Pay0021827 (gene) Melon (Payzawat) v1

Overview


Name	Pay0021827
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Unknown protein
Location	Contig00104_ERROPOS3026545: 129460 .. 130683 (-)
RNA-Seq Expression	Pay0021827
Synteny	Pay0021827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTAAAATCACATGCAATCGCCTTCTCCTCGTCTTGTTGTTTCTCTTGTGCTTCATTCCCCTTGCAACTCAAGGTAATTTAATGATCACAAAAATGTCTTCTTTTATTCTCTTTAATTTGCATACAAATCCTTAAATATTCTATATTTTTCCTTTTTGAGAGAGTTCAATTTCTTTTAATTTCCATTCAATTTCTTTTAATTTCCAAAGTTTTATCTTTTTAGTTTTAATTGTAATTTCTAAAATTTTAAGTTACAGTCGAGATTAAATATTACTTAATGATGACTATTGATTTTATATCAAAGCACGACGAGAAAGGAATTTTTTCATACAATATGATTCAGTATATATATATATATATATATATATATATATATATATATATATATATAAATTGTGTATAGGGACAGTTATTTGTGAAGGGGATAATTTAAGAGGGATTTGAAAGAAAAACAATATAATATATATGTATTTATAAGTTAATTAATAATGTTTTTGCATCTGTAGATGCTTAATTAAGTTATTGAACTTGCATTTATAAACTACAATTGGAGTAATTGGACGATCATTAATTTTGATTAAGATGATATGATATTATTGTTTATTTATCTTCTTAACTACTTAACAAGAAAGATGCGATTTTTTCAACCCCACAAAAAAACAATTAATGCTCAGCATCAAAGTCTTACTTTGAAATAATGTTAAGAATCTAATCGATTTATATATGTTTAGATGAGAGGTAAACACTCTGTAAGACATTAATTATCATTTTTGATATAATTTGACCCTCCAACTTTTATTATCGTCGAACTAAATTATTTCATTAATTTAATTTGTTTCTACTATATATAGGCCATCTTTTCATTGATTCATCGTCTTTTATTGTTTCTAATAAGTTTATTTTAATTCTTGCAATAAAAATTTCTATCGAACACACTTAAAATTAAAATAACAATAATAATCATAATATCATGGTGTAGGTTTTAGATTCTCAAATACTTGAACTTTATGTGATATCAGGCCTAAAACAATAATTTAGGTTATAAATTTTCTAATGTTTTTCTTTTCTCACTATTTTGCAGCTCGAAAGCTACCCAAAATGAGTTATACTAACGTTAAAAGTGAAGTGAGAGATGAGGAGTTAAGTCCTACGAATGATGATTCGGTATATCACCTTGATTACTCTCCACCCAAAAAGAACCGTCCAGTTCATAACTAA

mRNA sequence

ATGGCAGCTAAAATCACATGCAATCGCCTTCTCCTCGTCTTGTTGTTTCTCTTGTGCTTCATTCCCCTTGCAACTCAAGCTCGAAAGCTACCCAAAATGAGTTATACTAACGTTAAAAGTGAAGTGAGAGATGAGGAGTTAAGTCCTACGAATGATGATTCGGTATATCACCTTGATTACTCTCCACCCAAAAAGAACCGTCCAGTTCATAACTAA

Coding sequence (CDS)

ATGGCAGCTAAAATCACATGCAATCGCCTTCTCCTCGTCTTGTTGTTTCTCTTGTGCTTCATTCCCCTTGCAACTCAAGCTCGAAAGCTACCCAAAATGAGTTATACTAACGTTAAAAGTGAAGTGAGAGATGAGGAGTTAAGTCCTACGAATGATGATTCGGTATATCACCTTGATTACTCTCCACCCAAAAAGAACCGTCCAGTTCATAACTAA

Protein sequence

MAAKITCNRLLLVLLFLLCFIPLATQARKLPKMSYTNVKSEVRDEELSPTNDDSVYHLDYSPPKKNRPVHN

Homology

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BLAST of Pay0021827 vs. NCBI nr
Match: XP_021641792.1 (root meristem growth factor 9 [Hevea brasiliensis])

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-04
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 3  AKITCNRLLLVLLFLLCFIPLATQARKLPKMSYTNVKSEVRDEE---------LSPTNDD 62
          AK++C  LLLV  FLLCF+ +  +AR L    Y N   +++D E          +P + +
Sbjct: 2  AKVSCKNLLLVAFFLLCFVSVGARARSLRVAKYINEVEKIKDHEDNSFTSKGNGAPPDAE 61

Query: 63 SVYHLDYSPPKKNRPVHN 72
           +  +DY+ PKKN P+HN
Sbjct: 62 ELLGMDYTGPKKNPPIHN 79

The following BLAST results are available for this feature:

BLAST of Pay0021827 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0021827 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0021827 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021641792.1	8.5e-04	37.18	root meristem growth factor 9 [Hevea brasiliensis]	[more]

BLAST of Pay0021827 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0021827.1	Pay0021827.1	mRNA