGP  SAWWL AIYGP+GGRNR SFWAELLDLKN
Sbjct: 1   MWDDLRFNVTDFIEGTFSLSININTPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 133 IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 192
             SP WLLAGDFNVVRFSSETS QNP  +SMR FN FIS+SNLIDPPLSNAK+TWSNLR 
Sbjct: 61  KCSPTWLLAGDFNVVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 193 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 252
           QP+LSRIDRFLYT  WENLF+A YSKTLSRVTSDHFPI LE+S +SWGP PF+ INVHLK
Sbjct: 121 QPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKLINVHLK 180

Query: 253 SRGLK 258
              LK
Sbjct: 181 ESWLK 185

[Close]

BLAST of Pay0022036 vs. ExPASy TrEMBL
Match: A0A5D3DLM2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00780 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 4.9e-82
Identity = 146/185 (78.92%), Postives = 157/185 (84.86%), Query Frame = 0


Query: 73  MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 132
           MWDDLRF+V+D IEG FSLSI IN PDGP  SAWWL AIYGP+GGRNR SFWAELLDLKN
Sbjct: 1   MWDDLRFSVTDCIEGTFSLSININFPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 133 IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 192
             SP WLLAGDFN VRFSSETS QNP  +SMR FN FIS+SNLIDPPLSNAK+TWSNLR 
Sbjct: 61  KCSPTWLLAGDFNAVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 193 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 252
           QP+LSRIDRFLYT  WENLF+A YSKTLSRVTSDHFPI LE+S +SWGP PF+FINVHLK
Sbjct: 121 QPVLSRIDRFLYTANWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKFINVHLK 180

Query: 253 SRGLK 258
               K
Sbjct: 181 EPWFK 185

[Close]

BLAST of Pay0022036 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 8.4e-82
Identity = 145/188 (77.13%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 73  MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 132
           MWDDLRFNV+DFIEG FSLSI IN PDGP  SAWWL AIYGP+GGRNR SFWAELLDLKN
Sbjct: 1   MWDDLRFNVTDFIEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 133 IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 192
             SP WLLAGDFNVVRF SETS QNP  +SMR FN FI++SNLIDPPLSNAK+TWSNLR 
Sbjct: 61  KCSPTWLLAGDFNVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRV 120

Query: 193 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 252
            P+LSRIDRFLYT  WENLF+A YSKTLSRVTSDHFPI+LE+S +SWGP PF+ INVHLK
Sbjct: 121 HPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLK 180

Query: 253 SRGLKTTL 261
               K  +
Sbjct: 181 EPWFKNNI 188

[Close]

BLAST of Pay0022036 vs. NCBI nr
Match: KAA0067709.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 404.4 bits (1038), Expect = 7.4e-109
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 73  MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 132
           MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN
Sbjct: 1   MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 60

Query: 133 IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 192
           IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT
Sbjct: 61  IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 120

Query: 193 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 252
           QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK
Sbjct: 121 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 180

Query: 253 SRGLKTTLKD 263
           SRGLKTTLKD
Sbjct: 181 SRGLKTTLKD 190

[Close]

BLAST of Pay0022036 vs. NCBI nr
Match: KAA0044334.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 349.7 bits (896), Expect = 2.2e-92
Identity = 164/189 (86.77%), Postives = 170/189 (89.95%), Query Frame = 0


Query: 73  MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 132
           MWDDLRFNVSDFIEG FSLSIKINIPD PPCSAWWL AIYGPAGGRNRNSFWAELLDLKN
Sbjct: 1   MWDDLRFNVSDFIEGSFSLSIKINIPDEPPCSAWWLSAIYGPAGGRNRNSFWAELLDLKN 60

Query: 133 IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 192
             SP WLLAGDFNVVRFS ETS QN RHYSMRKFNNFIS+SNLIDPPLSNAKYTWSNLR 
Sbjct: 61  KCSPIWLLAGDFNVVRFSFETSAQNLRHYSMRKFNNFISDSNLIDPPLSNAKYTWSNLRA 120

Query: 193 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 252
           QPILSRIDRFLYT+GWENLF+A YSKTLSRVTSDHFPIILE+ST+SWGPLPFR INVHLK
Sbjct: 121 QPILSRIDRFLYTVGWENLFTAHYSKTLSRVTSDHFPIILESSTISWGPLPFRLINVHLK 180

Query: 253 SRGLKTTLK 262
               K   +
Sbjct: 181 ESWFKNNFR 189

[Close]

BLAST of Pay0022036 vs. NCBI nr
Match: KAA0040038.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.8e-83
Identity = 149/185 (80.54%), Postives = 159/185 (85.95%), Query Frame = 0


Query: 73  MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 132
           MWDDLRFNV+DFIEG FSLSI IN PDGP  SAWWL AIYGP+GGRNR SFWAELLDLKN
Sbjct: 1   MWDDLRFNVTDFIEGTFSLSININTPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 133 IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 192
             SP WLLAGDFNVVRFSSETS QNP  +SMR FN FIS+SNLIDPPLSNAK+TWSNLR 
Sbjct: 61  KCSPTWLLAGDFNVVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 193 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 252
           QP+LSRIDRFLYT  WENLF+A YSKTLSRVTSDHFPI LE+S +SWGP PF+ INVHLK
Sbjct: 121 QPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKLINVHLK 180

Query: 253 SRGLK 258
              LK
Sbjct: 181 ESWLK 185

[Close]

BLAST of Pay0022036 vs. NCBI nr
Match: TYK24536.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 314.3 bits (804), Expect = 1.0e-81
Identity = 146/185 (78.92%), Postives = 157/185 (84.86%), Query Frame = 0


Query: 73  MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 132
           MWDDLRF+V+D IEG FSLSI IN PDGP  SAWWL AIYGP+GGRNR SFWAELLDLKN
Sbjct: 1   MWDDLRFSVTDCIEGTFSLSININFPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 133 IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 192
             SP WLLAGDFN VRFSSETS QNP  +SMR FN FIS+SNLIDPPLSNAK+TWSNLR 
Sbjct: 61  KCSPTWLLAGDFNAVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 193 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 252
           QP+LSRIDRFLYT  WENLF+A YSKTLSRVTSDHFPI LE+S +SWGP PF+FINVHLK
Sbjct: 121 QPVLSRIDRFLYTANWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKFINVHLK 180

Query: 253 SRGLK 258
               K
Sbjct: 181 EPWFK 185

[Close]

BLAST of Pay0022036 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.7e-81
Identity = 145/188 (77.13%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 73  MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 132
           MWDDLRFNV+DFIEG FSLSI IN PDGP  SAWWL AIYGP+GGRNR SFWAELLDLKN
Sbjct: 1   MWDDLRFNVTDFIEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 133 IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 192
             SP WLLAGDFNVVRF SETS QNP  +SMR FN FI++SNLIDPPLSNAK+TWSNLR 
Sbjct: 61  KCSPTWLLAGDFNVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRV 120

Query: 193 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 252
            P+LSRIDRFLYT  WENLF+A YSKTLSRVTSDHFPI+LE+S +SWGP PF+ INVHLK
Sbjct: 121 HPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLK 180

Query: 253 SRGLKTTL 261
               K  +
Sbjct: 181 EPWFKNNI 188

[Close]

BLAST of Pay0022036 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-05
Identity = 30/105 (28.57%), Postives = 50/105 (47.62%), Query Frame = 0


Query: 139 LLAGDFNVVRFSSETSVQNPRHYS----------MRKFNNFISESNLIDPPLSNAKYTWS 198
           +L GDF+ +  +S+       HYS          + +F N + +S+L+D P     YTWS
Sbjct: 222 ILVGDFDQIAATSD-------HYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWS 281

Query: 199 NLR-TQPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIIL 233
           N +   PI+ ++DR +    W + F +  +       SDH P I+
Sbjct: 282 NHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGVSDHSPCII 319

The following BLAST results are available for this feature:

BLAST of Pay0022036 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0022036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VRD2	3.6e-109	100.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TMG5	1.1e-92	86.77	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TAQ1	8.9e-84	80.54	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DLM2	4.9e-82	78.92	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C4J1	8.4e-82	77.13	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Pay0022036 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067709.1	7.4e-109	100.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044334.1	2.2e-92	86.77	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0040038.1	1.8e-83	80.54	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK24536.1	1.0e-81	78.92	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK06777.1	1.7e-81	77.13	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0022036 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	1.6e-05	28.57	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	PFAM	PF03372	Exo_endo_phos	coord: 4..227 e-value: 1.3E-5 score: 25.0
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..234 e-value: 2.7E-38 score: 134.1
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 1..233
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 93..258
None	No IPR available	PANTHER	PTHR33710:SF32	SUBFAMILY NOT NAMED	coord: 93..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0022036.1	Pay0022036.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003824	catalytic activity