Pay0020556 (gene) Melon (Payzawat) v1

Overview


Name	Pay0020556
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Transposase
Location	chr08: 16292584 .. 16293026 (-)
RNA-Seq Expression	Pay0020556
Synteny	Pay0020556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCATCAAGAAAGTTTCGAACGTTCAAGACCACGTTAACTCAGAAGTATATACTTCCGTCTAAGGATCAACCATCACTCTTGCAGTTTCCTCCCAAAATCTATTCTCATATAAATCAAGAAGATTGGGAATCGTTTGTGGATGCTAGACTAAGTAAAGAATGGGAGGTAAATAAGTTTACATTTTCACTTTAATTTTGTTTTGATATCTACCTACAAACTAATACGTTGTACAGGATTATAGTCGTATTCAAAGGGAAAGAAGGTCGAAATGCGTATACAATCACCACATGTCACAGGGATATGCTAATCTTGCCAATGAACTAGTGAGTATTTCTAATTAAATTGAAGAATTTATCTTAATATGTTGTTGTTAATTAAATATCTATCTTTTGTTATAGAAAATAACGCATGATGTTTCCTATCGTTCAACTCTTTGA

mRNA sequence

ATGTCTGCATCAAGAAAGTTTCGAACGTTCAAGACCACGTTAACTCAGAAGTATATACTTCCGTCTAAGGATCAACCATCACTCTTGCAGTTTCCTCCCAAAATCTATTCTCATATAAATCAAGAAGATTGGGAATCGTTTGTGGATGCTAGACTAAGTAAAGAATGGGAGGATTATAGTCGTATTCAAAGGGAAAGAAGGTCGAAATGCGTATACAATCACCACATGTCACAGGGATATGCTAATCTTGCCAATGAACTAAAAATAACGCATGATGTTTCCTATCGTTCAACTCTTTGA

Coding sequence (CDS)

ATGTCTGCATCAAGAAAGTTTCGAACGTTCAAGACCACGTTAACTCAGAAGTATATACTTCCGTCTAAGGATCAACCATCACTCTTGCAGTTTCCTCCCAAAATCTATTCTCATATAAATCAAGAAGATTGGGAATCGTTTGTGGATGCTAGACTAAGTAAAGAATGGGAGGATTATAGTCGTATTCAAAGGGAAAGAAGGTCGAAATGCGTATACAATCACCACATGTCACAGGGATATGCTAATCTTGCCAATGAACTAAAAATAACGCATGATGTTTCCTATCGTTCAACTCTTTGA

Protein sequence

MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYSRIQRERRSKCVYNHHMSQGYANLANELKITHDVSYRSTL

Homology

[Close]

BLAST of Pay0020556 vs. ExPASy TrEMBL
Match: A0A5A7TY60 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00820 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYS 60
           MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLS+EWEDYS
Sbjct: 665 MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSEEWEDYS 724

Query: 61  RIQRERRSKCVYNHHMS-QGYANLANELKITHDVSYRSTL 100
           RIQRERRSKCVYNHHMS +GYANLA+ELKITHDVSYRSTL
Sbjct: 725 RIQRERRSKCVYNHHMSRKGYANLADELKITHDVSYRSTL 764

[Close]

BLAST of Pay0020556 vs. ExPASy TrEMBL
Match: A0A5A7VGQ2 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00330 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1    MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYS 60
            MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLS+EWEDYS
Sbjct: 1002 MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSEEWEDYS 1061

Query: 61   RIQRERRSKCVYNHHMS-QGYANLANELKITHDVSYRSTL 100
            RIQRERRSKCVYNHHMS +GYANLA+ELKITHDVSYRSTL
Sbjct: 1062 RIQRERRSKCVYNHHMSRKGYANLADELKITHDVSYRSTL 1101

[Close]

BLAST of Pay0020556 vs. ExPASy TrEMBL
Match: A0A5A7V303 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00190 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1    MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYS 60
            MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLS+EWEDYS
Sbjct: 955  MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSEEWEDYS 1014

Query: 61   RIQRERRSKCVYNHHMS-QGYANLANELKITHDVSYRSTL 100
            RIQRERRSKCVYNHHMS +GYANLA+ELKITHDVSYRSTL
Sbjct: 1015 RIQRERRSKCVYNHHMSRKGYANLADELKITHDVSYRSTL 1054

[Close]

BLAST of Pay0020556 vs. ExPASy TrEMBL
Match: A0A5D3CV07 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001190 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1    MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYS 60
            MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLS+EWEDYS
Sbjct: 1002 MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSEEWEDYS 1061

Query: 61   RIQRERRSKCVYNHHMS-QGYANLANELKITHDVSYRSTL 100
            RIQRERRSKCVYNHHMS +GYANLA+ELKITHDVSYRSTL
Sbjct: 1062 RIQRERRSKCVYNHHMSRKGYANLADELKITHDVSYRSTL 1101

[Close]

BLAST of Pay0020556 vs. ExPASy TrEMBL
Match: A0A5A7UYV5 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold386G00650 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYS 60
           MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLS+EWEDYS
Sbjct: 797 MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSEEWEDYS 856

Query: 61  RIQRERRSKCVYNHHMS-QGYANLANELKITHDVSYRSTL 100
           RIQRERRSKCVYNHHMS +GYANLA+ELKITHDVSYRSTL
Sbjct: 857 RIQRERRSKCVYNHHMSRKGYANLADELKITHDVSYRSTL 896

[Close]

BLAST of Pay0020556 vs. NCBI nr
Match: TYK21543.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 7.3e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1    MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYS 60
            MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLS+EWEDYS
Sbjct: 1002 MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSEEWEDYS 1061

Query: 61   RIQRERRSKCVYNHHMS-QGYANLANELKITHDVSYRSTL 100
            RIQRERRSKCVYNHHMS +GYANLA+ELKITHDVSYRSTL
Sbjct: 1062 RIQRERRSKCVYNHHMSRKGYANLADELKITHDVSYRSTL 1101

[Close]

BLAST of Pay0020556 vs. NCBI nr
Match: KAA0060234.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 7.3e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYS 60
           MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLS+EWEDYS
Sbjct: 797 MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSEEWEDYS 856

Query: 61  RIQRERRSKCVYNHHMS-QGYANLANELKITHDVSYRSTL 100
           RIQRERRSKCVYNHHMS +GYANLA+ELKITHDVSYRSTL
Sbjct: 857 RIQRERRSKCVYNHHMSRKGYANLADELKITHDVSYRSTL 896

[Close]

BLAST of Pay0020556 vs. NCBI nr
Match: KAA0046916.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 7.3e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYS 60
           MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLS+EWEDYS
Sbjct: 665 MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSEEWEDYS 724

Query: 61  RIQRERRSKCVYNHHMS-QGYANLANELKITHDVSYRSTL 100
           RIQRERRSKCVYNHHMS +GYANLA+ELKITHDVSYRSTL
Sbjct: 725 RIQRERRSKCVYNHHMSRKGYANLADELKITHDVSYRSTL 764

[Close]

BLAST of Pay0020556 vs. NCBI nr
Match: KAA0066494.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 7.3e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1    MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYS 60
            MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLS+EWEDYS
Sbjct: 1002 MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSEEWEDYS 1061

Query: 61   RIQRERRSKCVYNHHMS-QGYANLANELKITHDVSYRSTL 100
            RIQRERRSKCVYNHHMS +GYANLA+ELKITHDVSYRSTL
Sbjct: 1062 RIQRERRSKCVYNHHMSRKGYANLADELKITHDVSYRSTL 1101

[Close]

BLAST of Pay0020556 vs. NCBI nr
Match: TYK13605.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 7.3e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1    MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSKEWEDYS 60
            MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLS+EWEDYS
Sbjct: 1002 MSASRKFRTFKTTLTQKYILPSKDQPSLLQFPPKIYSHINQEDWESFVDARLSEEWEDYS 1061

Query: 61   RIQRERRSKCVYNHHMS-QGYANLANELKITHDVSYRSTL 100
            RIQRERRSKCVYNHHMS +GYANLA+ELKITHDVSYRSTL
Sbjct: 1062 RIQRERRSKCVYNHHMSRKGYANLADELKITHDVSYRSTL 1101

The following BLAST results are available for this feature:

BLAST of Pay0020556 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0020556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY60	3.6e-46	96.00	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00820 PE...	[more]
A0A5A7VGQ2	3.6e-46	96.00	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00330 PE=...	[more]
A0A5A7V303	3.6e-46	96.00	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00190 PE=...	[more]
A0A5D3CV07	3.6e-46	96.00	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001190 PE...	[more]
A0A5A7UYV5	3.6e-46	96.00	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold386G00650 PE...	[more]

BLAST of Pay0020556 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21543.1	7.3e-46	96.00	transposase [Cucumis melo var. makuwa]	[more]
KAA0060234.1	7.3e-46	96.00	transposase [Cucumis melo var. makuwa]	[more]
KAA0046916.1	7.3e-46	96.00	transposase [Cucumis melo var. makuwa]	[more]
KAA0066494.1	7.3e-46	96.00	transposase [Cucumis melo var. makuwa]	[more]
TYK13605.1	7.3e-46	96.00	transposase [Cucumis melo var. makuwa]	[more]

BLAST of Pay0020556 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0020556.1	Pay0020556.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008234	cysteine-type peptidase activity