Pay0020959 (gene) Melon (Payzawat) v1

Overview


Name	Pay0020959
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Single-stranded DNA-binding protein
Location	chr12: 26501748 .. 26503898 (+)
RNA-Seq Expression	Pay0020959
Synteny	Pay0020959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCCACGGTAGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATCACGACATCCTCCCCGTAACCTATTGTACTAATAACCTTTCCTTCCGCTCGGTATCAGATATCACTGAGTCCGGTATTGAATCGGACTTGTACTCGGAGTTGGACTCAAATTCGGTAACTAATCAACCTTCTTTCTCACCGTCCTCGTCCCAATCACCCACCCAATCGAGAAAGGTCTATGATCGACCTCTTGAAAATGGCCTCGATGCTGGCATTTTTAAGGTACGTTGGATGATGTATAGGTGCTTTGGGACTTTCGATTCTCGATGTTTTGTTGCTTATATTTTCATCTTATTGACATTTCGTGTTTGCTTGAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAACAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGGCCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTCAGAGACTGGGCAATATCGTCATGAAGCATGCTGTGCCTGGGTAAGCATTTCAGTCTTGATCATTTACCTGAGGTACATGGAGATAATATCATAGAAATTTGTTTGTATTCTTCCATCAGTTCTTAATAACGAGCTTATGTTTGATTAGTATAATGCTGGGAAGCTATATCGATTAATTTGAATTCCAAACTGTGCCCATTATTAACTTTGTAGCTACCGTTTTTTTCTGGTTCATGTTACCCCGTTGCCCACAAAAGACAATGTAGTAGTCTTAGTTTCCTCATTCTTTGTTGCAGCTTCATACTTACTGTGTAAATTTGTCCTTGTCAGTTCAATTATGTATTTGGAAGGAAACTTGGAGACCAAAATCTTCACCGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGTACAACACTTACCCTTTCCTTCTTTAAAGCGGTCTTTTGTGGTTTTTCTAATCATATGTTCTTTCAAACGGTTTCTTCTACAAGAGAAAATGGTACAACACTTGTTATGTTTTAGCACCCTGCTTATGAATATAGAGTTCCTCATGTATTATGGCTACTTAATTAAACTACATACCATTTGTGTCATCTTTAATAAAAAAAAATCGGCAAGTTTTGTTCTGAACTGTGACGAAGGTACAGCCTCTTTATGATGTGAATGTTCTTTCTTGGACGTGATATGTATTTTAATAATAAAAAAAAAGCGAATTTATTTTCTTCTGTAGGCTGAAAAACCTATATGGATTCGGACTGACTGGTGTTTGAATTATAATGTTGGGTCCTTGGTTTTTCCATTTGTTTTTTCATGGTCTGATCCTTTGTGAATCGGAGGAATTATAAAGAATTTGATTGCTTTTGTGCTGACTTGACATTCATGCATGTTGAAACAAATGGCCCTAGGATCACCACATATGACCTCCGTTGATAAAGTTTGGTTGTTATGTAGGACGGCTTGTATTTTTGGGGAAGGAAGAAGGTAATGCTCAGGAGTCCACCTCATCAGAACTCAGAGGTGTTGGCTATTACTAAGAGATGTTTGCAGTTTTGTCATCTGAAGATTTGAATCGCCCACTTTTCGATGTAAATGCTGTTATTTCACTTCACAGAGTTGCAATAAGGCATTCTGAAATCTATTGCATGGCCTAGCGATGATTCACTTCCCCCCACCCTCTGTCAAGCGACAAATGTCTTTGATATTTATACGATTTAAATGAATTCGATTGAGAGAGAATTAAAATCAGCTTCCTCATTGCAACTTATTGTTTTTCAACTTGGTAGACGGCTTGCTGGTTCTTTTGAGATGTTTATTTGCAGGGGTCATGGGCATAGTTATGGTTAGACAGAGTAAATGCTGTCTTTTTGTGAAACAAGCATCGGTACTTTCAAAGCGCAAGACAAACTTTGATGGGTTGCTAGAGGCACATGTGTGAGCAATGGAGCCACATAATGTATGAGTATGAGTTGGTAGATTGAAGATTGAAATTCAAATGCCATAATTGGGAATGATTGAGTTTCGTACATTGTGATGCCACAGATTTTTCAAT

mRNA sequence

ATGACCTCCACGGTAGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATCACGACATCCTCCCCGTAACCTATTGTACTAATAACCTTTCCTTCCGCTCGGTATCAGATATCACTGAGTCCGGTATTGAATCGGACTTGTACTCGGAGTTGGACTCAAATTCGGTAACTAATCAACCTTCTTTCTCACCGTCCTCGTCCCAATCACCCACCCAATCGAGAAAGGTCTATGATCGACCTCTTGAAAATGGCCTCGATGCTGGCATTTTTAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAACAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGGCCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTCAGAGACTGGGCAATATCGTCATGAAGCATGCTGTGCCTGGTTCAATTATGTATTTGGAAGGAAACTTGGAGACCAAAATCTTCACCGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGACGGCTTGTATTTTTGGGGAAGGAAGAAGGTAATGCTCAGGAGTCCACCTCATCAGAACTCAGAGGTGTTGGCTATTACTAAGAGATGTTTGCAGTTTTGTCATCTGAAGATTTGAATCGCCCACTTTTCGATGTAAATGCTGTTATTTCACTTCACAGAGTTGCAATAAGGCATTCTGAAATCTATTGCATGGCCTAGCGATGATTCACTTCCCCCCACCCTCTGTCAAGCGACAAATGTCTTTGATATTTATACGATTTAAATGAATTCGATTGAGAGAGAATTAAAATCAGCTTCCTCATTGCAACTTATTGTTTTTCAACTTGGTAGACGGCTTGCTGGTTCTTTTGAGATGTTTATTTGCAGGGGTCATGGGCATAGTTATGGTTAGACAGAGTAAATGCTGTCTTTTTGTGAAACAAGCATCGGTACTTTCAAAGCGCAAGACAAACTTTGATGGGTTGCTAGAGGCACATGTGTGAGCAATGGAGCCACATAATGTATGAGTATGAGTTGGTAGATTGAAGATTGAAATTCAAATGCCATAATTGGGAATGATTGAGTTTCGTACATTGTGATGCCACAGATTTTTCAAT

Coding sequence (CDS)

ATGACCTCCACGGTAGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATCACGACATCCTCCCCGTAACCTATTGTACTAATAACCTTTCCTTCCGCTCGGTATCAGATATCACTGAGTCCGGTATTGAATCGGACTTGTACTCGGAGTTGGACTCAAATTCGGTAACTAATCAACCTTCTTTCTCACCGTCCTCGTCCCAATCACCCACCCAATCGAGAAAGGTCTATGATCGACCTCTTGAAAATGGCCTCGATGCTGGCATTTTTAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAACAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGGCCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTCAGAGACTGGGCAATATCGTCATGAAGCATGCTGTGCCTGGTTCAATTATGTATTTGGAAGGAAACTTGGAGACCAAAATCTTCACCGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGACGGCTTGTATTTTTGGGGAAGGAAGAAGGTAATGCTCAGGAGTCCACCTCATCAGAACTCAGAGGTGTTGGCTATTACTAA

Protein sequence

MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDSNSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY

Homology

[Close]

BLAST of Pay0020959 vs. ExPASy Swiss-Prot
Match: Q84J78 (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-19
Identity = 52/164 (31.71%), Postives = 92/164 (56.10%), Query Frame = 0


Query: 47  ESGIESDLYSELDSNSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVG 106
           + G+E D        +VT +P   P               P +     G+ +AI+ GKVG
Sbjct: 38  DEGVEEDF-----EENVTERPELQPHGVD-----------PRKGWGFRGVHRAIICGKVG 97

Query: 107 QSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNI 166
           Q+PLQK L++GRTVT+ +VGTGG+ + R   A  +P+        QWHR++++ + LG+ 
Sbjct: 98  QAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQWHRIAVHNEVLGSY 157

Query: 167 VMKHAVPGSIMYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRL 211
            ++     S +Y+EG++ET+++ D ++  V+ I E+ +R +G++
Sbjct: 158 AVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKI 179

[Close]

BLAST of Pay0020959 vs. ExPASy Swiss-Prot
Match: P57610 (Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=ssb PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-09
Identity = 39/138 (28.26%), Postives = 68/138 (49.28%), Query Frame = 0


Query: 95  GIFKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 154
           G+ K IL+G +GQ P  + + +G  V  +++ T     ++    N+E  E        WH
Sbjct: 5   GVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTE--------WH 64

Query: 155 RVSIYPQRLGNIVMKHAVPGSIMYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLG 214
           R+ ++  +L  I  ++   GS +Y+EG+L+T+ + DQ  GL R   E+ +   G +  LG
Sbjct: 65  RIVLF-GKLAEIAGEYLRKGSQVYIEGSLQTRKWQDQ-NGLERYTTEIIVNIGGTMQMLG 124

Query: 215 KEEGNAQESTSSELRGVG 233
               N Q  T ++    G
Sbjct: 125 NRNSNLQAMTVNDKNSTG 132

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BLAST of Pay0020959 vs. ExPASy Swiss-Prot
Match: Q8D254 (Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX=36870 GN=ssb PE=3 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-09
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 95  GIFKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 154
           GI K IL+G +GQ P  + + +G  +T LS+ T     N R     E +E       +WH
Sbjct: 5   GINKVILIGNLGQDPEVRYIPNGNAITNLSLATS---ENWRDKNTGESKE-----KTEWH 64

Query: 155 RVSIYPQRLGNIVMKHAVPGSIMYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLG 214
           RV ++  +L  +  ++   GS +Y+EGNL+T+ + DQ  G  R I E+ +  NG +  LG
Sbjct: 65  RVILF-GKLAEVAGEYLKKGSQVYIEGNLQTRKWQDQ-NGQDRYITEIVVGINGCMQMLG 114

[Close]

BLAST of Pay0020959 vs. ExPASy Swiss-Prot
Match: Q8DCJ0 (Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=ssb PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-09
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 0


Query: 95  GIFKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 154
           GI K ILVG +G  P  + + SG  V  ++V T       R  A  EPRE       +WH
Sbjct: 5   GINKVILVGNLGNDPEIRYMPSGGAVANITVATS---ETWRDKATGEPRE-----KTEWH 64

Query: 155 RVSIYPQRLGNIVMKHAVPGSIMYLEGNLETKIFTDQVTGLVRRIREVAIRG-NGRLVFL 214
           RV++Y  +L  +  ++   GS +Y+EG L+T+ + DQ  G  R   EV ++G NG +  L
Sbjct: 65  RVTLY-GKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQ-NGQDRYSTEVVVQGYNGIMQML 123

Query: 215 G--KEEGNA 221
           G  +++G A
Sbjct: 125 GGRQQQGGA 123

[Close]

BLAST of Pay0020959 vs. ExPASy Swiss-Prot
Match: Q8K933 (Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=ssb PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-09
Identity = 39/133 (29.32%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 95  GIFKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 154
           G+ K IL+G +GQ P  + + +G  V  +++ T     ++    N+E  E        WH
Sbjct: 5   GVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTE--------WH 64

Query: 155 RVSIYPQRLGNIVMKHAVPGSIMYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLG 214
           R+ ++  +L  I  ++   GS +Y+EG+L+T+ + DQ  GL R   EV +   G +  LG
Sbjct: 65  RIVLF-GKLAEIAGEYLRKGSQVYIEGSLQTRKWQDQ-NGLERYTTEVIVNIGGTMQMLG 124

Query: 215 KEEGNAQESTSSE 228
               N+   T +E
Sbjct: 125 NRNSNSHNVTLNE 127

[Close]

BLAST of Pay0020959 vs. ExPASy TrEMBL
Match: A0A1S3C3D2 (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495996 PE=4 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.1e-125
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60
           MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 235
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 234

[Close]

BLAST of Pay0020959 vs. ExPASy TrEMBL
Match: A0A5D3BKT6 (Single-stranded DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001780 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.2e-123
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60
           MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGV 232
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGV
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGV 231

[Close]

BLAST of Pay0020959 vs. ExPASy TrEMBL
Match: A0A0A0LTL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.1e-117
Identity = 220/234 (94.02%), Postives = 225/234 (96.15%), Query Frame = 0


Query: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60
           MTS VALSRRLCRSLLSNSKASHH+DILPVTYCTNNLSFRSVSDITESGIESDLY+ELDS
Sbjct: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60

Query: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPS SPSSSQSPTQ R VY+RPLENGLDAGI+KAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 235
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGK EGNAQEST SE RGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234

[Close]

BLAST of Pay0020959 vs. ExPASy TrEMBL
Match: A0A6J1KGM8 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495086 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.5e-99
Identity = 189/234 (80.77%), Postives = 209/234 (89.32%), Query Frame = 0


Query: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60
           MTS   LSRRL RS LSNSKASHHHDILPV Y + NLSFRSVSDI ES I+SD+  +L S
Sbjct: 1   MTSMAVLSRRLFRSFLSNSKASHHHDILPVIYSSKNLSFRSVSDIGESSIDSDM--DLGS 60

Query: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120
           +SV+N+PS SPSSSQS +Q+R +Y+RPLENGLDAGI+KAILVG+VGQSPLQKQLKSGRTV
Sbjct: 61  HSVSNRPSLSPSSSQSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLG++VMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 235
           GNLETKIFTD  TGLVRRIREVAIR +GRLVFLGK EG+ Q+ST  E +GVGYY
Sbjct: 181 GNLETKIFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQLEFKGVGYY 232

[Close]

BLAST of Pay0020959 vs. ExPASy TrEMBL
Match: A0A6J1C717 (single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008995 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.1e-98
Identity = 188/234 (80.34%), Postives = 208/234 (88.89%), Query Frame = 0


Query: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60
           MTS  ALSR+LCRSLLSNS+ASHH + L +TYCTNN SFRS S+I +S I+SD+ S  DS
Sbjct: 1   MTSMAALSRKLCRSLLSNSRASHHPEFLSMTYCTNNSSFRSGSEIGDSSIDSDMDS--DS 60

Query: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120
           +SVTN+PS SPSSSQS TQ+R +Y+RPLENGLDAGI+KAILVG+ GQSPLQKQLKSGRTV
Sbjct: 61  HSVTNRPSVSPSSSQSSTQTRMIYNRPLENGLDAGIYKAILVGQAGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVS+YPQRLG IVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGEIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 235
           GNLETKIFTD +TGLVRRIREVAIR NGRLVFLG   GN Q+ST SE +GVGYY
Sbjct: 181 GNLETKIFTDPITGLVRRIREVAIRRNGRLVFLGDGGGNVQQSTQSEFKGVGYY 232

[Close]

BLAST of Pay0020959 vs. NCBI nr
Match: XP_008455960.1 (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo])

HSP 1 Score: 459.1 bits (1180), Expect = 2.2e-125
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60
           MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 235
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 234

[Close]

BLAST of Pay0020959 vs. NCBI nr
Match: TYJ98975.1 (single-stranded DNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 451.4 bits (1160), Expect = 4.6e-123
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60
           MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGV 232
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGV
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGV 231

[Close]

BLAST of Pay0020959 vs. NCBI nr
Match: XP_011650431.1 (single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >XP_031745512.1 single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >KGN64102.1 hypothetical protein Csa_013261 [Cucumis sativus])

HSP 1 Score: 432.6 bits (1111), Expect = 2.2e-117
Identity = 220/234 (94.02%), Postives = 225/234 (96.15%), Query Frame = 0


Query: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60
           MTS VALSRRLCRSLLSNSKASHH+DILPVTYCTNNLSFRSVSDITESGIESDLY+ELDS
Sbjct: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60

Query: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPS SPSSSQSPTQ R VY+RPLENGLDAGI+KAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 235
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGK EGNAQEST SE RGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234

[Close]

BLAST of Pay0020959 vs. NCBI nr
Match: XP_038895598.1 (single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038895599.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 387.1 bits (993), Expect = 1.1e-103
Identity = 200/234 (85.47%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60
           MTS  ALSRRLCRSLLSNSKASHHH+ILPVT CTNNLSFRSVSDITES IESDL S  DS
Sbjct: 1   MTSMAALSRRLCRSLLSNSKASHHHNILPVTSCTNNLSFRSVSDITESSIESDLDS--DS 60

Query: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120
           +SVTN PS SPSSSQS TQSR +Y+RPLENGLDAG++KAILVG+VGQSPLQK+LKSG TV
Sbjct: 61  HSVTNPPSLSPSSSQSSTQSRTIYNRPLENGLDAGVYKAILVGQVGQSPLQKRLKSGITV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVS+YPQRLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 235
           GNLETKIFTD  TGLVR IREVAIR NGRLVFLGK E N Q+ST SE +GVGYY
Sbjct: 181 GNLETKIFTDPTTGLVRSIREVAIRRNGRLVFLGKGEVNGQQSTPSEFKGVGYY 232

[Close]

BLAST of Pay0020959 vs. NCBI nr
Match: XP_038893715.1 (single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893716.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893717.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893718.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 383.6 bits (984), Expect = 1.2e-102
Identity = 197/234 (84.19%), Postives = 213/234 (91.03%), Query Frame = 0


Query: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60
           MTS  ALSRRLCRSLLSNSKASHHH+ILPVTYCTNNLSFRSVSDITES IES+L S  DS
Sbjct: 1   MTSMAALSRRLCRSLLSNSKASHHHNILPVTYCTNNLSFRSVSDITESSIESNLDS--DS 60

Query: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120
           +SVTN PS SPSSSQS T SR +Y+RPLENGLDAG++KAILVG+VGQSPLQK+LKSG TV
Sbjct: 61  HSVTNPPSLSPSSSQSSTLSRTIYNRPLENGLDAGVYKAILVGQVGQSPLQKRLKSGITV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVS+YPQRLG+IVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGDIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 235
           GNLETKIF D  TGLVRRIREVAIR NGRL+ LGK EG+AQ+ST SE +GVGYY
Sbjct: 181 GNLETKIFIDPTTGLVRRIREVAIRRNGRLLLLGKGEGDAQQSTPSEFKGVGYY 232

[Close]

BLAST of Pay0020959 vs. TAIR 10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 262.7 bits (670), Expect = 2.8e-70
Identity = 143/232 (61.64%), Postives = 175/232 (75.43%), Query Frame = 0


Query: 3   STVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDSNS 62
           S   LSRRL RSLLSN + S       +++CTNN++    SD  E  +ES +        
Sbjct: 4   SMATLSRRLYRSLLSNPRISQ----ASMSFCTNNITSPEDSDFDE--LESPI-------- 63

Query: 63  VTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTVTL 122
              +P  S   S+   + R + +RPLENGLD+GIFKAILVG+VGQ PLQK+LKSGRTVTL
Sbjct: 64  ---EPKASDPVSRFSGEERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTL 123

Query: 123 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLEGN 182
            SVGTGGIRNNRRPL NE+PREYA+R AVQWHRVS+YP+RL ++V+K+  PG+++YLEGN
Sbjct: 124 FSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGN 183

Query: 183 LETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 235
           LETKIFTD VTGLVRRIREVAIR NGR+VFLGK  G+ Q+ +S+ELRGVGYY
Sbjct: 184 LETKIFTDPVTGLVRRIREVAIRRNGRVVFLGK-AGDMQQPSSAELRGVGYY 217

[Close]

BLAST of Pay0020959 vs. TAIR 10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-20
Identity = 52/164 (31.71%), Postives = 92/164 (56.10%), Query Frame = 0


Query: 47  ESGIESDLYSELDSNSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVG 106
           + G+E D        +VT +P   P               P +     G+ +AI+ GKVG
Sbjct: 38  DEGVEEDF-----EENVTERPELQPHGVD-----------PRKGWGFRGVHRAIICGKVG 97

Query: 107 QSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNI 166
           Q+PLQK L++GRTVT+ +VGTGG+ + R   A  +P+        QWHR++++ + LG+ 
Sbjct: 98  QAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQWHRIAVHNEVLGSY 157

Query: 167 VMKHAVPGSIMYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRL 211
            ++     S +Y+EG++ET+++ D ++  V+ I E+ +R +G++
Sbjct: 158 AVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKI 179

The following BLAST results are available for this feature:

BLAST of Pay0020959 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J78	1.7e-19	31.71	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P57610	2.1e-09	28.26	Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon ...	[more]
Q8D254	2.7e-09	34.17	Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX...	[more]
Q8DCJ0	3.5e-09	35.66	Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain CMCP6) OX=21689...	[more]
Q8K933	4.6e-09	29.32	Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Schizaphis gra...	[more]

BLAST of Pay0020959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C3D2	1.1e-125	100.00	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5D3BKT6	2.2e-123	100.00	Single-stranded DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0LTL6	1.1e-117	94.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1	[more]
A0A6J1KGM8	6.5e-99	80.77	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1C717	1.1e-98	80.34	single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=367...	[more]

BLAST of Pay0020959 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455960.1	2.2e-125	100.00	PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo]	[more]
TYJ98975.1	4.6e-123	100.00	single-stranded DNA-binding protein [Cucumis melo var. makuwa]	[more]
XP_011650431.1	2.2e-117	94.02	single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >XP_0317455...	[more]
XP_038895598.1	1.1e-103	85.47	single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_...	[more]
XP_038893715.1	1.2e-102	84.19	single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_...	[more]

BLAST of Pay0020959 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18580.1	2.8e-70	61.64	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G11060.1	1.2e-20	31.71	mitochondrially targeted single-stranded DNA binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 97..205 e-value: 2.0E-18 score: 66.3
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 96..211 score: 12.132835
IPR000424	Primosome PriB/single-strand DNA-binding	CDD	cd04496	SSB_OBF	coord: 100..205 e-value: 1.18233E-11 score: 57.6222
None	No IPR available	GENE3D	2.40.50.140		coord: 96..213 e-value: 2.0E-16 score: 61.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..82
None	No IPR available	PANTHER	PTHR10302:SF16	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 2..234
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 2..234
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 95..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0020959.1	Pay0020959.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006264	mitochondrial DNA replication
biological_process	GO:0051096	positive regulation of helicase activity
biological_process	GO:0006260	DNA replication
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0003697	single-stranded DNA binding