Pay0021887 (gene) Melon (Payzawat) v1

Overview
NamePay0021887
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionTranscription factor UPBEAT1-like
Locationchr09: 1952365 .. 1952790 (-)
RNA-Seq ExpressionPay0021887
SyntenyPay0021887
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCAAATTGGCTCTCACAATGAGCTCTAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCGAAGAAGAAGAACCAAACGATCTCTAACCCATTCCCGTCGTCGCTTCCACCGCCGTCACAATGCAGGCTGCCGGCCGGGGGATTCGACTCTCGGCTGCTCCGAAGTCTCCACCAAATTGGAAGCTCTGCAGAGCCTCATCCCGCCGCAATCCGCCGCTGGACACGGCCAACCACGGCAAGCGGATGAGTTGTTCAAGGACACCGCCGACTACATTGTTGTTTTGAAAACCCAAGTCGTTATCTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCAGTGACTACCCCACGACGCCCTGGTTCATAGTTTAAACGGTCGCCAGTTGTATTCAAGTTCTCTCTGATTCTTCTTCTTCTCCCTC

mRNA sequence

GACCAAATTGGCTCTCACAATGAGCTCTAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCGAAGAAGAAGAACCAAACGATCTCTAACCCATTCCCGTCGTCGCTTCCACCGCCGTCACAATGCAGGCTGCCGGCCGGGGGATTCGACTCTCGGCTGCTCCGAAGTCTCCACCAAATTGGAAGCTCTGCAGAGCCTCATCCCGCCGCAATCCGCCGCTGGACACGGCCAACCACGGCAAGCGGATGAGTTGTTCAAGGACACCGCCGACTACATTGTTGTTTTGAAAACCCAAGTCGTTATCTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCAGTGACTACCCCACGACGCCCTGGTTCATAGTTTAAACGGTCGCCAGTTGTATTCAAGTTCTCTCTGATTCTTCTTCTTCTCCCTC

Coding sequence (CDS)

ATGAGCTCTAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCGAAGAAGAAGAACCAAACGATCTCTAACCCATTCCCGTCGTCGCTTCCACCGCCGTCACAATGCAGGCTGCCGGCCGGGGGATTCGACTCTCGGCTGCTCCGAAGTCTCCACCAAATTGGAAGCTCTGCAGAGCCTCATCCCGCCGCAATCCGCCGCTGGACACGGCCAACCACGGCAAGCGGATGAGTTGTTCAAGGACACCGCCGACTACATTGTTGTTTTGAAAACCCAAGTCGTTATCTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCAGTGACTACCCCACGACGCCCTGGTTCATAGTTTAA

Protein sequence

MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSASDYPTTPWFIV
Homology
BLAST of Pay0021887 vs. ExPASy TrEMBL
Match: A0A5D3BNP5 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002510 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS 60
           MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS
Sbjct: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS 60

Query: 61  LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA-SDYP 112
           LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA SD P
Sbjct: 61  LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSP 112

BLAST of Pay0021887 vs. ExPASy TrEMBL
Match: A0A6J1JTK8 (uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.6e-14
Identity = 63/114 (55.26%), Postives = 70/114 (61.40%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCS-------EVST 60
           M+ KT TL N      R RTKRSL  S  R    H  G     S    S       +VS 
Sbjct: 1   MTPKTYTLTN-----LRTRTKRSLPDSAVRAPNPHEYGETTSSSPCSSSSDDDDDDDVSA 60

Query: 61  KLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA 108
           KLEALQSLIP QSA    + RQ ++LFK+TADYIV+LKTQVVILQKLVDFFGSA
Sbjct: 61  KLEALQSLIPAQSA----EARQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 105

BLAST of Pay0021887 vs. ExPASy TrEMBL
Match: A0A4D9BV93 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_007780 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 0

Query: 19  RTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQPRQADE 78
           R KR L++S RR  +R      P +ST   S VS KL AL+SLIP  S  G  +P   D+
Sbjct: 15  RLKRRLSNSSRRLRKRQLC---PRNSTNSDSSVSGKLAALRSLIP--SEIGDAKP---DQ 74

Query: 79  LFKDTADYIVVLKTQVVILQKLVDFFGSAS 109
           LF +TADYIV+LKTQV++LQKLVDF+GS S
Sbjct: 75  LFLETADYIVLLKTQVLVLQKLVDFYGSQS 96

BLAST of Pay0021887 vs. ExPASy TrEMBL
Match: A0A103YHA6 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_012550 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 0

Query: 9   PNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAA 68
           P  L+N+  R++ R  + S+ R  R H+       +    S VS KLEAL++LIP Q   
Sbjct: 5   PRRLKNFAPRKSLRGSSGSQHRRCRSHH----KNSTITTSSSVSDKLEALKNLIPAQEVD 64

Query: 69  GHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSAS 109
           G   P  AD+LF++TADYI++L+TQV +LQKLVDF+GS+S
Sbjct: 65  G-AAPSSADQLFQETADYILLLRTQVSVLQKLVDFYGSSS 99

BLAST of Pay0021887 vs. ExPASy TrEMBL
Match: A0A2K1X5J6 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G093000 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-10
Identity = 46/97 (47.42%), Postives = 68/97 (70.10%), Query Frame = 0

Query: 19  RTKRSLTHSRRRFHRRHNAG-CRP------GDSTLGCSEVSTKLEALQSLIPPQSAAGHG 78
           ++K SL  + RR  RR +AG C+       G  T  CS+VS KLEAL++LIP  +   +G
Sbjct: 73  KSKISLKKTARRRRRRPHAGACKAQRGIYNGGLTSSCSKVSDKLEALKNLIP--ATCHNG 132

Query: 79  QPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSAS 109
           +  + D+LFK+TADYI++L+TQVV+LQ LV+F+GS++
Sbjct: 133 EIVKPDQLFKETADYILLLRTQVVLLQGLVEFYGSST 167

BLAST of Pay0021887 vs. NCBI nr
Match: KAA0039441.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 2.4e-51
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS 60
           MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS
Sbjct: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS 60

Query: 61  LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA-SDYP 112
           LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA SD P
Sbjct: 61  LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSP 112

BLAST of Pay0021887 vs. NCBI nr
Match: KAG7016112.1 (hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 71/119 (59.66%), Postives = 79/119 (66.39%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRP------GDSTLGC------ 60
           MS KTNTL N      R  TKRSL  SRRRFHRRH +  R       G++T         
Sbjct: 1   MSPKTNTLTN-----LRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDD 60

Query: 61  SEVSTKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA 108
            +VS KLEALQSLIP QSA G    RQ ++LFK+TADYIV+LKTQVVILQKLVDFFGSA
Sbjct: 61  DDVSAKLEALQSLIPAQSAEG----RQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 110

BLAST of Pay0021887 vs. NCBI nr
Match: KAG6578552.1 (hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-19
Identity = 71/119 (59.66%), Postives = 78/119 (65.55%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRP------GDSTLGC------ 60
           MS KTNTL N      R  TKRSL  SRRRFHRRH +  R       G +T         
Sbjct: 1   MSPKTNTLTN-----LRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGQTTSSSPFSDDD 60

Query: 61  SEVSTKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA 108
            +VS KLEALQSLIP QSA G    RQ ++LFK+TADYIV+LKTQVVILQKLVDFFGSA
Sbjct: 61  DDVSAKLEALQSLIPAQSAEG----RQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 110

BLAST of Pay0021887 vs. NCBI nr
Match: XP_022993697.1 (uncharacterized protein LOC111489609 [Cucurbita maxima])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 63/114 (55.26%), Postives = 70/114 (61.40%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCS-------EVST 60
           M+ KT TL N      R RTKRSL  S  R    H  G     S    S       +VS 
Sbjct: 1   MTPKTYTLTN-----LRTRTKRSLPDSAVRAPNPHEYGETTSSSPCSSSSDDDDDDDVSA 60

Query: 61  KLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA 108
           KLEALQSLIP QSA    + RQ ++LFK+TADYIV+LKTQVVILQKLVDFFGSA
Sbjct: 61  KLEALQSLIPAQSA----EARQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 105

BLAST of Pay0021887 vs. NCBI nr
Match: XP_021912135.1 (uncharacterized protein LOC110825900 [Carica papaya])

HSP 1 Score: 84.3 bits (207), Expect = 7.5e-13
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = 0

Query: 13  RNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQ 72
           R  RRRRT+R + H+R        A CRP      CS++S KL AL++LIP Q+    G+
Sbjct: 13  RTQRRRRTRRVVAHAR--------AACRPRT----CSKLSHKLRALKNLIPAQNDVAGGE 72

Query: 73  PRQADELFKDTADYIVVLKTQVVILQKLVDFFGSASD 110
             +A++LF++TADYI++L+TQVV+LQ+L++F+GS +D
Sbjct: 73  NVRAEKLFEETADYIILLRTQVVVLQRLIEFYGSGAD 97

BLAST of Pay0021887 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 5.3e-09
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 18  RRTKRSLTHSRRRFH----RRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQP 77
           R  K   T  RRR +     R    C    S+ G   V  KL AL+SL+PP    G G  
Sbjct: 2   RTLKTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGGG-- 61

Query: 78  RQADELFKDTADYIVVLKTQVVILQKLVDFFGSASD 110
            + +ELF++TA+YIV L+TQVV+L+KL++ + ++SD
Sbjct: 62  -ETEELFQETAEYIVKLRTQVVVLKKLIEIYDNSSD 94

BLAST of Pay0021887 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 0

Query: 45  TLGCSEVSTKLEALQSLIPPQSAAGHGQPRQ------------ADELFKDTADYIVVLKT 104
           T G  + S KL+AL+SL+PP S     Q RQ             ++LF++TADYIV L+ 
Sbjct: 24  TSGGEKFSEKLQALKSLLPPPSKMTE-QSRQDAYVEEDSSVGETEQLFQETADYIVRLRG 83

Query: 105 QVVILQKLVDFFGSA 108
           QVV+LQKL++ +GS+
Sbjct: 84  QVVVLQKLIEIYGSS 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BNP51.1e-5198.21Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6J1JTK85.6e-1455.26uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609... [more]
A0A4D9BV931.3e-1054.44Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_007780 PE=4 SV=1[more]
A0A103YHA61.7e-1046.00Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_012... [more]
A0A2K1X5J62.2e-1047.42Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G093000 PE=4 ... [more]
Match NameE-valueIdentityDescription
KAA0039441.12.4e-5198.21transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcr... [more]
KAG7016112.13.1e-1959.66hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6578552.15.3e-1959.66hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022993697.11.2e-1355.26uncharacterized protein LOC111489609 [Cucurbita maxima][more]
XP_021912135.17.5e-1346.39uncharacterized protein LOC110825900 [Carica papaya][more]
Match NameE-valueIdentityDescription
AT3G29370.15.3e-0940.63unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G39240.12.0e-0844.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..36
NoneNo IPR availablePANTHERPTHR33124:SF70SUBFAMILY NOT NAMEDcoord: 18..108
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 18..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0021887.1Pay0021887.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated