Pay0020522 (gene) Melon (Payzawat) v1

Overview
NamePay0020522
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description30S ribosomal protein S20, chloroplastic
Locationchr07: 6772068 .. 6775672 (+)
RNA-Seq ExpressionPay0020522
SyntenyPay0020522
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCGAATGAGAATATACAAAACTCGAATCCAAACATCCGGAAACAATACGGATAAAATCGATACTGTAAAGCTCCGTTTCAAGTGGATAAAGCGCCAACGAACCATTCTTCTTCTTCTTCAACCTCTGGAGTTTTTCTTTTCAAGAATCGCCTATACATAAATGGCGGCAGCTGCAGTTACTTGCTTCGCTCTTTCTTCTAAGTTCGGAAATCTTTCCCTTAATGGTTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGATCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGTGAGTTTTTATGGGTTCCCTTTTTTTTCTATTTTCTATTCTTTTTTTGTTAGGAAAACTATCGAATTGCTGCTGGACTTACTTTTGTCCATTTTCGTAAAGGGTGTCTGTCGATGAGGAAAACTGAGAGGATGCATCGTTACTCTGTGGTCTGCGAGGCCGCTCCTAAGACCAAAGCTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGGATTTACAATAAAGCCCGGAAGTCTGAAATTAAAACCAGGATGAAGAAGGTACTTAATTTTTGCCCCTTTGTATGCGCATTTGAATAATAGGAATGATATATTCTAGAATTCGTTTTATCTCAGAGTATTGTATATTTCTTTTATAAGAAAGAACTTTGCATTGATGGAAGGAAATTACAAATGAAAGGGGAAAACCCCTAAATGAGACATACAGTTTGAAAGGAGATTAGTATAGCTAATAGTGGAATAAGGGAGTGCATTTGCACCAAGTCTCTACCATGTTAACTATAGCATAAAAAATTATAAGATGAAAGTTATTTGTCTTGGAAGACTCTACTATTCCGTTCTTGCCAAATGTTTCAGCAGAACGCTCCAATGAAATTTTCTCATGAAATCTTTGTCCCGTTTTGGAAACGTGCCCTTGAAGGACAAAGGATAGGATCTTCTGGAAGAGCTGTGTGCCATAAAAGCTGTGTCAACAATTTTTCCTAGGCAATATTTTATAGTTGGAAACCCTTTCTCTAAGGGTTTTTGTGGGCTTGGTTTTCTGTATGCCTTTGTATTGTTTCATTTTTTCTTGATTAAAGTAGTTTTTTTGTATGAAAAGATGGAAGTAGAAAGGAAATGGTTCCAAAAGGTGTTACTGTTGGCAAAGGTGCATGATAACAAAAGGTGAATTTCTGATTCAGATTGTTGTTTACAAATAGAGAGAGCACCAATTGTGGAGACAGAACCATGTAAGGCATTCTTCTTTGGAGCTCGTAATGGTTTGTGATGGCTTTCTTAGATAGCTCCCAAAGAAAAGACTTAATCTTCTTTGGATAGTGACCCTTCCATATCAGATGATACATAAGCAAGGTTTCATTGATGGAGGGTATTGAAAGTAGAGACATAAAACACAAATTTACATGGAAATCCTAGTATAGGGCCTCCATACTGATATTTCTTATTATTGTCTTATGATAATAAAGGTACAAAGGGGGAAGTATCTATAGGAAATACGAGCCTTATTTAAAATAATAAAAAATTAGAACGAAGGAAATCATAACTACTCTTGGACTTTCAACAAGCCCACTATTTCTATTAGAGGGGAATAAATCATAAAAAGGGGAGCTATTTGGAAAAATGCCAGTGAGTTCTAGCTTCCAAAGGCCCCTGTCAGGTCTGTTATGAAAGGAAACAGCAGCTAGAATGTTAAAGAGAGTTGCATATTCTTCAATTTCAGCCTCTATCTGATTCCTTCTCAATGTTAGGTTCCAACCCAAGGTTTGTGTTCCAAAATTTAGTATTAGCCCAATCTTGTTGTGAGAAAAGGCAGAATGAGGGGGATTTGTGATCAAGGGGTTCGTATGGAATGTATTTCTGGGTCATTTTAATTTTAGGGTGGTATGTGCCTAATTTGTAAGTACCTCTAGACAAACTGAGCTATATCAAGACTCAAGGGGTTACTTAACCCTTTATGTTCCTTATGAAACATGCAAGTCGCCGGTTATTACTTTAGCTGTTGAAGATAAATGCGTAAAATGATTATCCTCATCTTGACTTGTCCTGAATGGGGACTAGATGAAATTCGTAAAATTAAGAGATGGAAAGTAGATGCTTACAATTTTGTATTCAGTACCCAATGGACAAATGGTTATATATATAAACATGCATAATATGGTTTTGTTTGATAAGGTTAATGGTAGCTCGATGGTTTGGATTCTTGTTGTGAAAATCTGATCGGCAGAAAATCTTATTTTTTCAGAAATGATTATAGTTACTGTTCACTGGGGAAAAAATGAAGACTACAATGGCTAGTACAGAAAAAAAATTATGAACTTCGCTTCAGAAATCTTGTAATCAAGACTGATTTTCTCATTTATAAAAGTTATCGTTTAAGTTAAATTGGACTTTTGATGTGTAACAGAAAATTTAAACTATCAAGCATCCCAACTTGATGGAGAACTGTAAAAGGACTAGAAAGAAAAGTCTAGTAAATGGTAAAGTTGAATCCTTTCTGATTGGTCAGAGGCAGGTTCTTTAGGAAGTTTTCATGTGGGTAATGAGTTTAGACTGAATTTTGTATAATTCTTTTGGATCTTTTTTCAGCCTCAGTCTTCAAGTCTTGAACTTATTCAAGGGCATTAAGGTGTTTGAATGATCTTTTGGCTTAGCTGTAGATCCTTTTGAATCTTGGGTTGCGACCATCAACTGTTCTTTGCATGAGCTATGCAATATGATTAACATCTTTTCCCGTTCTAATTATAAGTGGCCCTTGTGTTATCTTGTGGATCTTAGAGGTAATCCTAAAGCTGTAAAGTCGTGTGTGACCAATGACTAAGAGGACCTCGCTTCTCCTTTTTGGTGCCTCCAGGGAAGTGCCTAATTCTTTTTGCGAAGCTTTCTTTGGTCATCCTTCCAAAAAATCATAAGCTTTATGGCTTCTTGCGTTAGAGTTTTCTTATATCTGCTAAAGGACAAGACTAAAGCATAATCTTCATATGGTTGAACAAAACATCCTCTACATACTTACTTTTGGATATTGTGAAGAAAAAGAAAAAAATTTCTGTTTCTTTCCAGAACTAGTCAGCACAATCATGACCTCTCTCTCTTACATTTCCAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTTATGGCAGAAGCGTACTCCGTGATCGACAAAGCCGTGAGAGCGGGCACGCTGCACCGAAATACTGCAGCGCGTCGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCGGATTCACCAGCGGCTGCCTGATGCGCTCTCTATTGAGGAATGAATGTGGAAGATCATTCTATTCTTTTTTGACGTAGATAAATGTCAACCTTTTTTTTTCATCTATTTCCTTTACTTTTGTATTTAGTTCGAACCTTTTTCTATGTCAACCGTTTAAGTTTCACTTCTATTTCATCTCCCTCTTCAATTTTCTAACACCATTACACCCTAAAAATTTACAAGTCATTACCTTAAAATTTTATATTCATAGG

mRNA sequence

ACCGAATGAGAATATACAAAACTCGAATCCAAACATCCGGAAACAATACGGATAAAATCGATACTGTAAAGCTCCGTTTCAAGTGGATAAAGCGCCAACGAACCATTCTTCTTCTTCTTCAACCTCTGGAGTTTTTCTTTTCAAGAATCGCCTATACATAAATGGCGGCAGCTGCAGTTACTTGCTTCGCTCTTTCTTCTAAGTTCGGAAATCTTTCCCTTAATGGTTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGATCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGGTGTCTGTCGATGAGGAAAACTGAGAGGATGCATCGTTACTCTGTGGTCTGCGAGGCCGCTCCTAAGACCAAAGCTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGGATTTACAATAAAGCCCGGAAGTCTGAAATTAAAACCAGGATGAAGAAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTTATGGCAGAAGCGTACTCCGTGATCGACAAAGCCGTGAGAGCGGGCACGCTGCACCGAAATACTGCAGCGCGTCGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCGGATTCACCAGCGGCTGCCTGATGCGCTCTCTATTGAGGAATGAATGTGGAAGATCATTCTATTCTTTTTTGACGTAGATAAATGTCAACCTTTTTTTTTCATCTATTTCCTTTACTTTTGTATTTAGTTCGAACCTTTTTCTATGTCAACCGTTTAAGTTTCACTTCTATTTCATCTCCCTCTTCAATTTTCTAACACCATTACACCCTAAAAATTTACAAGTCATTACCTTAAAATTTTATATTCATAGG

Coding sequence (CDS)

ATGGCGGCAGCTGCAGTTACTTGCTTCGCTCTTTCTTCTAAGTTCGGAAATCTTTCCCTTAATGGTTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGATCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGGTGTCTGTCGATGAGGAAAACTGAGAGGATGCATCGTTACTCTGTGGTCTGCGAGGCCGCTCCTAAGACCAAAGCTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGGATTTACAATAAAGCCCGGAAGTCTGAAATTAAAACCAGGATGAAGAAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTTATGGCAGAAGCGTACTCCGTGATCGACAAAGCCGTGAGAGCGGGCACGCTGCACCGAAATACTGCAGCGCGTCGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCGGATTCACCAGCGGCTGCCTGA

Protein sequence

MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAAA
Homology
[Close]
BLAST of Pay0020522 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-45
Identity = 110/178 (61.80%), Postives = 133/178 (74.72%), Query Frame = 0 

Query: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MA  +  C ++SSK  NLS +  S+  P    +S+L+ L+FS+N+S   FS GC S+   
Sbjct: 6   MACVSSQCLSISSKLHNLSFS--STQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSF 65

Query: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R   +SVVCE A   KADSAAKR RQAE RR+ NKARKSE+KTRM+KV EALD LKKK+
Sbjct: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125

Query: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
            A +EE++PI+ L+AEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 176

[Close]
BLAST of Pay0020522 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.4e-45
Identity = 115/187 (61.50%), Postives = 141/187 (75.40%), Query Frame = 0 

Query: 7   TCFALSSKFGNLSLNGFSSSIPAAP------SSSTL-RSLSFSSNIS-LSAFSNGCLSMR 66
           +C  L S+F  LSL G S S P++       +S+TL  SLSFS ++S   AFS G L ++
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  KTERMHRYSVVCE-AAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLK 126
           K  R     +VCE AAP  KADSAAKRARQAEKRR+YNK++KSE +TRMKKVLEAL+GLK
Sbjct: 70  KPMRQ---LIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKAEAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKL+ EAYS IDKAV+   LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]
BLAST of Pay0020522 vs. ExPASy Swiss-Prot
Match: P80380 (30S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=rpsT PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVLPIEKLMAEAYS 139
           SA KR RQ+ KRR+ NKA+KS IKT  KK ++         E ++EE L   K+M +A S
Sbjct: 11  SALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQ------EGKAEEAL---KIMRKAES 70

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARR 166
           +IDKA +  TLH+N AARRKSRL R+
Sbjct: 71  LIDKAAKGSTLHKNAAARRKSRLMRK 87

[Close]
BLAST of Pay0020522 vs. ExPASy Swiss-Prot
Match: P62661 (30S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=rpsT PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVLPIEKLMAEAYS 139
           SA KR RQ+ KRR+ NKA+KS IKT  KK ++         E ++EE L   K+M +A S
Sbjct: 11  SALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQ------EGKAEEAL---KIMRKAES 70

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARR 166
           +IDKA +  TLH+N AARRKSRL R+
Sbjct: 71  LIDKAAKGSTLHKNAAARRKSRLMRK 87

[Close]
BLAST of Pay0020522 vs. ExPASy Swiss-Prot
Match: A7HJB0 (30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsT PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVLPIEKLMAEAYS 139
           SA KR R +EKRR+ NKA K+ +K ++K VL A+        AQ +    I +L  +A S
Sbjct: 6   SAEKRVRVSEKRRVLNKAYKTSMKNKIKAVLAAI--------AQKKSAEEIMELFRKAQS 65

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARRKKA 169
            IDKA ++G +H+N A+RRKSRLA + KA
Sbjct: 66  AIDKAAKSGAIHKNQASRRKSRLAVKVKA 86

[Close]
BLAST of Pay0020522 vs. ExPASy TrEMBL
Match: A0A5A7VMD2 (30S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001620 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.1e-88
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Pay0020522 vs. ExPASy TrEMBL
Match: A0A1S3CJU9 (30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.1e-88
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Pay0020522 vs. ExPASy TrEMBL
Match: A0A0A0KZK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.2e-85
Identity = 177/184 (96.20%), Postives = 182/184 (98.91%), Query Frame = 0 

Query: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCF+LSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ER+HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIE L+AEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Pay0020522 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.3e-70
Identity = 154/183 (84.15%), Postives = 167/183 (91.26%), Query Frame = 0 

Query: 2   AAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTE 61
           A A ++CFAL SKF NLSLN  SSS+P +PSSSTLRSLSFSSN+S+SAFSNGCLS+ K +
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAE 121
           R  RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTRMKKV+EALD LKKK E
Sbjct: 63  RPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122

Query: 122 AQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSP 181
           AQSEEVLPIEKL+AEA+SVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWYTP SP
Sbjct: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182

Query: 182 AAA 185
           AAA
Sbjct: 183 AAA 184

[Close]
BLAST of Pay0020522 vs. ExPASy TrEMBL
Match: A0A6J1CG14 (30S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010468 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.3e-70
Identity = 154/184 (83.70%), Postives = 165/184 (89.67%), Query Frame = 0 

Query: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCF++SSKF NLSLN  SSS PA+ SSSTL+SL+FSSN+S  AFSNGCLSM + 
Sbjct: 1   MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNGCLSMSEA 60

Query: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAPK K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALD LKKK 
Sbjct: 61  QRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVL IEKL+AEAYSVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWY P S
Sbjct: 121 EAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Pay0020522 vs. NCBI nr
Match: XP_008463697.1 (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1 30S ribosomal protein S20 [Cucumis melo var. makuwa] >TYK27958.1 30S ribosomal protein S20 [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-87
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Pay0020522 vs. NCBI nr
Match: XP_004146049.1 (30S ribosomal protein S20, chloroplastic [Cucumis sativus] >KGN55105.1 hypothetical protein Csa_012631 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 1.5e-84
Identity = 177/184 (96.20%), Postives = 182/184 (98.91%), Query Frame = 0 

Query: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCF+LSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ER+HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIE L+AEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Pay0020522 vs. NCBI nr
Match: XP_038899721.1 (30S ribosomal protein S20, chloroplastic [Benincasa hispida])

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-73
Identity = 160/184 (86.96%), Postives = 168/184 (91.30%), Query Frame = 0 

Query: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAA AV+CF+L SKF NLSLN  SS IPA+PSS TLRSLSFSSN S+SAFSNGCL+M K 
Sbjct: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60

Query: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAPK KADSAAKR RQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120

Query: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Pay0020522 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024812.1 30S ribosomal protein S20, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.0 bits (702), Expect = 4.7e-70
Identity = 154/183 (84.15%), Postives = 167/183 (91.26%), Query Frame = 0 

Query: 2   AAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTE 61
           A A ++CFAL SKF NLSLN  SSS+P +PSSSTLRSLSFSSN+S+SAFSNGCLS+ K +
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAE 121
           R  RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTRMKKV+EALD LKKK E
Sbjct: 63  RPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122

Query: 122 AQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSP 181
           AQSEEVLPIEKL+AEA+SVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWYTP SP
Sbjct: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182

Query: 182 AAA 185
           AAA
Sbjct: 183 AAA 184

[Close]
BLAST of Pay0020522 vs. NCBI nr
Match: XP_022139608.1 (30S ribosomal protein S20, chloroplastic [Momordica charantia])

HSP 1 Score: 275.0 bits (702), Expect = 4.7e-70
Identity = 154/184 (83.70%), Postives = 165/184 (89.67%), Query Frame = 0 

Query: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCF++SSKF NLSLN  SSS PA+ SSSTL+SL+FSSN+S  AFSNGCLSM + 
Sbjct: 1   MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNGCLSMSEA 60

Query: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAPK K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALD LKKK 
Sbjct: 61  QRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVL IEKL+AEAYSVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWY P S
Sbjct: 121 EAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Pay0020522 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 182.2 bits (461), Expect = 3.8e-46
Identity = 115/187 (61.50%), Postives = 141/187 (75.40%), Query Frame = 0 

Query: 7   TCFALSSKFGNLSLNGFSSSIPAAP------SSSTL-RSLSFSSNIS-LSAFSNGCLSMR 66
           +C  L S+F  LSL G S S P++       +S+TL  SLSFS ++S   AFS G L ++
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  KTERMHRYSVVCE-AAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLK 126
           K  R     +VCE AAP  KADSAAKRARQAEKRR+YNK++KSE +TRMKKVLEAL+GLK
Sbjct: 70  KPMRQ---LIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKAEAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKL+ EAYS IDKAV+   LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

The following BLAST results are available for this feature:
BLAST of Pay0020522 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821301.8e-4561.8030S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P... [more]
Q9ASV65.4e-4561.5030S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2... [more]
P803801.6e-0951.1630S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 /... [more]
P626612.1e-0951.1630S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 703... [more]
A7HJB01.1e-0846.0730S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5... [more]
BLAST of Pay0020522 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VMD29.1e-88100.0030S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CJU99.1e-88100.0030S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779... [more]
A0A0A0KZK97.2e-8596.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1[more]
A0A6J1IG572.3e-7084.1530S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1CG142.3e-7083.7030S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of Pay0020522 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008463697.11.9e-87100.00PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1... [more]
XP_004146049.11.5e-8496.2030S ribosomal protein S20, chloroplastic [Cucumis sativus] >KGN55105.1 hypotheti... [more]
XP_038899721.11.2e-7386.9630S ribosomal protein S20, chloroplastic [Benincasa hispida][more]
XP_022976587.14.7e-7084.1530S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 3... [more]
XP_022139608.14.7e-7083.7030S ribosomal protein S20, chloroplastic [Momordica charantia][more]
BLAST of Pay0020522 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15190.13.8e-4661.50chloroplast 30S ribosomal protein S20, putative [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..126
NoneNo IPR availablePANTHERPTHR33398:SF530S RIBOSOMAL PROTEIN S20, CHLOROPLASTICcoord: 1..183
IPR036510Ribosomal protein S20 superfamilyGENE3D1.20.58.110Ribosomal protein S20coord: 78..184
e-value: 3.1E-38
score: 132.3
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 79..181
IPR002583Ribosomal protein S20TIGRFAMTIGR00029TIGR00029coord: 78..164
e-value: 1.7E-18
score: 64.9
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 79..165
e-value: 1.9E-23
score: 82.8
IPR002583Ribosomal protein S20PANTHERPTHR3339830S RIBOSOMAL PROTEIN S20coord: 1..183
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 63..168
score: 16.150465

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0020522.1Pay0020522.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding