Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAAGAGAAAAGATAAAATTGGAATATATCTCGAAGGTGGAAATACAAGTACAACAGACAGCAATATGTTTACTGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTCAGCACTGTCGGAGATACAGTCAACGGTGAAGGTGGCGAGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCCTTGCTGGAGGCAACGGCGGAGGTGGCAGTGGAGTAAGTATTCATGAGACAGGTTGTGGTGGAGGTGATAGCGGAGGTAGAGGGGTTTCTGAACATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGAGGTCATAGTTATGGAGGCGGAGGAACAAGTTCTAATGATCACGGCGGAGGTGGAAGTGGAGGTGGAGGGTTTTCTGATTTTGGAGGGGGAGGATCATCTATTTGGTGA
mRNA sequence
ATGTCTAAGAGAAAAGATAAAATTGGAATATATCTCGAAGGTGGAAATACAAGTACAACAGACAGCAATATGTTTACTGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTCAGCACTGTCGGAGATACAGTCAACGGTGAAGGTGGCGAGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCCTTGCTGGAGGCAACGGCGGAGGTGGCAGTGGAGTAAGTATTCATGAGACAGGTTGTGGTGGAGGTGATAGCGGAGGTAGAGGGGTTTCTGAACATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGAGGTCATAGTTATGGAGGCGGAGGAACAAGTTCTAATGATCACGGCGGAGGTGGAAGTGGAGGTGGAGGGTTTTCTGATTTTGGAGGGGGAGGATCATCTATTTGGTGA
Coding sequence (CDS)
ATGTCTAAGAGAAAAGATAAAATTGGAATATATCTCGAAGGTGGAAATACAAGTACAACAGACAGCAATATGTTTACTGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTCAGCACTGTCGGAGATACAGTCAACGGTGAAGGTGGCGAGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCCTTGCTGGAGGCAACGGCGGAGGTGGCAGTGGAGTAAGTATTCATGAGACAGGTTGTGGTGGAGGTGATAGCGGAGGTAGAGGGGTTTCTGAACATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGAGGTCATAGTTATGGAGGCGGAGGAACAAGTTCTAATGATCACGGCGGAGGTGGAAGTGGAGGTGGAGGGTTTTCTGATTTTGGAGGGGGAGGATCATCTATTTGGTGA
Protein sequence
MSKRKDKIGIYLEGGNTSTTDSNMFTGSSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDGNGGLAGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGGHSYGGGGTSSNDHGGGGSGGGGFSDFGGGGSSIW
Homology
BLAST of Pay0021067 vs. ExPASy TrEMBL
Match:
A0A5A7TNP5 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00930 PE=4 SV=1)
HSP 1 Score: 246.5 bits (628), Expect = 6.6e-62
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0
Query: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGSSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
MSKRKDKIGIYLEGGNTSTTDSNMFTG+SYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG
Sbjct: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
Query: 61 NGGLAGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGGHSYGGGGTSSNDH 120
NGG+ GGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD GGHSYGGGGTSSNDH
Sbjct: 61 NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYGGGGTSSNDH 120
Query: 121 GGGGSGGGGFSDFGGGGSSIW 142
GGGGSGGGGFSDFGGGGSSIW
Sbjct: 121 GGGGSGGGGFSDFGGGGSSIW 140
BLAST of Pay0021067 vs. ExPASy TrEMBL
Match:
A0A1S3BNC1 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491739 PE=4 SV=1)
HSP 1 Score: 246.5 bits (628), Expect = 6.6e-62
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0
Query: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGSSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
MSKRKDKIGIYLEGGNTSTTDSNMFTG+SYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG
Sbjct: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
Query: 61 NGGLAGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGGHSYGGGGTSSNDH 120
NGG+ GGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD GGHSYGGGGTSSNDH
Sbjct: 61 NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYGGGGTSSNDH 120
Query: 121 GGGGSGGGGFSDFGGGGSSIW 142
GGGGSGGGGFSDFGGGGSSIW
Sbjct: 121 GGGGSGGGGFSDFGGGGSSIW 140
BLAST of Pay0021067 vs. ExPASy TrEMBL
Match:
A0A0A0KXB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297450 PE=4 SV=1)
HSP 1 Score: 194.9 bits (494), Expect = 2.3e-46
Identity = 121/171 (70.76%), Postives = 124/171 (72.51%), Query Frame = 0
Query: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGSSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
MS KDK GIY+EGGNTSTTDSNMF+GSSYGGWGWDWTFSTVGDTVNG G NSLEVGDG
Sbjct: 1 MSTGKDKNGIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTVGDTVNGGSGRNSLEVGDG 60
Query: 61 NGGLAGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGGHSYGGGGTSSNDH 120
NGGL GG GGGGS SIHET CG GD GG GVS+HGVGVSSHVDGGG SYGGGGTSSND
Sbjct: 61 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYGGGGTSSNDR 120
Query: 121 ------------------------------GGGGSGGGGFSDFGGGGSSIW 142
GGGG GGGGFSDFGGGGSSIW
Sbjct: 121 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFSDFGGGGSSIW 171
BLAST of Pay0021067 vs. ExPASy TrEMBL
Match:
A0A6J1HSN5 (loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 4.9e-09
Identity = 77/181 (42.54%), Postives = 91/181 (50.28%), Query Frame = 0
Query: 2 SKRKDKIGIYLEGGNT--STTDSNMFTGSS------YGGWGWDWTFSTVGDTVNGE---- 61
+ R K G Y+EGGN D + G++ YGGWGWDWTFS+VGDT NG
Sbjct: 17 ASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNDGGG 76
Query: 62 ----GGENSLEVGD-----GNGGLAGGNGGGGSGVSIHETGCGGG---------DSGGRG 121
GG EVG G G G G G+G S HE G G G GG
Sbjct: 77 CDVGGGGGDSEVGGRGSDVGRGDGVGCGNGDGNGASFHEAGGGDGGVASSFDECGGGGGT 136
Query: 122 VSEHGVGVSSHVDGGGHSYGGGGTS--------SNDHGGGG-------SGGGGFSDFGGG 138
VS+HG G S H+DGG ++GGG +S S+DHGGGG GGGG SD+GGG
Sbjct: 137 VSDHGGGGSFHMDGGHSNFGGGASSHGGGGDGASHDHGGGGGGASYDHGGGGGVSDYGGG 196
BLAST of Pay0021067 vs. ExPASy TrEMBL
Match:
A0A6J1EUX9 (glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 78/186 (41.94%), Postives = 92/186 (49.46%), Query Frame = 0
Query: 2 SKRKDKIGIYLEGGNT--STTDSNMFTGSS------YGGWGWDWTFSTVGDTVNGEG-GE 61
+ R K G Y+EGGN D + G++ YGGWGWDWTFS+VGDT NG G G
Sbjct: 37 ASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNGNGG 96
Query: 62 NSLEVGDGNG-GLAGGNG-------------GGGSGVSIHETGCGGG---------DSGG 121
+VG G G GG G G G+G S HE G G G GG
Sbjct: 97 GGCDVGGGGGDSEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGDGGIASSFDECGGGG 156
Query: 122 RGVSEHGVGVSSHVDGGGHSY--------GGGGTSSNDHGGG------GSGGGGFSDFGG 142
VS+ G G S H+DGG ++ GGGG +S DHGGG G GGGG+ GG
Sbjct: 157 GTVSDRGGGGSFHMDGGHSNFGGGVSSHGGGGGGASYDHGGGGGVSDYGGGGGGYDFGGG 216
BLAST of Pay0021067 vs. NCBI nr
Match:
XP_008450026.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KAA0045153.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa] >TYK23585.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa])
HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0
Query: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGSSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
MSKRKDKIGIYLEGGNTSTTDSNMFTG+SYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG
Sbjct: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
Query: 61 NGGLAGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGGHSYGGGGTSSNDH 120
NGG+ GGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD GGHSYGGGGTSSNDH
Sbjct: 61 NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYGGGGTSSNDH 120
Query: 121 GGGGSGGGGFSDFGGGGSSIW 142
GGGGSGGGGFSDFGGGGSSIW
Sbjct: 121 GGGGSGGGGFSDFGGGGSSIW 140
BLAST of Pay0021067 vs. NCBI nr
Match:
KAE8649549.1 (hypothetical protein Csa_018168, partial [Cucumis sativus])
HSP 1 Score: 150.2 bits (378), Expect = 1.3e-32
Identity = 81/98 (82.65%), Postives = 84/98 (85.71%), Query Frame = 0
Query: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGSSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
MS KDK GIY+EGGNTSTTDSNMF+GSSYGGWGWDWTFSTVGDTVNG G NSLEVGDG
Sbjct: 1 MSTGKDKNGIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTVGDTVNGGSGRNSLEVGDG 60
Query: 61 NGGLAGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVG 99
NGGL GG GGGGS SIHET CG GD GG GVS+HGVG
Sbjct: 61 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVG 98
BLAST of Pay0021067 vs. NCBI nr
Match:
KAG6595345.1 (hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 75.1 bits (183), Expect = 5.4e-10
Identity = 82/186 (44.09%), Postives = 95/186 (51.08%), Query Frame = 0
Query: 2 SKRKDKIGIYLEGGNT--STTDSNMFTGSS------YGGWGWDWTFSTVGDTVNGEG-GE 61
+ R K G Y+EGGN D + G++ YGGWGWDWTFS+VGDT NG G G
Sbjct: 37 ASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNGNGG 96
Query: 62 NSLEVGDGNG-GLAGGNG-------------GGGSGVSIHETGCGGG---------DSGG 121
+VG G G GG G G G+G S HE G GGG GG
Sbjct: 97 GGCDVGGGGGDSEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGGGGIASSFDECGGGG 156
Query: 122 RGVSEHGVGVSSHVDGGGHSY--------GGGGTSSNDHGGGG-----SGGGGFSDFGG- 142
VS+HG G S H+DGG ++ GGGG +S DHGGGG GGGG DFGG
Sbjct: 157 GTVSDHGGGGSFHMDGGHSNFGGGVSSHGGGGGGASYDHGGGGGVSDYGGGGGGYDFGGS 216
BLAST of Pay0021067 vs. NCBI nr
Match:
XP_022966633.1 (loricrin-like [Cucurbita maxima])
HSP 1 Score: 70.9 bits (172), Expect = 1.0e-08
Identity = 77/181 (42.54%), Postives = 91/181 (50.28%), Query Frame = 0
Query: 2 SKRKDKIGIYLEGGNT--STTDSNMFTGSS------YGGWGWDWTFSTVGDTVNGE---- 61
+ R K G Y+EGGN D + G++ YGGWGWDWTFS+VGDT NG
Sbjct: 17 ASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNDGGG 76
Query: 62 ----GGENSLEVGD-----GNGGLAGGNGGGGSGVSIHETGCGGG---------DSGGRG 121
GG EVG G G G G G+G S HE G G G GG
Sbjct: 77 CDVGGGGGDSEVGGRGSDVGRGDGVGCGNGDGNGASFHEAGGGDGGVASSFDECGGGGGT 136
Query: 122 VSEHGVGVSSHVDGGGHSYGGGGTS--------SNDHGGGG-------SGGGGFSDFGGG 138
VS+HG G S H+DGG ++GGG +S S+DHGGGG GGGG SD+GGG
Sbjct: 137 VSDHGGGGSFHMDGGHSNFGGGASSHGGGGDGASHDHGGGGGGASYDHGGGGGVSDYGGG 196
BLAST of Pay0021067 vs. NCBI nr
Match:
XP_022931867.1 (glycine-rich protein 23-like [Cucurbita moschata])
HSP 1 Score: 69.7 bits (169), Expect = 2.3e-08
Identity = 78/186 (41.94%), Postives = 92/186 (49.46%), Query Frame = 0
Query: 2 SKRKDKIGIYLEGGNT--STTDSNMFTGSS------YGGWGWDWTFSTVGDTVNGEG-GE 61
+ R K G Y+EGGN D + G++ YGGWGWDWTFS+VGDT NG G G
Sbjct: 37 ASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNGNGG 96
Query: 62 NSLEVGDGNG-GLAGGNG-------------GGGSGVSIHETGCGGG---------DSGG 121
+VG G G GG G G G+G S HE G G G GG
Sbjct: 97 GGCDVGGGGGDSEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGDGGIASSFDECGGGG 156
Query: 122 RGVSEHGVGVSSHVDGGGHSY--------GGGGTSSNDHGGG------GSGGGGFSDFGG 142
VS+ G G S H+DGG ++ GGGG +S DHGGG G GGGG+ GG
Sbjct: 157 GTVSDRGGGGSFHMDGGHSNFGGGVSSHGGGGGGASYDHGGGGGVSDYGGGGGGYDFGGG 216
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TNP5 | 6.6e-62 | 97.16 | Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O... | [more] |
| A0A1S3BNC1 | 6.6e-62 | 97.16 | glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... | [more] |
| A0A0A0KXB6 | 2.3e-46 | 70.76 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297450 PE=4 SV=1 | [more] |
| A0A6J1HSN5 | 4.9e-09 | 42.54 | loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1 | [more] |
| A0A6J1EUX9 | 1.1e-08 | 41.94 | glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008450026.1 | 1.4e-61 | 97.16 | PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KA... | [more] |
| KAE8649549.1 | 1.3e-32 | 82.65 | hypothetical protein Csa_018168, partial [Cucumis sativus] | [more] |
| KAG6595345.1 | 5.4e-10 | 44.09 | hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022966633.1 | 1.0e-08 | 42.54 | loricrin-like [Cucurbita maxima] | [more] |
| XP_022931867.1 | 2.3e-08 | 41.94 | glycine-rich protein 23-like [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
