Pay0020949 (gene) Melon (Payzawat) v1

Overview
NamePay0020949
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionUnknown protein
Locationchr08: 10590088 .. 10591002 (-)
RNA-Seq ExpressionPay0020949
SyntenyPay0020949
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAAAAAGGAGGCGATGGATGTGGAAGAAACAGAGTGGGGAAATTGGGATTGATAAAAGGGGTTGGGGTTGTGGGATTTTTGGGCACTGCATTGGGGTTGAGGAATTTCTTCTTCTTTTATACTGGTCAAAGGGGAGCGGGAGGGCTCTCTTTCTGAATTTTGCCGGTGACCCAACTGGTTTCTCTCGCGCTCCCATTCTCCTGTTTGTCTCCCTGAATGCCTTAGCCAGTGTTCAGGGTAATTTCACTCTTCTACTTCCCACCATTTTCGTTTCCTGCTCAATCTGCACCAACCTCATCAATGATTAATACTTCTGACTTTAATTTTTCTCTTTTTCGTTTTTGTTTGGTTATTGGGTGGTTAGATCGGAGAACGGTTTGTTGTTCTGTTTACTATGAATCTATTGAATGATTAACGTTTGGTTATTGGGTGCTTAGATTGAAGAATGGTTTGGCATATGAATCCCATGAATGGTTAATAGTTATGGTTTTGATTCTCTTTTTGGTTTTTGTATGATTATTCGGTTCTTAGATGGAATAACAGTTTGCTTTTTCTGTTTGGTTCCTTCTAGAATAAATGAGTGTAATCGACGGTTGAATCGTTTGAAAAAGCGAAATGTAGATTTTGGAAGTCATATTATGGTTTTTGTTTTTGTATATTCATTAATGTATCTCTCTTTTGGGTTTCTATGTAGATGGAAGTACAGTTTATTTTCTTTTTGTTTCCCGGAAAATGTGTATGAGTCTGTGATTCTTTTTTCTATTATTTTGGTTTCAGATCATTCTGGTGACTTAACTGCAAAGGGGCGTGGGATTAATAGGTTTGTTAATATCACTAGAGAATCTTTTTCTTGATTTTCATTACATGATATTTAGATTTTCTGATTTTAACTTCTCTACAGGTTGTGA

mRNA sequence

ATGGCCAAAAAAAGGAGGCGATGGATGTGGAAGAAACAGAGTGGGGAAATTGGGATTGATAAAAGGGGTTGGGGTTGTGGGATTTTTGGGCACTGCATTGGGGTTGAGGAATTTCTTCTTCTTTTATACTGGTCAAAGGGGAGCGGGAGGGCTCTCTTTCTGAATTTTGCCGGTGACCCAACTGGTTTCTCTCGCGCTCCCATTCTCCTGTTTGTCTCCCTGAATGCCTTAGCCAGTGTTCAGGATCATTCTGGTGACTTAACTGCAAAGGGGCGTGGGATTAATAGGTTGTGA

Coding sequence (CDS)

ATGGCCAAAAAAAGGAGGCGATGGATGTGGAAGAAACAGAGTGGGGAAATTGGGATTGATAAAAGGGGTTGGGGTTGTGGGATTTTTGGGCACTGCATTGGGGTTGAGGAATTTCTTCTTCTTTTATACTGGTCAAAGGGGAGCGGGAGGGCTCTCTTTCTGAATTTTGCCGGTGACCCAACTGGTTTCTCTCGCGCTCCCATTCTCCTGTTTGTCTCCCTGAATGCCTTAGCCAGTGTTCAGGATCATTCTGGTGACTTAACTGCAAAGGGGCGTGGGATTAATAGGTTGTGA

Protein sequence

MAKKRRRWMWKKQSGEIGIDKRGWGCGIFGHCIGVEEFLLLLYWSKGSGRALFLNFAGDPTGFSRAPILLFVSLNALASVQDHSGDLTAKGRGINRL
Homology
[Close]
BLAST of Pay0020949 vs. NCBI nr
Match: KAE8649662.1 (hypothetical protein Csa_012315 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 9.4e-30
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 28 IFGHCIGVEEFLLLLYWSKGSGRALFLNFAGDPTGFSRAPILLFVSLNALASVQDHSGDL 87
          IFGHCIGVEEFLLLLYWSKGSGRALFLNFAGDPTGFSRAPILLFVSLNAL SVQDHSGDL
Sbjct: 9  IFGHCIGVEEFLLLLYWSKGSGRALFLNFAGDPTGFSRAPILLFVSLNALTSVQDHSGDL 68

Query: 88 TAKGRGINR 97
           AKGRGINR
Sbjct: 69 IAKGRGINR 77

[Close]
BLAST of Pay0020949 vs. NCBI nr
Match: KAG6595436.1 (hypothetical protein SDJN03_11989, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 47 GSGRALFLNFAGDPTGFSRAPILLFVSLNALASVQDHSGDLTAKGRGINRL 98
          GSGRALFLNFAGDPTGFSRAPILLFVSLNAL SVQ+HSGDL AKGRGINRL
Sbjct: 25 GSGRALFLNFAGDPTGFSRAPILLFVSLNALISVQEHSGDLNAKGRGINRL 75

The following BLAST results are available for this feature:
BLAST of Pay0020949 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0020949 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0020949 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649662.19.4e-3097.10hypothetical protein Csa_012315 [Cucumis sativus][more]
KAG6595436.13.1e-1794.12hypothetical protein SDJN03_11989, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Pay0020949 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0020949.1Pay0020949.1mRNA