Pay0021714 (gene) Melon (Payzawat) v1

Overview


Name	Pay0021714
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein
Location	chr12: 19789315 .. 19790451 (+)
RNA-Seq Expression	Pay0021714
Synteny	Pay0021714

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAAGGTGTTTTGCCATTTTATGTCATTTACTAAGGACGACTGCTAGATTAGTCAGAACAGAAGTTATAGATGTAGAGGAGATGGTTGCCATGTTCCTGCATATATTAGCTCATGACATGAAGAATCGAATGATATAAAGGAAATTTGTACGGCCTGGTGAGACTGTTTCTAGACATTTCAACCTTGTCTTGTTAGTAGTTTTGCAGTTACACGACGAGTTGTTGAAAAAACCTCAGCCAGTAACAAACTTATGCACGGATCTGAGATGGAAATGGTTTGAGGTAAATACCAATTGTCTGAATGTTAGTTAGACCTACCAAACAATATGCGTTAGATGGCTATTTCATACAAATTTACGTTATCATATCGTAGAATTGTCTTGGTGCGTTAGATGGCACATACATTAAGGTGAATGTCACTGCAATCGATCGTCCAAGGTACAGGACACGGAAGGGTGAAGTTGCGACAAATGTACTTGGTGTTTGCAATACAAAAGGTGATTTCGTGTTTGTTTTATCTGGGTAGGAAGGATCAGTCGTTGATTCCAGAATTCTTAGAGATGCAATATCAAGACATAACGAACTGAAAGTTCTAAAGGGTAAATAGCTAGATGTTTTATCTCTTCGTAGTCTTTATATTCATAGGACAGGAATTCAAATAGTCGAGTTTTGAATAGAGTATTATTATCTATGTGATGTTGGGTACCCAAATTCTGAGGTTTTTTGGCCCCATATAGGGGAGAAAGATATCATCTTTCAGAGTGGCGAGGAGGAGGTAATGCACCAACAACAACTCAAGAGTTCTTCAACATAAAACATTCGTCGGCACAGAATGTCATCGAAAGAGAATTTGGGTTGTTAAAAGGTCGCTGGGCAATTTTAAGAGGAAAGTCATACTACCCAGTCGATGTCCAATGTCGAACAATCATGGCGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATCAATGATTTGGATGAGGCTGATTCAACATACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGATTGAATGGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAGTAG

mRNA sequence

ATGGATAGAAGGTGTTTTGCCATTTTATGTCATTTACTAAGGACGACTGCTAGATTAGTCAGAACAGAAGTTATAGATGTAGAGGAGATGGTTGCCATGAAATTTGTACGGCCTGGTGAGACTGTTTCTAGACATTTCAACCTTGTCTTGTTAGTAGTTTTGCAGTTACACGACGAGTTGTTGAAAAAACCTCAGCCAGTAACAAACTTATGCACGGATCTGAGATGGAAATGGTTTGAGAATTGTCTTGGTGCGTTAGATGGCACATACATTAAGGTGAATGTCACTGCAATCGATCGTCCAAGGTACAGGACACGGAAGGGTGAAGTTGCGACAAATGTACTTGGTGTTTGCAATACAAAAGAGTTCTTCAACATAAAACATTCGTCGGCACAGAATGTCATCGAAAGAGAATTTGGGTTGTTAAAAGGTCGCTGGGCAATTTTAAGAGGAAAGTCATACTACCCAGTCGATGTCCAATGTCGAACAATCATGGCGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATCAATGATTTGGATGAGGCTGATTCAACATACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGATTGAATGGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAGTAG

Coding sequence (CDS)

ATGGATAGAAGGTGTTTTGCCATTTTATGTCATTTACTAAGGACGACTGCTAGATTAGTCAGAACAGAAGTTATAGATGTAGAGGAGATGGTTGCCATGAAATTTGTACGGCCTGGTGAGACTGTTTCTAGACATTTCAACCTTGTCTTGTTAGTAGTTTTGCAGTTACACGACGAGTTGTTGAAAAAACCTCAGCCAGTAACAAACTTATGCACGGATCTGAGATGGAAATGGTTTGAGAATTGTCTTGGTGCGTTAGATGGCACATACATTAAGGTGAATGTCACTGCAATCGATCGTCCAAGGTACAGGACACGGAAGGGTGAAGTTGCGACAAATGTACTTGGTGTTTGCAATACAAAAGAGTTCTTCAACATAAAACATTCGTCGGCACAGAATGTCATCGAAAGAGAATTTGGGTTGTTAAAAGGTCGCTGGGCAATTTTAAGAGGAAAGTCATACTACCCAGTCGATGTCCAATGTCGAACAATCATGGCGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATCAATGATTTGGATGAGGCTGATTCAACATACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGATTGAATGGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAGTAG

Protein sequence

MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAMKFVRPGETVSRHFNLVLLVVLQLHDELLKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTAIDRPRYRTRKGEVATNVLGVCNTKEFFNIKHSSAQNVIEREFGLLKGRWAILRGKSYYPVDVQCRTIMACCLLHNLINREMTNSEIINDLDEADSTYATTGGDEINYIEASNEWIEWRDQLAHTMFSDWELRDQ

Homology

[Close]

BLAST of Pay0021714 vs. ExPASy TrEMBL
Match: A0A5A7V6M3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00030 PE=3 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.7e-107
Identity = 203/260 (78.08%), Postives = 209/260 (80.38%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAMKFVRPGETVSRHFNLVLLVVLQLHDEL 60
           MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM               + ++   LH+EL
Sbjct: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM--------------FLHILAHDLHNEL 60

Query: 61  LKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTAIDRPRYRTRKGEVATNVLGVCNT 120
           LKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTA DRPRYRT+KGEVATNVLGVCNT
Sbjct: 61  LKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTATDRPRYRTQKGEVATNVLGVCNT 120

Query: 121 K-----------------------------EFFNIKHSSAQNVIEREFGLLKGRWAILRG 180
           K                             EFFNIKHSSAQNVIEREFGLLKGRWAILRG
Sbjct: 121 KGDFVFVLSGGERYHLSKWRGGGNAPTTTQEFFNIKHSSAQNVIEREFGLLKGRWAILRG 180

Query: 181 KSYYPVDVQCRTIMACCLLHNLINREMTNSEIINDLDEADSTYATTGGDEINYIEASNEW 232
           KSYYPVDVQCRTIMACCLLHNLINREMTNSEII+DLDEADSTYATTGGDEINYIEASNEW
Sbjct: 181 KSYYPVDVQCRTIMACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEW 240

[Close]

BLAST of Pay0021714 vs. ExPASy TrEMBL
Match: A0A5A7U0J9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002560 PE=3 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 9.0e-101
Identity = 190/248 (76.61%), Postives = 201/248 (81.05%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM----------------KFVRPGETVSR 60
           MDRRCFAILCHLLRT+A LV TEVIDVEEMVAM                +F R GETVSR
Sbjct: 1   MDRRCFAILCHLLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSR 60

Query: 61  HFNLVLLVVLQLHDELLKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTAIDRPR-Y 120
           HFN+VLL +L+LHDELLKKPQPVTN CTD RWKWFENCLGALDGTYIKVNV+AIDRPR  
Sbjct: 61  HFNIVLLAILRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSAIDRPRGE 120

Query: 121 RTRKGEVATNVLGVCNTKEFFNIKHSSAQNVIEREFGLLKGRWAILRGKSYYPVDVQCRT 180
           R    E           +EFFN+KH SA+NVIER FGLLKGRW ILRGKSYYPVDVQCRT
Sbjct: 121 RYHLSEWRGESNAPTTAREFFNMKHLSARNVIERAFGLLKGRWTILRGKSYYPVDVQCRT 180

Query: 181 IMACCLLHNLINREMTNSEIINDLDEADSTYATTGGDEINYIEASNEWIEWRDQLAHTMF 232
           IMACCLLHNLI REMTN+EII+DLDE DSTYATTGGDEINYIEASNEW E RDQLAHTMF
Sbjct: 181 IMACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMF 240

[Close]

BLAST of Pay0021714 vs. ExPASy TrEMBL
Match: A0A1S3B4J8 (uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=3 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 9.0e-101
Identity = 190/248 (76.61%), Postives = 201/248 (81.05%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM----------------KFVRPGETVSR 60
           MDRRCFAILCHLLRT+A LV TEVIDVEEMVAM                +F R GETVSR
Sbjct: 1   MDRRCFAILCHLLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSR 60

Query: 61  HFNLVLLVVLQLHDELLKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTAIDRPR-Y 120
           HFN+VLL +L+LHDELLKKPQPVTN CTD RWKWFENCLGALDGTYIKVNV+AIDRPR  
Sbjct: 61  HFNIVLLAILRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSAIDRPRGE 120

Query: 121 RTRKGEVATNVLGVCNTKEFFNIKHSSAQNVIEREFGLLKGRWAILRGKSYYPVDVQCRT 180
           R    E           +EFFN+KH SA+NVIER FGLLKGRW ILRGKSYYPVDVQCRT
Sbjct: 121 RYHLSEWRGESNAPTTAREFFNMKHLSARNVIERAFGLLKGRWTILRGKSYYPVDVQCRT 180

Query: 181 IMACCLLHNLINREMTNSEIINDLDEADSTYATTGGDEINYIEASNEWIEWRDQLAHTMF 232
           IMACCLLHNLI REMTN+EII+DLDE DSTYATTGGDEINYIEASNEW E RDQLAHTMF
Sbjct: 181 IMACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMF 240

[Close]

BLAST of Pay0021714 vs. ExPASy TrEMBL
Match: A0A5D3CDG6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002070 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.4e-100
Identity = 189/248 (76.21%), Postives = 200/248 (80.65%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM----------------KFVRPGETVSR 60
           MDRRCFAILCHLLRT+A LV TEVIDVEEMVAM                +F R GETVSR
Sbjct: 1   MDRRCFAILCHLLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSR 60

Query: 61  HFNLVLLVVLQLHDELLKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTAIDRPR-Y 120
           HFN+VLL +L+LHDELLKKPQPVTN CTD RWKWFENCLGALDGTYIKVNV+AIDRPR  
Sbjct: 61  HFNIVLLAILRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSAIDRPRGE 120

Query: 121 RTRKGEVATNVLGVCNTKEFFNIKHSSAQNVIEREFGLLKGRWAILRGKSYYPVDVQCRT 180
           R    E           +EFFN+KH SA+NVIER FGLLKG W ILRGKSYYPVDVQCRT
Sbjct: 121 RYHLSEWRGESNAPTTAREFFNMKHLSARNVIERAFGLLKGHWTILRGKSYYPVDVQCRT 180

Query: 181 IMACCLLHNLINREMTNSEIINDLDEADSTYATTGGDEINYIEASNEWIEWRDQLAHTMF 232
           IMACCLLHNLI REMTN+EII+DLDE DSTYATTGGDEINYIEASNEW E RDQLAHTMF
Sbjct: 181 IMACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMF 240

[Close]

BLAST of Pay0021714 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.1e-98
Identity = 202/325 (62.15%), Postives = 214/325 (65.85%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM----------------KFVRPGETVSR 60
           MDRRCFAILCHLLRTTA LV TEVIDVEEMVAM                +FVR GETVSR
Sbjct: 1   MDRRCFAILCHLLRTTAGLVETEVIDVEEMVAMFLHILAHVVKNRMIQREFVRSGETVSR 60

Query: 61  HFNLVLLVVLQLHDELLKKPQPVTNLCTDLRWKWFE---NCLGALDGTYIKVNVTAIDRP 120
           HFN+VLL   +LHDELLKKPQPVTN CTD RWKWFE   NCL + +GTYIKVNV+A DRP
Sbjct: 61  HFNIVLLAGFRLHDELLKKPQPVTNSCTDPRWKWFEVNTNCLDS-NGTYIKVNVSATDRP 120

Query: 121 RYRTRKGEVATNVLGVCNTK---------------------------------------- 180
           RYRTRKGEVATNVLG C+TK                                        
Sbjct: 121 RYRTRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLC 180

Query: 181 -----------------------------------EFFNIKHSSAQNVIEREFGLLKGRW 232
                                              EFFN+KHSS++NVIER FGLLKG W
Sbjct: 181 DAGYPNAEGFLAPYRGERYHLSEWRGESNAPTTTREFFNMKHSSSRNVIERAFGLLKGCW 240

[Close]

BLAST of Pay0021714 vs. NCBI nr
Match: KAA0063753.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 398.7 bits (1023), Expect = 3.5e-107
Identity = 203/260 (78.08%), Postives = 209/260 (80.38%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAMKFVRPGETVSRHFNLVLLVVLQLHDEL 60
           MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM               + ++   LH+EL
Sbjct: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM--------------FLHILAHDLHNEL 60

Query: 61  LKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTAIDRPRYRTRKGEVATNVLGVCNT 120
           LKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTA DRPRYRT+KGEVATNVLGVCNT
Sbjct: 61  LKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTATDRPRYRTQKGEVATNVLGVCNT 120

Query: 121 K-----------------------------EFFNIKHSSAQNVIEREFGLLKGRWAILRG 180
           K                             EFFNIKHSSAQNVIEREFGLLKGRWAILRG
Sbjct: 121 KGDFVFVLSGGERYHLSKWRGGGNAPTTTQEFFNIKHSSAQNVIEREFGLLKGRWAILRG 180

Query: 181 KSYYPVDVQCRTIMACCLLHNLINREMTNSEIINDLDEADSTYATTGGDEINYIEASNEW 232
           KSYYPVDVQCRTIMACCLLHNLINREMTNSEII+DLDEADSTYATTGGDEINYIEASNEW
Sbjct: 181 KSYYPVDVQCRTIMACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEW 240

[Close]

BLAST of Pay0021714 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 376.3 bits (965), Expect = 1.9e-100
Identity = 190/248 (76.61%), Postives = 201/248 (81.05%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM----------------KFVRPGETVSR 60
           MDRRCFAILCHLLRT+A LV TEVIDVEEMVAM                +F R GETVSR
Sbjct: 1   MDRRCFAILCHLLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSR 60

Query: 61  HFNLVLLVVLQLHDELLKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTAIDRPR-Y 120
           HFN+VLL +L+LHDELLKKPQPVTN CTD RWKWFENCLGALDGTYIKVNV+AIDRPR  
Sbjct: 61  HFNIVLLAILRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSAIDRPRGE 120

Query: 121 RTRKGEVATNVLGVCNTKEFFNIKHSSAQNVIEREFGLLKGRWAILRGKSYYPVDVQCRT 180
           R    E           +EFFN+KH SA+NVIER FGLLKGRW ILRGKSYYPVDVQCRT
Sbjct: 121 RYHLSEWRGESNAPTTAREFFNMKHLSARNVIERAFGLLKGRWTILRGKSYYPVDVQCRT 180

Query: 181 IMACCLLHNLINREMTNSEIINDLDEADSTYATTGGDEINYIEASNEWIEWRDQLAHTMF 232
           IMACCLLHNLI REMTN+EII+DLDE DSTYATTGGDEINYIEASNEW E RDQLAHTMF
Sbjct: 181 IMACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMF 240

[Close]

BLAST of Pay0021714 vs. NCBI nr
Match: TYK08389.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 374.4 bits (960), Expect = 7.1e-100
Identity = 189/248 (76.21%), Postives = 200/248 (80.65%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM----------------KFVRPGETVSR 60
           MDRRCFAILCHLLRT+A LV TEVIDVEEMVAM                +F R GETVSR
Sbjct: 1   MDRRCFAILCHLLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSR 60

Query: 61  HFNLVLLVVLQLHDELLKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTAIDRPR-Y 120
           HFN+VLL +L+LHDELLKKPQPVTN CTD RWKWFENCLGALDGTYIKVNV+AIDRPR  
Sbjct: 61  HFNIVLLAILRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSAIDRPRGE 120

Query: 121 RTRKGEVATNVLGVCNTKEFFNIKHSSAQNVIEREFGLLKGRWAILRGKSYYPVDVQCRT 180
           R    E           +EFFN+KH SA+NVIER FGLLKG W ILRGKSYYPVDVQCRT
Sbjct: 121 RYHLSEWRGESNAPTTAREFFNMKHLSARNVIERAFGLLKGHWTILRGKSYYPVDVQCRT 180

Query: 181 IMACCLLHNLINREMTNSEIINDLDEADSTYATTGGDEINYIEASNEWIEWRDQLAHTMF 232
           IMACCLLHNLI REMTN+EII+DLDE DSTYATTGGDEINYIEASNEW E RDQLAHTMF
Sbjct: 181 IMACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMF 240

[Close]

BLAST of Pay0021714 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 2.3e-98
Identity = 202/325 (62.15%), Postives = 214/325 (65.85%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM----------------KFVRPGETVSR 60
           MDRRCFAILCHLLRTTA LV TEVIDVEEMVAM                +FVR GETVSR
Sbjct: 1   MDRRCFAILCHLLRTTAGLVETEVIDVEEMVAMFLHILAHVVKNRMIQREFVRSGETVSR 60

Query: 61  HFNLVLLVVLQLHDELLKKPQPVTNLCTDLRWKWFE---NCLGALDGTYIKVNVTAIDRP 120
           HFN+VLL   +LHDELLKKPQPVTN CTD RWKWFE   NCL + +GTYIKVNV+A DRP
Sbjct: 61  HFNIVLLAGFRLHDELLKKPQPVTNSCTDPRWKWFEVNTNCLDS-NGTYIKVNVSATDRP 120

Query: 121 RYRTRKGEVATNVLGVCNTK---------------------------------------- 180
           RYRTRKGEVATNVLG C+TK                                        
Sbjct: 121 RYRTRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLC 180

Query: 181 -----------------------------------EFFNIKHSSAQNVIEREFGLLKGRW 232
                                              EFFN+KHSS++NVIER FGLLKG W
Sbjct: 181 DAGYPNAEGFLAPYRGERYHLSEWRGESNAPTTTREFFNMKHSSSRNVIERAFGLLKGCW 240

[Close]

BLAST of Pay0021714 vs. NCBI nr
Match: XP_008455792.1 (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 357.8 bits (917), Expect = 6.9e-95
Identity = 196/322 (60.87%), Postives = 203/322 (63.04%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM----------------KFVRPGETVSR 60
           MDRRCFAILCHLLRTTA LV TEVIDVEEMVAM                +FVR GETVSR
Sbjct: 1   MDRRCFAILCHLLRTTAGLVETEVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSR 60

Query: 61  HFNLVLLVVLQLHDELLKKPQPVTNLCTDLRWKWFENCLGALDGTYIKVNVTAIDRPRYR 120
           HFN+VLL   +LHDELLKKPQPVTN CTD RWKWFENCLGALDGTYIKVNV+A DRPRYR
Sbjct: 61  HFNIVLLAGFRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYR 120

Query: 121 TRKGEVATNVLGVCNTK------------------------------------------- 180
           TRKGEVATNVLG C+TK                                           
Sbjct: 121 TRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAG 180

Query: 181 --------------------------------EFFNIKHSSAQNVIEREFGLLKGRWAIL 232
                                           EFFN+KHSSA+NVIER FGLLKGRWAIL
Sbjct: 181 YPNAEGFLAPYRGERYHLSEWRGESNAPTTAREFFNMKHSSARNVIERAFGLLKGRWAIL 240

[Close]

BLAST of Pay0021714 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 7.0e-13
Identity = 69/283 (24.38%), Postives = 101/283 (35.69%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM----------------KFVRPGETVSR 60
           MD+  F  LC LL+T   L  T  I +E  +A+                 F   GET+SR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNLVLLVVLQLHDELLKKPQPVTNLCT-DLRWKWFENCLGALDGTYIKVNVTAIDRPRY 120
           HFN VL  V+ +  +     QP +N  T +    +F++C+G +D  +I V V   ++  +
Sbjct: 108 HFNNVLNAVIAISKDFF---QPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQGPF 167

Query: 121 RTRKGEVATNVLGVCN-------------------------------------------- 180
           R   G +  NVL   +                                            
Sbjct: 168 RNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVDN 227

Query: 181 ----------------------TKEFFNIKHSSAQNVIEREFGLLKGRWAILRGKSYYPV 201
                                  KE FN +H      I R FG LK R+ IL     YP+
Sbjct: 228 KYPNLPGFIAPYHGVSTNSREEAKEMFNERHKLLHRAIHRTFGALKERFPILLSAPPYPL 287

[Close]

BLAST of Pay0021714 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-09
Identity = 44/147 (29.93%), Postives = 64/147 (43.54%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTARLVRTEVIDVEEMVAM----------------KFVRPGETVSR 60
           M   CF  LC++L+T   L  T  I +EE VAM                +F R  ETV R
Sbjct: 72  MSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQR 131

Query: 61  HFNLVLLVVLQLHDELLKKP------QPVTNLCTDLR-WKWFENCLGALDGTYIKVNVTA 120
            F  VL     L  + ++ P      +    L  D R W +F   +GA+DGT++ V V  
Sbjct: 132 KFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKP 191

Query: 121 IDRPRYRTRKGEVATNVLGVCNTKEFF 125
             +  Y  R    + N++ +C+ K  F
Sbjct: 192 DLQGMYWNRHDNASLNIMAICDLKMLF 218

[Close]

BLAST of Pay0021714 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-08
Identity = 35/117 (29.91%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 122 EFFNIKHSSAQNVIEREFGLLKGRWAILRGKSYYPVDVQCRTIMACCLLHNLINREMTN- 181
           E FN++H S +NVIER FG+ K R+AI +    +    Q   ++ C  LHN + +E  + 
Sbjct: 88  ELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCAALHNFLRKECRSD 147

Query: 182 -----SEIINDLDEADSTYATTGGDEINY---IEASNEWIE----WRDQLAHTMFSD 226
                 E+ N+ D  ++       +EI+    +EA  +  E    WR  +A  M+ D
Sbjct: 148 EADFPDEVGNEGDVVNNEGNAMNTNEIDNEEPLEAQKQDRENTNMWRKSMAEDMWKD 204

[Close]

BLAST of Pay0021714 vs. TAIR 10
Match: AT5G12010.1 (unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05
Identity = 22/54 (40.74%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 120 TKEFFNIKHSSAQNVIEREFGLLKGRWAILRGKSYYPVDVQCRTIMACCLLHNL 174
           T+  FN K S  Q V +  FG LKGRWA L+ ++   +      + ACC+LHN+
Sbjct: 395 TQHAFNEKMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNI 448

[Close]

BLAST of Pay0021714 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-05
Identity = 17/44 (38.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 76  WKWFENCLGALDGTYIKVNVTAIDRPRYRTRKGEVATNVLGVCN 120
           + +F++C+GA+D T+I   V+    P +R RKG+++ N+L  CN
Sbjct: 19  YPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACN 62

The following BLAST results are available for this feature:

BLAST of Pay0021714 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0021714 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6M3	1.7e-107	78.08	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U0J9	9.0e-101	76.61	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3B4J8	9.0e-101	76.61	uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=...	[more]
A0A5D3CDG6	3.4e-100	76.21	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3DG22	1.1e-98	62.15	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Pay0021714 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063753.1	3.5e-107	78.08	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nucleas...	[more]
XP_008441953.1	1.9e-100	76.61	PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put...	[more]
TYK08389.1	7.1e-100	76.21	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0062747.1	2.3e-98	62.15	retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p...	[more]
XP_008455792.1	6.9e-95	60.87	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]

BLAST of Pay0021714 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	7.0e-13	24.38	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	8.0e-09	29.93	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	5.2e-08	29.91	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G12010.1	1.4e-05	40.74	unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, ...	[more]
AT5G28950.1	3.1e-05	38.64	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 122..172 e-value: 2.3E-7 score: 30.6
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 120..224
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 120..224 coord: 1..119
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0021714.1	Pay0021714.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding