Pay0021762 (gene) Melon (Payzawat) v1

Overview


Name	Pay0021762
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag-pol polyprotein
Location	chr02: 18349605 .. 18353981 (+)
RNA-Seq Expression	Pay0021762
Synteny	Pay0021762

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGAGGATGAATCAGTGTCTGATTACAATAAGAGAGTGCTTGAAATTACAAATGAACCTTTGCTGCTCGGTGAAAAAATACCTGACTCTAAAATAGTGCGGAAAGTACTTCAATCCTTGCCCAGGAAATTTGATATGAAAGTTACTGTCATTGAGGAAGCTCATGATATTACAATGCTGAAACTTGATGAATTCTTTGGTTTGTTGCTTACGTTTGAGATGGCCACTGCTAATAGAGAAAGTAAGAAAGGCAAGGGAATTGCTTTTAAATCCACACATGTAAGTGGGGAGGCTGTAAGTGACACTGAAGCTAACATGGATGAGTCAATAGCCTTATTAACAAAACATATCACAAACGCCCTTTGAAAATTAAAAAATACGAATGCCATATGTATGAATGCTCAAACTTCTAATCGGTATCGAAGAAGGAATGATGATGGCACTACCAGGAGGAACAATGAAAATTCTGATAGAAGAAGTGATGGTTATATTAAGAAAAAGGAAGGTGACAGAAGAATTTTCAGGTGTAGAGAATGTGGAGGAGTTGGTCACTATCAGGCAGAATGTCCCCCATTCCTGAGAAAACAGAAGAAAAACTTTCGTGTCACACTATCAGATGAAAACAGAAGAAAAACATAAGAGTTGGTCACTATCAGGTAGAGATGATGATGGCAACATAAAGGCCTTCACAATACAAATTATTGATGAGGACACTGATGATGAAAGTGGATGTTATGAAGAAAGCAAAAATGATAAGCTGTCAATTGAGAAGCTTGAAACTCTATGGAAAGAAGATTGTGAAGCAAGAGCTATACAAAAGGAAAGGATTCAAGATCTTATAGAAGAAAATGAACGGTTGATGTTTGTAATATCTTCTCTAAAGTTAAAATTGAGAGAGGTTCAGAATGAGAATGATCAGATTTTAAAATCTGTAAAATGCTAAACTCAGGAATGGAGAATCAATTCTAGACATAATGGCTTTCATAGATATGGTTTAGGATTTGTGGCCTCTGCAAGTAGTCTTAAAGCTACATCTGAAATCAAGTTTGTTTCTGCCTTAAAGGTAGTTGAACATGGAACGACTCATACAGAGATTGGCATCAGCACTACAGTTAAATCTCTCAGGAGAACGTGTTACTACTGTGGTCGAAAAGGTCATATCAGGTCAATTTGTTATAAGTTAAGGCGAGACCAGTTGCATCAACAGAAATACTGGAATAGGAGCCATGCACAGCCTCACATGGTCTGGAGAATTAAATCTGCTGAATGATGTAAGATTGTCTTTACATCCGTTCAGACCACAGACGATGCGTGGTATTTTGATAGTGGGTGCTCAAGACATATGACTGGAAACAGATCCTACTTTACAAACTTAAAAAACTGTGTCACCGGACATGTTACCTTTGGTGATGGTGCAAAAGAAAAAATTATAGCTAAAGGTAACATAGATAAAAATAACCTACCACGTCTAAATGATGTTAGGTATGTGGACGGACTAAAAGAAAACTTGATTAGTATAAGTCAACTATGTGATCAAGGCTACAAAGTCAGTTTGATGATATTGGCTGTGTTGTTATGAATAAAGAAAATCAGATTTGTATGAGTGGTAAACGACAGACTATAACTGTTATCACTGAAACTCAAATATGTTAGACACCTGTCAGTTGACAAGATCAGATCAAACGTGGCTATGGTATAAAAAGCTTGAGCATGTCAGTATGAGAGGCTTGGAAAAAATTATTAAAAATGAAGCAATTGTGGGAATTCCTGATTTAGATGTAAATGGAAAATTCTTTTATGGAGATTGTCAAATTGGCAAGTAGACAAGGTCTACTCATAAAAGTCTAAAAGAATGTTATACAAATAGAGTCTTGGAATTGTTACATATGGATCTCATGGGTCCGACAGAAAGTATAGGAGGAAAAAGGTATGTGCTGGTTGTAGTTGATGATTACTCAAGATATACTTGGGTTTGCTTTCTCAAAGGAAAAATAGATACTGTTGAAATACGCAAAAATCTGTGTTTGAAGCTACAACGTGAAAAAGGGAAGAAGATAACGAGGATCCGAAGTGATCATGGTAAAGAGTTTGATAATGAAGGCTTTAATAGTTTTTGTCTGTCAGAAGGAATACACCATGAATTTCCTACACCAATAACTCCTCAACAAAATGGTGTAGTACAAAGAAAGAACAAGACGTTACAAGAAATGACACGTGTTATGATACATGCCAAAAATTTACCTCTATGTTTTTTAGCAGAAGCTGTAAATACTGCCTGTCACATTCATAACAGGGTAACTATTAAAAACTGGAACGATTGTTACTCTTTATGAACTTTGGAAAAAGAGAAAGCCAAATGTTAAATACTTCCATGTGTTTGGAAGTACATGTTATATCTTAGCTGATAGGAAATACCGTAAAAAATGGGATGCAAGGTCAGAACAAGGAATCTTTCTCGGGTACTCTCAGAACAGTCGGCCTATAGAGTCTTCAATAACAAATTTGGGAGTGTTATGGAACAATCAATGTAGTTATAAATGATCTCGATTCAGCTATCAAATAGATGAATGATGAGGAAGATGAGAATTCAAACATGTCTGAAGCTAGAACTACGAGTACTGTAGAACTTTCTAAAGCTGATAACCCATCTGATGATCCAGGCAAAAGTTTGGAAAAATCATCAGAAGGAATCATCACTAAAAAATCAAAACTAATTCCATCTGCTCATGTGAAGAAAAATCATCCAACAAGCTCTATAATAGGTGTCCGTCAGCTAGGATGCAGACTAGAAGGAAAGAAAAGATTGATTACATTAAGATGGTTGCTAATTTATGTTATACTTCCACCATTGAACCTTCTACTGTTGACTCTGCTCTCAAGGATGAGTATTGGCTAAATGCTATGCAAGAGGAGCTACTCCAATTTAGACGAAACAATGTCTAAACGTTAGTTTCCAAGCCAGAAGGTGTAAATATTATTGGCACCAAATGAGTATTTAAAAATAAGACTGATGAAGCTGGATGTGTGACGAAAAATAAAGCTAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTGTTGACTTTGATGAAACGTTTGCTCCAGTTGCTTGCCTTAAAGCCATTTGATTATTACTTGGTATATTATGCATATAGAAATTTAAATTATATCAGATGGATGTAAATAGTGCTTTCTTAAATGGATATTTGAATGAAGAGGCTTATGTTGCTCAACCAAAAGGTTTTGTTGATTCCGAGCACCCGAAGCATGTGTATAAGCTCAACAAAGCTTTATATGTGGTAAAGCAAGCTCCGAGAGCTTGGTATGAACGGCTAACTGTTTACTTAAGAGGTAAAGGATATTCTAAAGGAGAAATTGACAAGACCTTGTTTATACACAGGAAATCTGATAAACTTTTGGTTGCTCAAATTTATGTTGATGACATCATTTTTGGAGGTTTTCCTCAAGATCTTGTAAATAATTTCATTAACATCATGCAATCAGAATTCGAAATGAGCATGGTTGGAGAACTTTCATGCCTTTTGGATCTTCAAATTAAGCAAAAGAATGACGACATATTCATATCTCAGGAAAAGTATGCCAAGAATATGGTTAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGAAATCTAGCTGCGACACATGTTAAACTTACAAGAGATACTGATGGTACAGAAGTTGATCACAAACTCTACAGGAGTATAGTAGGTAGCTTATTATATTTAACAGCAAGTCGATCTGACATAGCTTATGCTGTGGGAATATGTGTCCGTTATCAGGTTGATCCCCGCATCCCTCACTTAGAAGCTGTTAAACAAATTCTTAAGTATGTTCATAAGACCAGTGACTTTGGAATGATCTATTTCTATGATACCACCCCCACTCTTATTGGATATTGTGATGTTGACTGGGCAGGTTCGGTTGATGATCGTAAAAGTACGTCTGGAGGATGTTTCTTTTTAGGAAACAATCTAATTTCTTGGTTAAGTAAGAAGCATAACTATGTTTCTTTATCTACAGCTGAAACTGAATATATAGCAGCAGGTAGTGGTTGTACACAGTTGATTTGGATGAAAAATATGTTGCATGAATATGACTTTGATCAGGACCTTATGACGTTGTATTGTGACAATATGAGCGCAATTGATAAATGGAAGAATCCAGTTCAACATAGTCGAACAAAGCACATTAACATAAGACATCATTTTATTCGAGAACTTGTTGAAGATAAAGTGATTAGGCTTGATCATATTCGTTCCAACTTACAATTAACCGATATTTTCACTAAGCCTCTGGATGCAAATTCATTCGAACACTTACGTGCTGGTTTAGGAGTGTGTCGCACTTAA

mRNA sequence

ATGACCGAGGATGAATCAGTGTCTGATTACAATAAGAGAGTGCTTGAAATTACAAATGAACCTTTGCTGCTCGGTGAAAAAATACCTGACTCTAAAATAGTGCGGAAAGTACTTCAATCCTTGCCCAGGAAATTTGATATGAAAGTTACTGTCATTGAGGAAGCTCATGATATTACAATGCTGAAACTTGATGAATTCTTTGGTTTGTTGCTTACGTTTGAGATGGCCACTGCTAATAGAGAAAGTAAGAAAGGCAAGGGAATTGCTTTTAAATCCACACATGTAAGTGGGGAGGCTGTAAGTGACACTGAAGCTAACATGGATGAGAATGATGATGGCACTACCAGGAGGAACAATGAAAATTCTGATAGAAGAAGTGATGGTTATATTAAGAAAAAGGAAGGTGACAGAAGAATTTTCAGGTGTAGAGAATGTGGAGGAGTTGGTCACTATCAGGCAGAATGTCCCCCATTCCTGAGAAAACAGAAGAAAAACTTTCGTGAAAGGATTCAAGATCTTATAGAAGAAAATGAACGGTTGATGTTTGTAATATCTTCTCTAAAGTTAAAATTGAGAGAGATTGTCTTTACATCCGTTCAGACCACAGACGATGCGTGGTATTTTGATAGTGGGTGCTCAAGACATATGACTGGAAACAGATCCTACTTTACAAACTTAAAAAACTGTGTCACCGGACATGTTACCTTTGGTGATGGTGCAAAAGAAAAAATTATAGCTAAAGGTAACATAGATAAAAATAACCTACCACGTCTAAATGATTTGATTTGGATGAAAAATATGTTGCATGAATATGACTTTGATCAGGACCTTATGACGTTGTATTGTGACAATATGAGCGCAATTGATAAATGGAAGAATCCAGTTCAACATAGTCGAACAAAGCACATTAACATAAGACATCATTTTATTCGAGAACTTGTTGAAGATAAAGTGATTAGGCTTGATCATATTCGTTCCAACTTACAATTAACCGATATTTTCACTAAGCCTCTGGATGCAAATTCATTCGAACACTTACGTGCTGGTTTAGGAGTGTGTCGCACTTAA

Coding sequence (CDS)

ATGACCGAGGATGAATCAGTGTCTGATTACAATAAGAGAGTGCTTGAAATTACAAATGAACCTTTGCTGCTCGGTGAAAAAATACCTGACTCTAAAATAGTGCGGAAAGTACTTCAATCCTTGCCCAGGAAATTTGATATGAAAGTTACTGTCATTGAGGAAGCTCATGATATTACAATGCTGAAACTTGATGAATTCTTTGGTTTGTTGCTTACGTTTGAGATGGCCACTGCTAATAGAGAAAGTAAGAAAGGCAAGGGAATTGCTTTTAAATCCACACATGTAAGTGGGGAGGCTGTAAGTGACACTGAAGCTAACATGGATGAGAATGATGATGGCACTACCAGGAGGAACAATGAAAATTCTGATAGAAGAAGTGATGGTTATATTAAGAAAAAGGAAGGTGACAGAAGAATTTTCAGGTGTAGAGAATGTGGAGGAGTTGGTCACTATCAGGCAGAATGTCCCCCATTCCTGAGAAAACAGAAGAAAAACTTTCGTGAAAGGATTCAAGATCTTATAGAAGAAAATGAACGGTTGATGTTTGTAATATCTTCTCTAAAGTTAAAATTGAGAGAGATTGTCTTTACATCCGTTCAGACCACAGACGATGCGTGGTATTTTGATAGTGGGTGCTCAAGACATATGACTGGAAACAGATCCTACTTTACAAACTTAAAAAACTGTGTCACCGGACATGTTACCTTTGGTGATGGTGCAAAAGAAAAAATTATAGCTAAAGGTAACATAGATAAAAATAACCTACCACGTCTAAATGATTTGATTTGGATGAAAAATATGTTGCATGAATATGACTTTGATCAGGACCTTATGACGTTGTATTGTGACAATATGAGCGCAATTGATAAATGGAAGAATCCAGTTCAACATAGTCGAACAAAGCACATTAACATAAGACATCATTTTATTCGAGAACTTGTTGAAGATAAAGTGATTAGGCTTGATCATATTCGTTCCAACTTACAATTAACCGATATTTTCACTAAGCCTCTGGATGCAAATTCATTCGAACACTTACGTGCTGGTTTAGGAGTGTGTCGCACTTAA

Protein sequence

MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRERIQDLIEENERLMFVISSLKLKLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDLIWMKNMLHEYDFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGVCRT

Homology

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BLAST of Pay0021762 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-14
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 260  DLIWMKNMLHEYDFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVI 319
            ++IW+K  L E    Q    +YCD+ SAID  KN + H+RTKHI++R+H+IRE+V+D+ +
Sbjct: 1233 EMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESL 1292

Query: 320  RLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGV 353
            ++  I +N    D+ TK +  N FE  +  +G+
Sbjct: 1293 KVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

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BLAST of Pay0021762 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 5.2e-12
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 258  LNDLIWMKNMLHEYDFD-QDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVED 317
            + + +W+K +L   +   ++ + +Y DN   I    NP  H R KHI+I++HF RE V++
Sbjct: 1305 VREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQN 1364

Query: 318  KVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGV 353
             VI L++I +  QL DIFTKPL A  F  LR  LG+
Sbjct: 1365 NVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

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BLAST of Pay0021762 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-11
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 280  LYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLD 339
            +YCDN+ A     NPV HSR KHI I +HFIR  V+   +R+ H+ ++ QL D  TKPL 
Sbjct: 1388 IYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLS 1447

Query: 340  ANSFEHLRAGLGVCR 355
              +F++  + +GV R
Sbjct: 1448 RTAFQNFASKIGVTR 1462

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BLAST of Pay0021762 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-10
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 259  NDLIWMKNMLHEYDFD-QDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDK 318
            ++L W+ ++L E          +YCDN+ A     NPV HSR KHI + +HFIR  V+  
Sbjct: 1349 SELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSG 1408

Query: 319  VIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGVCR 355
             +R+ H+ ++ QL D  TKPL   +F++    +GV +
Sbjct: 1409 ALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIK 1445

[Close]

BLAST of Pay0021762 vs. ExPASy TrEMBL
Match: A0A5A7VMH8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002640 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 7.9e-88
Identity = 253/688 (36.77%), Postives = 282/688 (40.99%), Query Frame = 0


Query: 1   MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITM 60
           MT+DES+ DYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFDMKV  IEEAHDIT 
Sbjct: 134 MTKDESMFDYNKRVLEITNESLLLGEKIPDSKIVRKVLRSLPRKFDMKVAAIEEAHDITT 193

Query: 61  LKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNE 120
           LKLDE FG L TFEMAT +RES                 V  +      ND+G TRRNNE
Sbjct: 194 LKLDELFGSLHTFEMATTDRESMN---------------VQTSNLYRRRNDNGLTRRNNE 253

Query: 121 NSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE------------ 180
           NSDRRS GY+KKKEG+R+IFRCRECGGVGHYQAECP FLRKQKKNFR             
Sbjct: 254 NSDRRSGGYLKKKEGERKIFRCRECGGVGHYQAECPTFLRKQKKNFRVTLSDEEYVDSKD 313

Query: 181 ----------RIQDLIEENERLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSR 240
                     RI D   +++R   + S LK       R  +     T DDAWYFDSGCSR
Sbjct: 314 DDGNINAFTIRITDENTDDDRTENLDSILKAGYNGSHRYGLGFVASTADDAWYFDSGCSR 373

Query: 241 HMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL------------- 300
           HMTGNRSYFTNL +CVT HVTFGDGAK KIIAKGNID+++LPRLN++             
Sbjct: 374 HMTGNRSYFTNLNDCVTKHVTFGDGAKGKIIAKGNIDEDDLPRLNNVRVTIRTRTTVTLY 433

Query: 301 ------------------------------------------------------------ 352
                                                                       
Sbjct: 434 ELWKERKPNVKYFHVFGSTCYILADREYCQKWDARSGSIMETINVVINDLDSAIKQMNYE 493

[Close]

BLAST of Pay0021762 vs. ExPASy TrEMBL
Match: A0A5D3DX45 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002540 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 7.9e-88
Identity = 253/688 (36.77%), Postives = 282/688 (40.99%), Query Frame = 0


Query: 1   MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITM 60
           MT+DES+ DYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFDMKV  IEEAHDIT 
Sbjct: 134 MTKDESMFDYNKRVLEITNESLLLGEKIPDSKIVRKVLRSLPRKFDMKVAAIEEAHDITT 193

Query: 61  LKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNE 120
           LKLDE FG L TFEMAT +RES                 V  +      ND+G TRRNNE
Sbjct: 194 LKLDELFGSLHTFEMATTDRESMN---------------VQTSNLYRRRNDNGLTRRNNE 253

Query: 121 NSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE------------ 180
           NSDRRS GY+KKKEG+R+IFRCRECGGVGHYQAECP FLRKQKKNFR             
Sbjct: 254 NSDRRSGGYLKKKEGERKIFRCRECGGVGHYQAECPTFLRKQKKNFRVTLSDEEYVDSKD 313

Query: 181 ----------RIQDLIEENERLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSR 240
                     RI D   +++R   + S LK       R  +     T DDAWYFDSGCSR
Sbjct: 314 DDGNINAFTIRITDENTDDDRTENLDSILKAGYNGSHRYGLGFVASTADDAWYFDSGCSR 373

Query: 241 HMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL------------- 300
           HMTGNRSYFTNL +CVT HVTFGDGAK KIIAKGNID+++LPRLN++             
Sbjct: 374 HMTGNRSYFTNLNDCVTKHVTFGDGAKGKIIAKGNIDEDDLPRLNNVRVTIRTRTTVTLY 433

Query: 301 ------------------------------------------------------------ 352
                                                                       
Sbjct: 434 ELWKERKPNVKYFHVFGSTCYILADREYCQKWDARSGSIMETINVVINDLDSAIKQMNYE 493

[Close]

BLAST of Pay0021762 vs. ExPASy TrEMBL
Match: A0A5A7THJ5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00130 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 9.3e-81
Identity = 185/366 (50.55%), Postives = 208/366 (56.83%), Query Frame = 0


Query: 1   MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITM 60
           MTEDES SDYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFD+KVT IEEAHDIT 
Sbjct: 100 MTEDESASDYNKRVLEITNEFLLLGEKIPDSKIVRKVLRSLPRKFDIKVTTIEEAHDITT 159

Query: 61  LKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNE 120
           LKLDE FG LLTFEMATA+RESKKGKGIAFKSTH+  EAVSDT+ANMDE           
Sbjct: 160 LKLDELFGSLLTFEMATADRESKKGKGIAFKSTHIGEEAVSDTKANMDE----------- 219

Query: 121 NSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFR------------- 180
                                CRECGGV HYQAEC  +LRKQ+KNFR             
Sbjct: 220 ---------------------CRECGGVDHYQAECRTYLRKQQKNFRVTLSFEESSDSRD 279

Query: 181 ----------------------------------------------------ERIQDLIE 240
                                                               E+IQDLI 
Sbjct: 280 DDGNINAFTIRIMDENSDDDSECSEESKNDDLTIEKLKVLWKEDCEARAIQKEKIQDLIV 339

Query: 241 ENERLMFVISSLKLKLR----------------------------------EIVFTSVQT 268
           ENE + + + SL++ L+                                   +     +T
Sbjct: 340 ENEHMGWDLWSLQVDLKLHQKSSLFLPQWELNMKRFIQRLASGLRSNLLGERVTIMVEKT 399

[Close]

BLAST of Pay0021762 vs. ExPASy TrEMBL
Match: A0A5A7V3Q5 (Gag-pol polyprotein, related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00970 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 8.2e-77
Identity = 177/317 (55.84%), Postives = 192/317 (60.57%), Query Frame = 0


Query: 43  RKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSD 102
           +KFDMKVT IEEAHDIT LKLDE F  LLTFEM T +RESKKGK  AFKSTHV GE    
Sbjct: 94  KKFDMKVTAIEEAHDITTLKLDELFSSLLTFEMTTVDRESKKGKKNAFKSTHV-GE---- 153

Query: 103 TEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQ 162
            EA    NDDG+TRRNN+N DRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECP FLR Q
Sbjct: 154 -EAYRRRNDDGSTRRNNQNFDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPTFLRNQ 213

Query: 163 KKNFR-----------------------------------ERIQDLIEENERLMFVISSL 222
           KK+FR                                   E+IQDLIEENER M VISSL
Sbjct: 214 KKSFRVTLSDEESESKNDELTIEKLEALWKEDCEAREIQKEKIQDLIEENERFMSVISSL 273

Query: 223 KLKLREI------VFTSV------------------------------------------ 268
           KLKLRE+      +  SV                                          
Sbjct: 274 KLKLREVQNENDQILKSVKMLNSGTENLYSILKSGHNGSHKHGLGFVASRLASRLLFNLL 333

[Close]

BLAST of Pay0021762 vs. ExPASy TrEMBL
Match: A0A5A7SRQ8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00760 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 3.1e-76
Identity = 174/296 (58.78%), Postives = 202/296 (68.24%), Query Frame = 0


Query: 1   MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITM 60
           M EDESVSDYNKRVLEI NE LLL E IPDSKIVRKV++SLP KFDMKVT IEEAHDIT 
Sbjct: 108 MNEDESVSDYNKRVLEIANESLLLCETIPDSKIVRKVVRSLPSKFDMKVTAIEEAHDITT 167

Query: 61  LKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDE----------- 120
           LKLDE FG LLTFEMATA+RESKKGKGIAFKSTHVS EA  DTEANMDE           
Sbjct: 168 LKLDELFGSLLTFEMATADRESKKGKGIAFKSTHVSEEAGCDTEANMDESIALLTKQFTN 227

Query: 121 -------------------NDDG-----TTRRNNENSDRRSDGYIKKKEGDRRIFRCREC 180
                              +DDG     T +  +EN+D  S+  ++ K  +  I +    
Sbjct: 228 ALQNLKSPNATDEESVDSRDDDGNINAFTIQITDENTDDDSECLVEGKNDELSIEKLETL 287

Query: 181 GGVGHYQAECPPFLRKQKKNFRERIQDLIEENERLMFVISSLKLKLREIVFTSVQTTDDA 240
                ++ +C     + +   +ER QDL+ +NERLM+V+SSLKLK RE       T DDA
Sbjct: 288 -----WKEDC-----EARAIQKERFQDLLHKNERLMYVMSSLKLKFRE-------TADDA 347

Query: 241 WYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL 262
           WYFDSGCSRHMTGNRSYFTN+ +CVTG+VTFGDGAKE IIAKGNI K++LPRLND+
Sbjct: 348 WYFDSGCSRHMTGNRSYFTNINDCVTGNVTFGDGAKENIIAKGNIHKDDLPRLNDV 386

[Close]

BLAST of Pay0021762 vs. NCBI nr
Match: TYK28009.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 334.0 bits (855), Expect = 1.6e-87
Identity = 253/688 (36.77%), Postives = 282/688 (40.99%), Query Frame = 0


Query: 1   MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITM 60
           MT+DES+ DYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFDMKV  IEEAHDIT 
Sbjct: 134 MTKDESMFDYNKRVLEITNESLLLGEKIPDSKIVRKVLRSLPRKFDMKVAAIEEAHDITT 193

Query: 61  LKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNE 120
           LKLDE FG L TFEMAT +RES                 V  +      ND+G TRRNNE
Sbjct: 194 LKLDELFGSLHTFEMATTDRESMN---------------VQTSNLYRRRNDNGLTRRNNE 253

Query: 121 NSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE------------ 180
           NSDRRS GY+KKKEG+R+IFRCRECGGVGHYQAECP FLRKQKKNFR             
Sbjct: 254 NSDRRSGGYLKKKEGERKIFRCRECGGVGHYQAECPTFLRKQKKNFRVTLSDEEYVDSKD 313

Query: 181 ----------RIQDLIEENERLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSR 240
                     RI D   +++R   + S LK       R  +     T DDAWYFDSGCSR
Sbjct: 314 DDGNINAFTIRITDENTDDDRTENLDSILKAGYNGSHRYGLGFVASTADDAWYFDSGCSR 373

Query: 241 HMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL------------- 300
           HMTGNRSYFTNL +CVT HVTFGDGAK KIIAKGNID+++LPRLN++             
Sbjct: 374 HMTGNRSYFTNLNDCVTKHVTFGDGAKGKIIAKGNIDEDDLPRLNNVRVTIRTRTTVTLY 433

Query: 301 ------------------------------------------------------------ 352
                                                                       
Sbjct: 434 ELWKERKPNVKYFHVFGSTCYILADREYCQKWDARSGSIMETINVVINDLDSAIKQMNYE 493

[Close]

BLAST of Pay0021762 vs. NCBI nr
Match: KAA0066861.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 334.0 bits (855), Expect = 1.6e-87
Identity = 253/688 (36.77%), Postives = 282/688 (40.99%), Query Frame = 0


Query: 1   MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITM 60
           MT+DES+ DYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFDMKV  IEEAHDIT 
Sbjct: 134 MTKDESMFDYNKRVLEITNESLLLGEKIPDSKIVRKVLRSLPRKFDMKVAAIEEAHDITT 193

Query: 61  LKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNE 120
           LKLDE FG L TFEMAT +RES                 V  +      ND+G TRRNNE
Sbjct: 194 LKLDELFGSLHTFEMATTDRESMN---------------VQTSNLYRRRNDNGLTRRNNE 253

Query: 121 NSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE------------ 180
           NSDRRS GY+KKKEG+R+IFRCRECGGVGHYQAECP FLRKQKKNFR             
Sbjct: 254 NSDRRSGGYLKKKEGERKIFRCRECGGVGHYQAECPTFLRKQKKNFRVTLSDEEYVDSKD 313

Query: 181 ----------RIQDLIEENERLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSR 240
                     RI D   +++R   + S LK       R  +     T DDAWYFDSGCSR
Sbjct: 314 DDGNINAFTIRITDENTDDDRTENLDSILKAGYNGSHRYGLGFVASTADDAWYFDSGCSR 373

Query: 241 HMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL------------- 300
           HMTGNRSYFTNL +CVT HVTFGDGAK KIIAKGNID+++LPRLN++             
Sbjct: 374 HMTGNRSYFTNLNDCVTKHVTFGDGAKGKIIAKGNIDEDDLPRLNNVRVTIRTRTTVTLY 433

Query: 301 ------------------------------------------------------------ 352
                                                                       
Sbjct: 434 ELWKERKPNVKYFHVFGSTCYILADREYCQKWDARSGSIMETINVVINDLDSAIKQMNYE 493

[Close]

BLAST of Pay0021762 vs. NCBI nr
Match: KAA0040865.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 1.9e-80
Identity = 185/366 (50.55%), Postives = 208/366 (56.83%), Query Frame = 0


Query: 1   MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITM 60
           MTEDES SDYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFD+KVT IEEAHDIT 
Sbjct: 100 MTEDESASDYNKRVLEITNEFLLLGEKIPDSKIVRKVLRSLPRKFDIKVTTIEEAHDITT 159

Query: 61  LKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNE 120
           LKLDE FG LLTFEMATA+RESKKGKGIAFKSTH+  EAVSDT+ANMDE           
Sbjct: 160 LKLDELFGSLLTFEMATADRESKKGKGIAFKSTHIGEEAVSDTKANMDE----------- 219

Query: 121 NSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFR------------- 180
                                CRECGGV HYQAEC  +LRKQ+KNFR             
Sbjct: 220 ---------------------CRECGGVDHYQAECRTYLRKQQKNFRVTLSFEESSDSRD 279

Query: 181 ----------------------------------------------------ERIQDLIE 240
                                                               E+IQDLI 
Sbjct: 280 DDGNINAFTIRIMDENSDDDSECSEESKNDDLTIEKLKVLWKEDCEARAIQKEKIQDLIV 339

Query: 241 ENERLMFVISSLKLKLR----------------------------------EIVFTSVQT 268
           ENE + + + SL++ L+                                   +     +T
Sbjct: 340 ENEHMGWDLWSLQVDLKLHQKSSLFLPQWELNMKRFIQRLASGLRSNLLGERVTIMVEKT 399

[Close]

BLAST of Pay0021762 vs. NCBI nr
Match: KAA0060361.1 (gag-pol polyprotein, related [Cucumis melo var. makuwa] >TYK22104.1 gag-pol polyprotein, related [Cucumis melo var. makuwa])

HSP 1 Score: 297.4 bits (760), Expect = 1.7e-76
Identity = 177/317 (55.84%), Postives = 192/317 (60.57%), Query Frame = 0


Query: 43  RKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSD 102
           +KFDMKVT IEEAHDIT LKLDE F  LLTFEM T +RESKKGK  AFKSTHV GE    
Sbjct: 94  KKFDMKVTAIEEAHDITTLKLDELFSSLLTFEMTTVDRESKKGKKNAFKSTHV-GE---- 153

Query: 103 TEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQ 162
            EA    NDDG+TRRNN+N DRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECP FLR Q
Sbjct: 154 -EAYRRRNDDGSTRRNNQNFDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPTFLRNQ 213

Query: 163 KKNFR-----------------------------------ERIQDLIEENERLMFVISSL 222
           KK+FR                                   E+IQDLIEENER M VISSL
Sbjct: 214 KKSFRVTLSDEESESKNDELTIEKLEALWKEDCEAREIQKEKIQDLIEENERFMSVISSL 273

Query: 223 KLKLREI------VFTSV------------------------------------------ 268
           KLKLRE+      +  SV                                          
Sbjct: 274 KLKLREVQNENDQILKSVKMLNSGTENLYSILKSGHNGSHKHGLGFVASRLASRLLFNLL 333

[Close]

BLAST of Pay0021762 vs. NCBI nr
Match: KAA0032736.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ98767.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 295.4 bits (755), Expect = 6.4e-76
Identity = 174/296 (58.78%), Postives = 202/296 (68.24%), Query Frame = 0


Query: 1   MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITM 60
           M EDESVSDYNKRVLEI NE LLL E IPDSKIVRKV++SLP KFDMKVT IEEAHDIT 
Sbjct: 108 MNEDESVSDYNKRVLEIANESLLLCETIPDSKIVRKVVRSLPSKFDMKVTAIEEAHDITT 167

Query: 61  LKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDE----------- 120
           LKLDE FG LLTFEMATA+RESKKGKGIAFKSTHVS EA  DTEANMDE           
Sbjct: 168 LKLDELFGSLLTFEMATADRESKKGKGIAFKSTHVSEEAGCDTEANMDESIALLTKQFTN 227

Query: 121 -------------------NDDG-----TTRRNNENSDRRSDGYIKKKEGDRRIFRCREC 180
                              +DDG     T +  +EN+D  S+  ++ K  +  I +    
Sbjct: 228 ALQNLKSPNATDEESVDSRDDDGNINAFTIQITDENTDDDSECLVEGKNDELSIEKLETL 287

Query: 181 GGVGHYQAECPPFLRKQKKNFRERIQDLIEENERLMFVISSLKLKLREIVFTSVQTTDDA 240
                ++ +C     + +   +ER QDL+ +NERLM+V+SSLKLK RE       T DDA
Sbjct: 288 -----WKEDC-----EARAIQKERFQDLLHKNERLMYVMSSLKLKFRE-------TADDA 347

Query: 241 WYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL 262
           WYFDSGCSRHMTGNRSYFTN+ +CVTG+VTFGDGAKE IIAKGNI K++LPRLND+
Sbjct: 348 WYFDSGCSRHMTGNRSYFTNINDCVTGNVTFGDGAKENIIAKGNIHKDDLPRLNDV 386

The following BLAST results are available for this feature:

BLAST of Pay0021762 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.3e-14	39.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.2e-12	40.63	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.4e-11	44.00	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.9e-10	36.08	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Pay0021762 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VMH8	7.9e-88	36.77	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G...	[more]
A0A5D3DX45	7.9e-88	36.77	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G...	[more]
A0A5A7THJ5	9.3e-81	50.55	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G...	[more]
A0A5A7V3Q5	8.2e-77	55.84	Gag-pol polyprotein, related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7SRQ8	3.1e-76	58.78	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G...	[more]

BLAST of Pay0021762 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28009.1	1.6e-87	36.77	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066861.1	1.6e-87	36.77	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0040865.1	1.9e-80	50.55	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0060361.1	1.7e-76	55.84	gag-pol polyprotein, related [Cucumis melo var. makuwa] >TYK22104.1 gag-pol poly...	[more]
KAA0032736.1	6.4e-76	58.78	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ98767.1 gag-pol polyprotein [...	[more]

BLAST of Pay0021762 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..67 e-value: 1.6E-8 score: 34.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..128
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..275
None	No IPR available	PANTHER	PTHR34676:SF11	ZINC FINGER, CCHC-TYPE-RELATED	coord: 1..275
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 260..338 e-value: 1.55987E-35 score: 124.503
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 141..156 score: 9.141752
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 128..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0021762.1	Pay0021762.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding