Pay0020938 (gene) Melon (Payzawat) v1

Overview


Name	Pay0020938
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Location	chr10: 13003059 .. 13003475 (-)
RNA-Seq Expression	Pay0020938
Synteny	Pay0020938

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGCGTAAGGATCTCGAGTTTCATGTGTGACATGGTTTTTCTGAAGATAACACATATGAAGGATGTTTTGAGGTTTGAGAAGAAAGGGAAGCTAAGTCCACGTTTTGTAAGGTCGTTTGAGATACTTGAGCGGATTGGCCCCGTGGCTTACCGTTTGACGTTGTCTTCAGCGTTTTCTGCAGTACATGACGTACTCCATGTTTCTATGCTGAGGAAGTATGTCGCAGACTCAACACATGTAGTTGACTTTGAGCCATTGCACATCAATGAGAACTTGGCCTATGAGAAGCAACCGGTCGAGATTTTGGCGAGAGAGGTCAAGATGCTTCGTAATACGGGGATTGCGCTCGTCAAAGTTCTTTGGCGAAACCACGAAGTTGAAGAGCCACATGGAAGAGAGAGTATGACTTGA

mRNA sequence

ATGAATGGCGTAAGGATCTCGAGTTTCATGTGTGACATGGTTTTTCTGAAGATAACACATATGAAGGATGTTTTGAGGTTTGAGAAGAAAGGGAAGCTAAGTCCACGTTTTGTAAGGTCGTTTGAGATACTTGAGCGGATTGGCCCCGTGGCTTACCGTTTGACGTTGTCTTCAGCGTTTTCTGCAGTACATGACGTACTCCATGTTTCTATGCTGAGGAAGTATGTCGCAGACTCAACACATGTAGTTGACTTTGAGCCATTGCACATCAATGAGAACTTGGCCTATGAGAAGCAACCGGTCGAGATTTTGGCGAGAGAGGTCAAGATGCTTCGTAATACGGGGATTGCGCTCGTCAAAGTTCTTTGGCGAAACCACGAAGTTGAAGAGCCACATGGAAGAGAGAGTATGACTTGA

Coding sequence (CDS)

ATGAATGGCGTAAGGATCTCGAGTTTCATGTGTGACATGGTTTTTCTGAAGATAACACATATGAAGGATGTTTTGAGGTTTGAGAAGAAAGGGAAGCTAAGTCCACGTTTTGTAAGGTCGTTTGAGATACTTGAGCGGATTGGCCCCGTGGCTTACCGTTTGACGTTGTCTTCAGCGTTTTCTGCAGTACATGACGTACTCCATGTTTCTATGCTGAGGAAGTATGTCGCAGACTCAACACATGTAGTTGACTTTGAGCCATTGCACATCAATGAGAACTTGGCCTATGAGAAGCAACCGGTCGAGATTTTGGCGAGAGAGGTCAAGATGCTTCGTAATACGGGGATTGCGCTCGTCAAAGTTCTTTGGCGAAACCACGAAGTTGAAGAGCCACATGGAAGAGAGAGTATGACTTGA

Protein sequence

MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAFSAVHDVLHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVKVLWRNHEVEEPHGRESMT

Homology

[Close]

BLAST of Pay0020938 vs. ExPASy TrEMBL
Match: A0A1S4E1C8 (uncharacterized protein LOC107991506 OS=Cucumis melo OX=3656 GN=LOC107991506 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.3e-70
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF 60
           MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF
Sbjct: 1   MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF 60

Query: 61  SAVHDVLHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK 120
           SAVHD+LHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK
Sbjct: 61  SAVHDILHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK 120

Query: 121 VLWRNHEVEEPHGRESMT 139
           VLWRNHEVEEPHGRESMT
Sbjct: 121 VLWRNHEVEEPHGRESMT 138

[Close]

BLAST of Pay0020938 vs. ExPASy TrEMBL
Match: A0A5D3DFQ8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00310 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.3e-69
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF 60
           MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF
Sbjct: 1   MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF 60

Query: 61  SAVHDVLHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK 120
           SAVHD+LHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK
Sbjct: 61  SAVHDILHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK 120

Query: 121 VLWRNHEVEEPHGRE 136
           VLWRNHEVEEPHGRE
Sbjct: 121 VLWRNHEVEEPHGRE 135

[Close]

BLAST of Pay0020938 vs. ExPASy TrEMBL
Match: A0A5A7U220 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00690 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.0e-46
Identity = 100/119 (84.03%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 12  DMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAFSAVHDVLHVSM 71
           DMVFLK+  MKDVLRF+KKGKLSPRFV SFEILERIGPVAYRL L  AFS VHDV HVSM
Sbjct: 199 DMVFLKVAPMKDVLRFKKKGKLSPRFVGSFEILERIGPVAYRLALPPAFSTVHDVFHVSM 258

Query: 72  LRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVKVLWRNHEVEE 131
           LRKYVAD THVVDFEPL INENL+YE++PVEILAREVKMLRN  IALVKVLWRNH V E
Sbjct: 259 LRKYVADPTHVVDFEPLQINENLSYEERPVEILAREVKMLRNREIALVKVLWRNHGVGE 317

[Close]

BLAST of Pay0020938 vs. ExPASy TrEMBL
Match: A0A5A7T5R3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00620 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.3e-46
Identity = 98/119 (82.35%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 12  DMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAFSAVHDVLHVSM 71
           DMVFLK+  MK VLRFEKKGKLSPRFV  F+ILERIGPVAYRL L  +FSAVHDV HVS+
Sbjct: 286 DMVFLKVAPMKSVLRFEKKGKLSPRFVGPFKILERIGPVAYRLALPPSFSAVHDVFHVSI 345

Query: 72  LRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVKVLWRNHEVEE 131
           LR+YVAD THVVDFEPL INENL+YE+QPVEILAREVKMLRN GIALVKVLWRNH VE+
Sbjct: 346 LRRYVADPTHVVDFEPLQINENLSYEEQPVEILAREVKMLRNRGIALVKVLWRNHGVED 404

[Close]

BLAST of Pay0020938 vs. ExPASy TrEMBL
Match: A0A5A7SQD9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00270 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.8e-46
Identity = 98/130 (75.38%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 1   MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF 60
           MNG+ I S M +   LK+  MK+ LRFEKKGKLSP F+ SFEILERI P+AYRL LS  F
Sbjct: 3   MNGISILSLMWETWCLKVVPMKNFLRFEKKGKLSPHFIESFEILERIDPIAYRLALSLTF 62

Query: 61  SAVHDVLHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK 120
           S VHDV HVSMLRKYV DSTHVVDFEPLHINENL+YE+Q VEILAREVKMLRN GIALVK
Sbjct: 63  SVVHDVFHVSMLRKYVVDSTHVVDFEPLHINENLSYEEQLVEILAREVKMLRNRGIALVK 122

Query: 121 VLWRNHEVEE 131
           VLWRNH  E+
Sbjct: 123 VLWRNHGAEK 132

[Close]

BLAST of Pay0020938 vs. NCBI nr
Match: XP_016902031.1 (PREDICTED: uncharacterized protein LOC107991506 [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 2.7e-70
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF 60
           MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF
Sbjct: 1   MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF 60

Query: 61  SAVHDVLHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK 120
           SAVHD+LHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK
Sbjct: 61  SAVHDILHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK 120

Query: 121 VLWRNHEVEEPHGRESMT 139
           VLWRNHEVEEPHGRESMT
Sbjct: 121 VLWRNHEVEEPHGRESMT 138

[Close]

BLAST of Pay0020938 vs. NCBI nr
Match: KAA0067510.1 (pol protein [Cucumis melo var. makuwa] >TYK22434.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 269.2 bits (687), Expect = 1.9e-68
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF 60
           MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF
Sbjct: 1   MNGVRISSFMCDMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAF 60

Query: 61  SAVHDVLHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK 120
           SAVHD+LHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK
Sbjct: 61  SAVHDILHVSMLRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVK 120

Query: 121 VLWRNHEVEEPHGRE 136
           VLWRNHEVEEPHGRE
Sbjct: 121 VLWRNHEVEEPHGRE 135

[Close]

BLAST of Pay0020938 vs. NCBI nr
Match: KAA0047631.1 (pol protein [Cucumis melo var. makuwa] >TYK08289.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-46
Identity = 100/119 (84.03%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 12  DMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAFSAVHDVLHVSM 71
           DMVFLK+  MKDVLRF+KKGKLSPRFV SFEILERIGPVAYRL L  AFS VHDV HVSM
Sbjct: 199 DMVFLKVAPMKDVLRFKKKGKLSPRFVGSFEILERIGPVAYRLALPPAFSTVHDVFHVSM 258

Query: 72  LRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVKVLWRNHEVEE 131
           LRKYVAD THVVDFEPL INENL+YE++PVEILAREVKMLRN  IALVKVLWRNH V E
Sbjct: 259 LRKYVADPTHVVDFEPLQINENLSYEERPVEILAREVKMLRNREIALVKVLWRNHGVGE 317

[Close]

BLAST of Pay0020938 vs. NCBI nr
Match: KAA0037486.1 (pol protein [Cucumis melo var. makuwa] >TYK01962.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-46
Identity = 98/119 (82.35%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 12  DMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAFSAVHDVLHVSM 71
           DMVFLK+  MK VLRFEKKGKLSPRFV  F+ILERIGPVAYRL L  +FSAVHDV HVS+
Sbjct: 286 DMVFLKVAPMKSVLRFEKKGKLSPRFVGPFKILERIGPVAYRLALPPSFSAVHDVFHVSI 345

Query: 72  LRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVKVLWRNHEVEE 131
           LR+YVAD THVVDFEPL INENL+YE+QPVEILAREVKMLRN GIALVKVLWRNH VE+
Sbjct: 346 LRRYVADPTHVVDFEPLQINENLSYEEQPVEILAREVKMLRNRGIALVKVLWRNHGVED 404

[Close]

BLAST of Pay0020938 vs. NCBI nr
Match: KAA0045487.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 7.8e-46
Identity = 97/119 (81.51%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 12  DMVFLKITHMKDVLRFEKKGKLSPRFVRSFEILERIGPVAYRLTLSSAFSAVHDVLHVSM 71
           DMVFLK+  MK VLRFEKKGKLSPRFV  FEILER GPVAYRL L  + S VHDV HVSM
Sbjct: 253 DMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERTGPVAYRLVLPPSLSIVHDVFHVSM 312

Query: 72  LRKYVADSTHVVDFEPLHINENLAYEKQPVEILAREVKMLRNTGIALVKVLWRNHEVEE 131
           LRKYVADSTHVVDFEPL INENL+YE+QP+EILAREVK+LRN GI+LVKVLWRNH VEE
Sbjct: 313 LRKYVADSTHVVDFEPLQINENLSYEEQPIEILAREVKVLRNQGISLVKVLWRNHRVEE 371

The following BLAST results are available for this feature:

BLAST of Pay0020938 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0020938 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1C8	1.3e-70	99.28	uncharacterized protein LOC107991506 OS=Cucumis melo OX=3656 GN=LOC107991506 PE=...	[more]
A0A5D3DFQ8	9.3e-69	99.26	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00310 PE...	[more]
A0A5A7U220	1.0e-46	84.03	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00690 PE...	[more]
A0A5A7T5R3	1.3e-46	82.35	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00620 PE...	[more]
A0A5A7SQD9	3.8e-46	75.38	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00270 PE...	[more]

BLAST of Pay0020938 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902031.1	2.7e-70	99.28	PREDICTED: uncharacterized protein LOC107991506 [Cucumis melo]	[more]
KAA0067510.1	1.9e-68	99.26	pol protein [Cucumis melo var. makuwa] >TYK22434.1 pol protein [Cucumis melo var...	[more]
KAA0047631.1	2.1e-46	84.03	pol protein [Cucumis melo var. makuwa] >TYK08289.1 pol protein [Cucumis melo var...	[more]
KAA0037486.1	2.7e-46	82.35	pol protein [Cucumis melo var. makuwa] >TYK01962.1 pol protein [Cucumis melo var...	[more]
KAA0045487.1	7.8e-46	81.51	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0020938 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 12..128
None	No IPR available	PANTHER	PTHR46148:SF21	DOMAIN PROTEIN, PUTATIVE-RELATED	coord: 12..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0020938.1	Pay0020938.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding