Pay0021842 (gene) Melon (Payzawat) v1

Overview


Name	Pay0021842
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Unknown protein
Location	chr08: 1251414 .. 1253784 (+)
RNA-Seq Expression	Pay0021842
Synteny	Pay0021842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTCCCGCGCCGCCGGTTTGCCGATTCTTCTTTCGCAATCGCAATCGCAATGGATTCTACAGGTTATTCTCTCTCCCGTTCTTTCACCACTTTAGTTATAATCATGTGAAATCATCTGAAATGTCGTTCATTCACATATATTTGCTCCAGTTTCATAAACATTAAGATTTAGGTTTTCGTTTCGATTCCATGTCTTTTGGGTCGTCGATGTTTCTGAGTTGGATTGTAGTTTTGGTACTTATCTTTCTGTAAAAGAAACAATTTTGATTGATGGTATCAACTTGCGAGAGAAGGGAGATCTCTAAAAGAGGAGTTACTAAAGATTTTTCGAATTGGGAAGAAGCAAGCTATATGGTGAAATAAGGGGAACATTTATACTAAGTGGCAACCGTATTACCTATAGCATAGAAAAATCTATAGAGGGGATTTCTTTTATCTTGGAAGATTCTTCTATGTATTTATTCTCATAGAACCATCTCAAATCGTCATTTTTTCTTTTTTGTAGGGGTGTCCAACAAGGTTGTATGAGAGGAGGAGATTAGGGTCTTCTGGCAGGACTGCTTGTCAATTGAACGTAGAGACAACGTGGTTCCAAAAGGATCTTGCAATTGTACAAGATACCATAAGGTGACTTTGAGATTTAGATTGCCGTTTCCACATAGTTCATAGAACACCAATGTGGAGACAGAATCATATGGGCAATCTTATTTGAAGCATTCAAATGTATTAATGGCTCTGTTTGATAGCTCCCATACGAAAAGTTAACCTTTTCTTGGATAATGCCCTTTTCAAATCAAATTATAAATGGGCAAAAAAGCATTATCTTCGGGAGGGAGAGGGAGGGGGAGGGGGCAATATGATGCAACAGAGAACTGTTGGTGAAGATATCATTCGGTTCCAGCTTCCATGATATTTTGTTATGTTCTTAGCTTAGTGTAAATCCAGTGTCATAAATTTCTTATATTCTCTCATTGTACGGAGAAACTACACCGCCCTTTACAAAAAGTTGGATGTTTAACTGTGTATTTGTCTGTCAATCTTTAATTTTGAAGATAGATTAATGACTATTGGTGATTTCTACTTATTGCAAGTGTTTTATGGCCATGATAGCTTATCTAGTAATGCTAGTTCAACTTGTATTTTCATTTTGAATGAGTATAAGTTTAGGTCACATTGATGGCTTATCTAGGATTCTTACTTTTATAATTTGCTATTGTTGATTCCTTGCCCTCTAAATCATCATGGGTTGGTCTAGTGGTCAAAAAAAGAGACATAGTCTCAATAACTAACTAAGGGGTCATGGGTTCAATCTATGGTGACCACCTACCTAGGAATTAATTTCCTACCGTTAGCGCAACTCTTTTCATATTCATCCTTTTCAGCTGCAAGTTCAGCCCCAACTAGGCTGTCAAGTTGTTCATTCTATTCGCCTAAGTTAATCAATATTTATAATTGATTATACATGCTGCAGTTTTGGTTCTGTAAATTTCGTTTGCAGTGCTAGCCGCACTACATATAATTCAGTTCACTGTGATATTAGAGCTTCACGCTGAGAAGTTTGTCTCGTGAGGTTTAAAAACAGTGGTATATCAATTAGAGCTTCATGGAACCCTTTTGATTATGAGATGATCACTTGGATGAACTTTGGAAGTTGGTGGCTCTACATGTACAAACATTCTCTTGCGCTTCATGGTATTGCTATCTTGGTGTTGTAATTGTACATTATGTATTGTTATACATACTTGACTGGCCTCCTTTTCATGGACTTGTTTTTTTTAATGCCCTTTTATTCTCCATTTCTTTTTCTCAATGAAAAATTGGTTCTTTGTAATATAATATAGGTCTTATCTACATACAAACGTTGCTCTTTTTAATGTTTTCTCAATGAAAGCAGTTGCTTCAATGAAGAAAAAAACACATACTCATTGCCCTTTTATTGTTGTCAACTCATTGGTGATCGTGAAGTTGATTCCTTTAAGTTTTCTTGATCTTCTTCCTTTAGCCAAGGCTTGGAATGTTTCTTGATCTTCTTTCTTTAGCCAAGGCATGGAATGTGTGAGTGCCTGAGATTGCTGAATCTCATAAGACAGTACCTCACACAGGTCTATACACACAGGTGTTATGCTTTATTTTGTTTTAAAATTTCTCATTCATACATCTCTTTCTCGTTGTTTATCATCAAATTTTGAATGTCATAGAACATTCATGCAGTAGTATTGTTGAGAGCATTTTAGCTCTTTTCAGACTTAATGTCCAGCTATTTAGCCCGTTTGTTTGATTTTTTTCAGATACTAAGGGAATCACCGGAGCTGTTAGATTTCAGTTTGTTGTTCGGCTGTGATGAGATTGTTGTTCGGCTGATTTAA

mRNA sequence

ATGCCTTTCCCGCGCCGCCGGTTTGCCGATTCTTCTTTCGCAATCGCAATCGCAATGGATTCTACAGGTTTTCGTTTCGATTCCATGTCTTTTGGGTCGTCGATGTTTCTGAGTTGGATTGTAGTTTTGGGGTGTCCAACAAGGTTGTATGAGAGGAGGAGATTAGGGTCTTCTGGCAGGACTGCTTGTCAATTGAACGTAGAGACAACGTGGTTCCAAAAGGATCTTGCAATTGTACAAGATACCATAAGGCATGGAATGTGTGAGTGCCTGAGATTGCTGAATCTCATAAGACAGTACCTCACACAGATACTAAGGGAATCACCGGAGCTGTTAGATTTCAGTTTGTTGTTCGGCTGTGATGAGATTGTTGTTCGGCTGATTTAA

Coding sequence (CDS)

ATGCCTTTCCCGCGCCGCCGGTTTGCCGATTCTTCTTTCGCAATCGCAATCGCAATGGATTCTACAGGTTTTCGTTTCGATTCCATGTCTTTTGGGTCGTCGATGTTTCTGAGTTGGATTGTAGTTTTGGGGTGTCCAACAAGGTTGTATGAGAGGAGGAGATTAGGGTCTTCTGGCAGGACTGCTTGTCAATTGAACGTAGAGACAACGTGGTTCCAAAAGGATCTTGCAATTGTACAAGATACCATAAGGCATGGAATGTGTGAGTGCCTGAGATTGCTGAATCTCATAAGACAGTACCTCACACAGATACTAAGGGAATCACCGGAGCTGTTAGATTTCAGTTTGTTGTTCGGCTGTGATGAGATTGTTGTTCGGCTGATTTAA

Protein sequence

MPFPRRRFADSSFAIAIAMDSTGFRFDSMSFGSSMFLSWIVVLGCPTRLYERRRLGSSGRTACQLNVETTWFQKDLAIVQDTIRHGMCECLRLLNLIRQYLTQILRESPELLDFSLLFGCDEIVVRLI

Homology

[Close]

BLAST of Pay0021842 vs. ExPASy TrEMBL
Match: A0A0A0KKS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525250 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 64/143 (44.76%), Postives = 69/143 (48.25%), Query Frame = 0


Query: 49  LYERRRLGSSGRTACQLNVETTWFQKDLAIVQDT-------------------------- 108
           LYERRRLGSSGRTA QLNVETTWFQKDLA VQDT                          
Sbjct: 81  LYERRRLGSSGRTAYQLNVETTWFQKDLANVQDTKRLQVFMATIAYRLQAQPQLGCQVVN 140

Query: 109 ---------------------------------IRHGMCECLRLLN---LIRQYL-TQIL 129
                                             RHGMCECLRL++   + R  L TQ+ 
Sbjct: 141 SIHLMPAALHIIQFTVILELHDEKFVSWGLKTVARHGMCECLRLISHKTVPRTGLYTQMP 200

[Close]

BLAST of Pay0021842 vs. ExPASy TrEMBL
Match: A0A5A7UBH4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G001100 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-09
Identity = 63/151 (41.72%), Postives = 77/151 (50.99%), Query Frame = 0


Query: 1   MPFPRRRFADSSFAIAIAMDSTG------FRFD-SMSFGSSMFLS-WIVVLGCPTRLYER 60
           MPFPRRRFADSSF  AIAMDST        +F   +   +  F+S W+ +      L+  
Sbjct: 1   MPFPRRRFADSSF--AIAMDSTVLAALHIIQFTVILELHAEKFVSWWLYMYKHSLALHGI 60

Query: 61  RRLGSSGRTACQLNVETTWFQK--DLAIVQDTIRHG-------MCECLRLLNLIRQYLT- 120
             L   G     L +   W  +  ++A    T+ H        +   L L  L  Q+L  
Sbjct: 61  AILPRLGMFLDLLPLAKAWNVRVPEIAESHKTVPHTEHSRSSIVESILALFRLNVQHLAR 120

Query: 121 -----QILRESPELLDFSLLFGCDEIVVRLI 129
                QILRESPELLDFSLLFGCDEIVVRLI
Sbjct: 121 LFDFFQILRESPELLDFSLLFGCDEIVVRLI 149

[Close]

BLAST of Pay0021842 vs. NCBI nr
Match: KAA0052510.1 (hypothetical protein E6C27_scaffold120G001100 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-09
Identity = 63/151 (41.72%), Postives = 77/151 (50.99%), Query Frame = 0


Query: 1   MPFPRRRFADSSFAIAIAMDSTG------FRFD-SMSFGSSMFLS-WIVVLGCPTRLYER 60
           MPFPRRRFADSSF  AIAMDST        +F   +   +  F+S W+ +      L+  
Sbjct: 1   MPFPRRRFADSSF--AIAMDSTVLAALHIIQFTVILELHAEKFVSWWLYMYKHSLALHGI 60

Query: 61  RRLGSSGRTACQLNVETTWFQK--DLAIVQDTIRHG-------MCECLRLLNLIRQYLT- 120
             L   G     L +   W  +  ++A    T+ H        +   L L  L  Q+L  
Sbjct: 61  AILPRLGMFLDLLPLAKAWNVRVPEIAESHKTVPHTEHSRSSIVESILALFRLNVQHLAR 120

Query: 121 -----QILRESPELLDFSLLFGCDEIVVRLI 129
                QILRESPELLDFSLLFGCDEIVVRLI
Sbjct: 121 LFDFFQILRESPELLDFSLLFGCDEIVVRLI 149

The following BLAST results are available for this feature:

BLAST of Pay0021842 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0021842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKS7	2.5e-15	44.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525250 PE=4 SV=1	[more]
A0A5A7UBH4	4.5e-09	41.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Pay0021842 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052510.1	9.3e-09	41.72	hypothetical protein E6C27_scaffold120G001100 [Cucumis melo var. makuwa]	[more]

BLAST of Pay0021842 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0021842.1	Pay0021842.1	mRNA