Pay0020920 (gene) Melon (Payzawat) v1

Overview


Name	Pay0020920
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty1-copia retrotransposon protein
Location	chr07: 20535274 .. 20536212 (-)
RNA-Seq Expression	Pay0020920
Synteny	Pay0020920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTCTCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGACAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCCGACACGTGTGTCTATTCAAAGATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACTTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTCAACCCGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCGTTTGTTAAGATATCTTAAAGGGACGATAGATTACTGTCTACACTTCAACAAATTTCCTACCATACTAGAAGGATATTGTGATGCAAACTGGGTCATAGATAATGATGAGGTTAACTCTACTTGTGGGTATGTTTTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAGCAGACTTGTATAGCCAGATCCACAATGGAATCCGAGTTCATAGCATTAGAGTTGGCAGGACAGGAGGTTGTGTGGATAAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCGGAGTCCATACAGTGTGATTCGTAA

mRNA sequence

ATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTCTCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGACAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCCGACACGTGTGTCTATTCAAAGATGTTAATAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACTTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTCAACCCGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCGTTTGTTAAGATATCTTAAAGGGACGATAGATTACTGTCTACACTTCAACAAATTTCCTACCATACTAGAAGGATATTGTGATGCAAACTGGGTCATAGATAATGATGAGGTTAACTCTACTTGTGGGTATGTTTTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAGCAGACTTGTATAGCCAGATCCACAATGGAATCCGAGTTCATAGCATTAGAGTTGGCAGGACAGGAGGTTGTGTGGATAAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCGGAGTCCATACAGTGTGATTCGTAA

Coding sequence (CDS)

ATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTCTCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGACAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCCGACACGTGTGTCTATTCAAAGATGTTAATAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACTTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTCAACCCGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCGTTTGTTAAGATATCTTAAAGGGACGATAGATTACTGTCTACACTTCAACAAATTTCCTACCATACTAGAAGGATATTGTGATGCAAACTGGGTCATAGATAATGATGAGGTTAACTCTACTTGTGGGTATGTTTTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAGCAGACTTGTATAGCCAGATCCACAATGGAATCCGAGTTCATAGCATTAGAGTTGGCAGGACAGGAGGTTGTGTGGATAAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCGGAGTCCATACAGTGTGATTCGTAA

Protein sequence

MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVYSKMLITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS

Homology

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BLAST of Pay0020920 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.8e-61
Identity = 131/310 (42.26%), Postives = 181/310 (58.39%), Query Frame = 0


Query: 1    MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVY---- 60
            M QPEGF+++G+++ VCKL KSLYGLKQAP+QWY KF++ + +  +    SD CVY    
Sbjct: 938  MEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRF 997

Query: 61   --------------------SKMLITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTS-- 120
                                 K LI   K  LS  F+MKDLG A  ILG+KI + +TS  
Sbjct: 998  SENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRK 1057

Query: 121  LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKK--------NKGDSVSQPEYAKIIG 180
            L L Q  Y+E++L++F+  +  PV TP      L K         KG+    P Y+  +G
Sbjct: 1058 LWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVP-YSSAVG 1117

Query: 181  SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILE 240
            S+MY M  TRPDIA+AV  +SR+  NP + HW+A++ +LRYL+GT   CL F     IL+
Sbjct: 1118 SLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILK 1177

Query: 241  GYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVW 277
            GY DA+   D D   S+ GY+F   GGAISW+S  Q C+A ST E+E+IA    G+E++W
Sbjct: 1178 GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIW 1237

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BLAST of Pay0020920 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 8.7e-50
Identity = 119/314 (37.90%), Postives = 169/314 (53.82%), Query Frame = 0


Query: 1    MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVY---- 60
            M+QP GF    + N VCKLRK+LYGLKQAP+ WY +  N L+T GF  + SDT ++    
Sbjct: 1081 MSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQR 1140

Query: 61   -------------------SKMLITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSL 120
                                  L+ +T   LS  F +KD  E    LG++ ++  T L L
Sbjct: 1141 GKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHL 1200

Query: 121  CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQP-EYAKIIGSVMYLMNYTR 180
             Q  Y+  +L + +     PV TP   S  L    G  ++ P EY  I+GS+ YL  +TR
Sbjct: 1201 SQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLA-FTR 1260

Query: 181  PDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTI-LEGYCDANWVI 240
            PDI+YAV+RLS++ H P   H  AL+R+LRYL GT ++ +   K  T+ L  Y DA+W  
Sbjct: 1261 PDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAG 1320

Query: 241  DNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVP 290
            D D+  ST GY+  LG   ISW S KQ  + RS+ E+E+ ++     E+ WI +LL ++ 
Sbjct: 1321 DKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELG 1380

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BLAST of Pay0020920 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-48
Identity = 114/314 (36.31%), Postives = 168/314 (53.50%), Query Frame = 0


Query: 1    MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVY---- 60
            M+QP GF    + + VC+LRK++YGLKQAP+ WY +    L+T GF  + SDT ++    
Sbjct: 1064 MSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQR 1123

Query: 61   -------------------SKMLITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSL 120
                                 +L+  T   LS  F +K+  +    LG++ ++    L L
Sbjct: 1124 GRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHL 1183

Query: 121  CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQP-EYAKIIGSVMYLMNYTR 180
             Q  Y   +L + +     PV TP   S  L  + G  +  P EY  I+GS+ YL  +TR
Sbjct: 1184 SQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLA-FTR 1243

Query: 181  PDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTI-LEGYCDANWVI 240
            PD++YAV+RLS+Y H P   HW+AL+R+LRYL GT D+ +   K  T+ L  Y DA+W  
Sbjct: 1244 PDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAG 1303

Query: 241  DNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVP 290
            D D+  ST GY+  LG   ISW S KQ  + RS+ E+E+ ++     E+ WI +LL ++ 
Sbjct: 1304 DTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELG 1363

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BLAST of Pay0020920 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 166.0 bits (419), Expect = 6.3e-40
Identity = 103/303 (33.99%), Postives = 152/303 (50.17%), Query Frame = 0


Query: 1    MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVY---- 60
            M  P+G  IS   + VCKL K++YGLKQA + W++ F   L    F  +S D C+Y    
Sbjct: 1018 MRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDK 1077

Query: 61   ---------------------SKMLITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSL 120
                                     + + K +L   F M DL E    +G++I   +  +
Sbjct: 1078 GNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKI 1137

Query: 121  SLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYT 180
             L QS YV+KIL KF+  + + V TP  +  + +    D         +IG +MY+M  T
Sbjct: 1138 YLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCT 1197

Query: 181  RPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNK---FPTILEGYCDAN 240
            RPD+  AV+ LSRY+   N   W  L+R+LRYLKGTID  L F K   F   + GY D++
Sbjct: 1198 RPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSD 1257

Query: 241  WVIDNDEVNSTCGYVF-LLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLL 275
            W     +  ST GY+F +     I W + +Q  +A S+ E+E++AL  A +E +W+K LL
Sbjct: 1258 WAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLL 1317

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BLAST of Pay0020920 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-30
Identity = 73/211 (34.60%), Postives = 115/211 (54.50%), Query Frame = 0


Query: 57  SKMLITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVS 116
           S  L+    F LSS F MKDLG     LG++I+ + + L L Q+ Y E+IL      D  
Sbjct: 16  SNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCK 75

Query: 117 PVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRY 176
           P+ TP     +   +        ++  I+G++ YL   TRPDI+YAV+ + +  H P   
Sbjct: 76  PMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLA 135

Query: 177 HWDALRRLLRYLKGTIDYCLHFNKFPTI-LEGYCDANWVIDNDEVNSTCGYVFLLGGGAI 236
            +D L+R+LRY+KGTI + L+ +K   + ++ +CD++W        ST G+   LG   I
Sbjct: 136 DFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNII 195

Query: 237 SWKSTKQTCIARSTMESEFIALELAGQEVVW 267
           SW + +Q  ++RS+ E+E+ AL L   E+ W
Sbjct: 196 SWSAKRQPTVSRSSTETEYRALALTAAELTW 225

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BLAST of Pay0020920 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 4.5e-158
Identity = 278/312 (89.10%), Postives = 281/312 (90.06%), Query Frame = 0


Query: 1    MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVYSKM- 60
            MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWY+KFNNTLITNGFKINSSDTCVYSKM 
Sbjct: 961  MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMV 1020

Query: 61   ----------------------LITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSL 120
                                  LITDTK+FLSSHFEMKDLGEADVILGVKIRKNKTSLSL
Sbjct: 1021 GADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNKTSLSL 1080

Query: 121  CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRP 180
            CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRP
Sbjct: 1081 CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRP 1140

Query: 181  DIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVIDN 240
            DIAYAVSRLSRYTHNPNRYHWDALR LLRYLKGTIDYCLHF KFP +LEGYCDANWV DN
Sbjct: 1141 DIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGYCDANWVTDN 1200

Query: 241  DEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPLW 290
            DEVNST GYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQE  WIKNLLGDVPLW
Sbjct: 1201 DEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLW 1260

[Close]

BLAST of Pay0020920 vs. ExPASy TrEMBL
Match: A0A5D3DGL6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00190 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 1.0e-122
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 74  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 133
           MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 134 DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTID 193
           DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTID 120

Query: 194 YCLHFNKFPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESE 253
           YCLHFNKFPTILEGYC+ANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESE
Sbjct: 121 YCLHFNKFPTILEGYCNANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESE 180

Query: 254 FIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS 290
           FIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS
Sbjct: 181 FIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS 216

[Close]

BLAST of Pay0020920 vs. ExPASy TrEMBL
Match: A0A5A7U7W6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001180 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.3e-122
Identity = 215/230 (93.48%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 60  LITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVR 119
           L+TDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFD FDVSPVR
Sbjct: 3   LMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSPVR 62

Query: 120 TPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWD 179
           TPFDASKHL KNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNP+RYHWD
Sbjct: 63  TPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWD 122

Query: 180 ALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKS 239
            LR LLRYLKGTIDYCL+FNKFP +LEGYCDANWV DNDEVNST GYVFLLGGGAISWKS
Sbjct: 123 VLRHLLRYLKGTIDYCLYFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKS 182

Query: 240 TKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS 290
           TKQTCIARSTMESEFIALELAGQE  WIKNLLGDVPLWGT VP SIQCDS
Sbjct: 183 TKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTYVPVSIQCDS 232

[Close]

BLAST of Pay0020920 vs. ExPASy TrEMBL
Match: A0A5A7SN16 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00180 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 6.8e-122
Identity = 219/253 (86.56%), Postives = 231/253 (91.30%), Query Frame = 0


Query: 48  INSSDTCVYSKMLITDTKFFLSSH-FEMKD----------LGEADVILGVKIRKNKTSLS 107
           +NS D+ ++ + + ++    + +H +E+ D          LGEADVILGVKIRKNKTSLS
Sbjct: 542 LNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRYLGEADVILGVKIRKNKTSLS 601

Query: 108 LCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTR 167
           LCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTR
Sbjct: 602 LCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTR 661

Query: 168 PDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVID 227
           PDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVID
Sbjct: 662 PDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVID 721

Query: 228 NDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPL 287
           NDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPL
Sbjct: 722 NDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPL 781

Query: 288 WGTSVPESIQCDS 290
           WGTSVPESIQCDS
Sbjct: 782 WGTSVPESIQCDS 794

[Close]

BLAST of Pay0020920 vs. ExPASy TrEMBL
Match: A0A5N6PGV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08640 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 7.8e-118
Identity = 208/313 (66.45%), Postives = 250/313 (79.87%), Query Frame = 0


Query: 1   MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVYSK-- 60
           M QPEGF +SG E+KVCKLRKSLYGLKQAPK+WY+KF+ TL  +G+ +N+SD+CVYSK  
Sbjct: 312 MLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQDGYIVNNSDSCVYSKRS 371

Query: 61  -------------ML--------ITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSL 120
                        ML        I  TK FLSS FEMKDLGEADVILGVKI++    +SL
Sbjct: 372 KTGYVLICLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEADVILGVKIKRTWNGISL 431

Query: 121 CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRP 180
           CQSHY+E++LKKFD F+++PV+TP+D S  LKKN  +SVSQ EYAKIIGSVM+LMNYTRP
Sbjct: 432 CQSHYIEQMLKKFDCFELNPVKTPYDPSILLKKNNHESVSQSEYAKIIGSVMFLMNYTRP 491

Query: 181 DIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVIDN 240
           DIAY VSRLSRYTHNP++ HW A+ RL+RYL+GT++ CLH+NKFP +LEGYCDANWV DN
Sbjct: 492 DIAYTVSRLSRYTHNPSKEHWSAIHRLMRYLRGTMELCLHYNKFPAVLEGYCDANWVTDN 551

Query: 241 DEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPLW 290
           DEV+ST GYVF++GGGAISWKS+KQTCIARSTMESEFIALELAGQE  W++ LL D+P W
Sbjct: 552 DEVSSTSGYVFIMGGGAISWKSSKQTCIARSTMESEFIALELAGQEAEWLRGLLSDIPQW 611

[Close]

BLAST of Pay0020920 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 567.0 bits (1460), Expect = 9.3e-158
Identity = 278/312 (89.10%), Postives = 281/312 (90.06%), Query Frame = 0


Query: 1    MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVYSKM- 60
            MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWY+KFNNTLITNGFKINSSDTCVYSKM 
Sbjct: 961  MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMV 1020

Query: 61   ----------------------LITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSL 120
                                  LITDTK+FLSSHFEMKDLGEADVILGVKIRKNKTSLSL
Sbjct: 1021 GADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNKTSLSL 1080

Query: 121  CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRP 180
            CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRP
Sbjct: 1081 CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRP 1140

Query: 181  DIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVIDN 240
            DIAYAVSRLSRYTHNPNRYHWDALR LLRYLKGTIDYCLHF KFP +LEGYCDANWV DN
Sbjct: 1141 DIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGYCDANWVTDN 1200

Query: 241  DEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPLW 290
            DEVNST GYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQE  WIKNLLGDVPLW
Sbjct: 1201 DEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLW 1260

[Close]

BLAST of Pay0020920 vs. NCBI nr
Match: TYK22837.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 449.5 bits (1155), Expect = 2.2e-122
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 74  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 133
           MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 134 DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTID 193
           DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTID 120

Query: 194 YCLHFNKFPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESE 253
           YCLHFNKFPTILEGYC+ANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESE
Sbjct: 121 YCLHFNKFPTILEGYCNANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESE 180

Query: 254 FIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS 290
           FIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS
Sbjct: 181 FIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS 216

[Close]

BLAST of Pay0020920 vs. NCBI nr
Match: KAA0049695.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 448.4 bits (1152), Expect = 4.8e-122
Identity = 215/230 (93.48%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 60  LITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVR 119
           L+TDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFD FDVSPVR
Sbjct: 3   LMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSPVR 62

Query: 120 TPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWD 179
           TPFDASKHL KNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNP+RYHWD
Sbjct: 63  TPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWD 122

Query: 180 ALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKS 239
            LR LLRYLKGTIDYCL+FNKFP +LEGYCDANWV DNDEVNST GYVFLLGGGAISWKS
Sbjct: 123 VLRHLLRYLKGTIDYCLYFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKS 182

Query: 240 TKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS 290
           TKQTCIARSTMESEFIALELAGQE  WIKNLLGDVPLWGT VP SIQCDS
Sbjct: 183 TKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTYVPVSIQCDS 232

[Close]

BLAST of Pay0020920 vs. NCBI nr
Match: KAA0026033.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 446.8 bits (1148), Expect = 1.4e-121
Identity = 219/253 (86.56%), Postives = 231/253 (91.30%), Query Frame = 0


Query: 48  INSSDTCVYSKMLITDTKFFLSSH-FEMKD----------LGEADVILGVKIRKNKTSLS 107
           +NS D+ ++ + + ++    + +H +E+ D          LGEADVILGVKIRKNKTSLS
Sbjct: 542 LNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRYLGEADVILGVKIRKNKTSLS 601

Query: 108 LCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTR 167
           LCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTR
Sbjct: 602 LCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTR 661

Query: 168 PDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVID 227
           PDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVID
Sbjct: 662 PDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVID 721

Query: 228 NDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPL 287
           NDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPL
Sbjct: 722 NDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPL 781

Query: 288 WGTSVPESIQCDS 290
           WGTSVPESIQCDS
Sbjct: 782 WGTSVPESIQCDS 794

[Close]

BLAST of Pay0020920 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha])

HSP 1 Score: 433.3 bits (1113), Expect = 1.6e-117
Identity = 208/313 (66.45%), Postives = 250/313 (79.87%), Query Frame = 0


Query: 1   MTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVYSK-- 60
           M QPEGF +SG E+KVCKLRKSLYGLKQAPK+WY+KF+ TL  +G+ +N+SD+CVYSK  
Sbjct: 312 MLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQDGYIVNNSDSCVYSKRS 371

Query: 61  -------------ML--------ITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSL 120
                        ML        I  TK FLSS FEMKDLGEADVILGVKI++    +SL
Sbjct: 372 KTGYVLICLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEADVILGVKIKRTWNGISL 431

Query: 121 CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRP 180
           CQSHY+E++LKKFD F+++PV+TP+D S  LKKN  +SVSQ EYAKIIGSVM+LMNYTRP
Sbjct: 432 CQSHYIEQMLKKFDCFELNPVKTPYDPSILLKKNNHESVSQSEYAKIIGSVMFLMNYTRP 491

Query: 181 DIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVIDN 240
           DIAY VSRLSRYTHNP++ HW A+ RL+RYL+GT++ CLH+NKFP +LEGYCDANWV DN
Sbjct: 492 DIAYTVSRLSRYTHNPSKEHWSAIHRLMRYLRGTMELCLHYNKFPAVLEGYCDANWVTDN 551

Query: 241 DEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPLW 290
           DEV+ST GYVF++GGGAISWKS+KQTCIARSTMESEFIALELAGQE  W++ LL D+P W
Sbjct: 552 DEVSSTSGYVFIMGGGAISWKSSKQTCIARSTMESEFIALELAGQEAEWLRGLLSDIPQW 611

[Close]

BLAST of Pay0020920 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-39
Identity = 99/301 (32.89%), Postives = 156/301 (51.83%), Query Frame = 0


Query: 14  NKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVYSKMLIT----------- 73
           N VC L+KS+YGLKQA +QW+ KF+ TLI  GF  + SD   + K+  T           
Sbjct: 227 NAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDD 286

Query: 74  ------------DTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKF 133
                       + K  L S F+++DLG     LG++I ++   +++CQ  Y   +L + 
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

Query: 134 DSFDVSPVRTPFDASKHLKKNK-GDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRY 193
                 P   P D S     +  GD V    Y ++IG +MYL   TR DI++AV++LS++
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYL-QITRLDISFAVNKLSQF 406

Query: 194 THNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTI-LEGYCDANWVIDNDEVNSTCGYVF 253
           +  P   H  A+ ++L Y+KGT+   L ++    + L+ + DA++    D   ST GY  
Sbjct: 407 SEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCM 466

Query: 254 LLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCD 290
            LG   ISWKS KQ  +++S+ E+E+ AL  A  E++W+     ++ L   S P  + CD
Sbjct: 467 FLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL-PLSKPTLLFCD 525

[Close]

BLAST of Pay0020920 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-31
Identity = 73/211 (34.60%), Postives = 115/211 (54.50%), Query Frame = 0


Query: 57  SKMLITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVS 116
           S  L+    F LSS F MKDLG     LG++I+ + + L L Q+ Y E+IL      D  
Sbjct: 16  SNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCK 75

Query: 117 PVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRY 176
           P+ TP     +   +        ++  I+G++ YL   TRPDI+YAV+ + +  H P   
Sbjct: 76  PMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLA 135

Query: 177 HWDALRRLLRYLKGTIDYCLHFNKFPTI-LEGYCDANWVIDNDEVNSTCGYVFLLGGGAI 236
            +D L+R+LRY+KGTI + L+ +K   + ++ +CD++W        ST G+   LG   I
Sbjct: 136 DFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNII 195

Query: 237 SWKSTKQTCIARSTMESEFIALELAGQEVVW 267
           SW + +Q  ++RS+ E+E+ AL L   E+ W
Sbjct: 196 SWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Pay0020920 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-05
Identity = 26/83 (31.33%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 149 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTI-LEG 208
           MYL   TRPD+ +AV+RLS+++         A+ ++L Y+KGT+   L ++    + L+ 
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 209 YCDANWVIDNDEVNSTCGYVFLL 231
           + D++W    D   S  G+  L+
Sbjct: 61  FADSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Pay0020920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.8e-61	42.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	8.7e-50	37.90	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.3e-48	36.31	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	6.3e-40	33.99	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	2.0e-30	34.60	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Pay0020920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	4.5e-158	89.10	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DGL6	1.0e-122	99.54	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U7W6	2.3e-122	93.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SN16	6.8e-122	86.56	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5N6PGV2	7.8e-118	66.45	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran...	[more]

BLAST of Pay0020920 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	9.3e-158	89.10	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK22837.1	2.2e-122	99.54	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049695.1	4.8e-122	93.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0026033.1	1.4e-121	86.56	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAD6453934.1	1.6e-117	66.45	hypothetical protein E3N88_08640 [Mikania micrantha]	[more]

BLAST of Pay0020920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.1e-39	32.89	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.4e-31	34.60	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.4e-05	31.33	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..58 e-value: 2.3E-14 score: 53.6 coord: 60..122 e-value: 2.1E-9 score: 37.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..199
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 206..289 e-value: 3.57465E-31 score: 111.406
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 13..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0020920.1	Pay0020920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding