Pay0020146 (gene) Melon (Payzawat) v1

Overview


Name	Pay0020146
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	chr05: 3298590 .. 3299500 (-)
RNA-Seq Expression	Pay0020146
Synteny	Pay0020146

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAAAAAAGATAATTATTAGTCGTAAATAATTTTCGTCTAAATAGCCCTGAATTTTTTTTCCTTAGTAAGTAGACTATCGGGTGAAATAGAATATTATCATCAAATTGTTTTTTTTTTTTTTCTCTCTTCATCACCATTCAAACTTTAGTTATTTATTTTTCCCTGAAAAAAAAAGAGAAAATTATACAATTGATTGGGTAAAATATTTGACGAAAAAAAGAAAAAAAGAGTGTATAAGAACAAAGCCTTCTCACACCAATAGAACCCCCTATCTACTCCTCCATTTCCTTACTTCCTAACCCACTGTCTCTCTTAAATTCTCTCAATAATCTCTCCAATGGCTGCCGCTGCTGTCATGACTGAACCCACAGTAACCTTACCGTCGCCATATCCAATCGAATTTCTCTTTGACCTCGACACAGTTCTCTCCGGAGCCGACGACCTCGATTGCAGCTGTCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACTGTTGTGGCCGATGTTTGTGCCGTTTGTTTGGACGATTTCCGGCCAGATGAAGCCGGTAAACAAATCCCCTGCGGACACGTGTACCATGAATCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGGTGCCTTGTCGCTGGCCAACCGCCGGATTCGACTTTGATCCGACGGTAGAGGTTTTTTCTTTCTTTCTTTTCTTCCTTTTTTTGTTGGTGAGGTTTGTTCGACAAATTACAAGTAATTAATTGTTGTTAATTATTGTGATTGCGACTCTTCCCCAAATTTGGAATTAGCTACTAATTGAACATAACTCTCTCTCTTAATTTCTCTCTAAAGTTACTTCGCTGAAATGAGGTTAGTCTAACCCCCACCAAACTCTCTTTTAAAATCGGAC

mRNA sequence

TCACAAAAAAGATAATTATTAGTCGTAAATAATTTTCGTCTAAATAGCCCTGAATTTTTTTTCCTTAGTAAGTAGACTATCGGGTGAAATAGAATATTATCATCAAATTGTTTTTTTTTTTTTTCTCTCTTCATCACCATTCAAACTTTAGTTATTTATTTTTCCCTGAAAAAAAAAGAGAAAATTATACAATTGATTGGGTAAAATATTTGACGAAAAAAAGAAAAAAAGAGTGTATAAGAACAAAGCCTTCTCACACCAATAGAACCCCCTATCTACTCCTCCATTTCCTTACTTCCTAACCCACTGTCTCTCTTAAATTCTCTCAATAATCTCTCCAATGGCTGCCGCTGCTGTCATGACTGAACCCACAGTAACCTTACCGTCGCCATATCCAATCGAATTTCTCTTTGACCTCGACACAGTTCTCTCCGGAGCCGACGACCTCGATTGCAGCTGTCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACTGTTGTGGCCGATGTTTGTGCCGTTTGTTTGGACGATTTCCGGCCAGATGAAGCCGGTAAACAAATCCCCTGCGGACACGTGTACCATGAATCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGGTGCCTTGTCGCTGGCCAACCGCCGGATTCGACTTTGATCCGACGGTAGAGGTTTTTTCTTTCTTTCTTTTCTTCCTTTTTTTGTTGGTGAGGTTTGTTCGACAAATTACAAGTAATTAATTGTTGTTAATTATTGTGATTGCGACTCTTCCCCAAATTTGGAATTAGCTACTAATTGAACATAACTCTCTCTCTTAATTTCTCTCTAAAGTTACTTCGCTGAAATGAGGTTAGTCTAACCCCCACCAAACTCTCTTTTAAAATCGGAC

Coding sequence (CDS)

ATGGCTGCCGCTGCTGTCATGACTGAACCCACAGTAACCTTACCGTCGCCATATCCAATCGAATTTCTCTTTGACCTCGACACAGTTCTCTCCGGAGCCGACGACCTCGATTGCAGCTGTCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACTGTTGTGGCCGATGTTTGTGCCGTTTGTTTGGACGATTTCCGGCCAGATGAAGCCGGTAAACAAATCCCCTGCGGACACGTGTACCATGAATCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGGTGCCTTGTCGCTGGCCAACCGCCGGATTCGACTTTGATCCGACGGTAG

Protein sequence

MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVCAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR

Homology

[Close]

BLAST of Pay0020146 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.9e-10
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 60  CAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS 112
           C++C DDF+ DE  +++PC H+YHE+CI  WL +   CP+CR  +A    D+
Sbjct: 253 CSICWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLADDGNDA 304

[Close]

BLAST of Pay0020146 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-09
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 60  CAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 111
           CAVC+DDF      KQ+PC H+YH+ C+  WL + + CP+CR  +    PD
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPD 274

[Close]

BLAST of Pay0020146 vs. ExPASy Swiss-Prot
Match: Q91YL2 (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 60  CAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQ 108
           C VC +D+   E+ +Q+PC H++H+SCI  WL   D CP+CR  + GQ
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 278

[Close]

BLAST of Pay0020146 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 60  CAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 111
           CAVC+D+F      KQ+PC HV+H+ C+  WL + + CP+CR  +    PD
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPD 266

[Close]

BLAST of Pay0020146 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 60  CAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDST 113
           C VC +D+  +E  +Q+PC H +H SCI  WL + D CP+CR  + G+  DST
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGE--DST 278

[Close]

BLAST of Pay0020146 vs. ExPASy TrEMBL
Match: A0A5A7V2P4 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00540 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 117
           AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116

[Close]

BLAST of Pay0020146 vs. ExPASy TrEMBL
Match: A0A1S4DZX3 (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 117
           AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116

[Close]

BLAST of Pay0020146 vs. ExPASy TrEMBL
Match: A0A0A0LKR7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-58
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPT+ LPSPYPIEFLFDLDTVLSGADDL C CQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGC-CQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 117
           AVCLDDF PDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 115

[Close]

BLAST of Pay0020146 vs. ExPASy TrEMBL
Match: A0A6J1G511 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111450796 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.0e-44
Identity = 92/119 (77.31%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60
           MAA +V  E T  L + YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVC
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVC 60

Query: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 117
           AVCL+DFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+   STLIRR
Sbjct: 61  AVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Pay0020146 vs. ExPASy TrEMBL
Match: A0A6J1DM93 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111021870 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.5e-35
Identity = 80/117 (68.38%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQIT---PSDSPVADFPTVVA 60
           MAA AV+ E T  L + YP+E LFDLD VLSG DD  C C +T    SDS VAD PTVVA
Sbjct: 1   MAAVAVLAETTRNLAAAYPMELLFDLDMVLSGDDDFGC-CHVTAANSSDSIVADLPTVVA 60

Query: 61  DVCAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLI 115
           DVCAVC +DFR DE GKQIPCGHVYHE CISSWL VADCCPLCR  V   PP ST I
Sbjct: 61  DVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRVEPPPPPSTSI 116

[Close]

BLAST of Pay0020146 vs. NCBI nr
Match: XP_016901521.1 (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo] >KAA0061530.1 RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa] >TYK10743.1 RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 3.8e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 117
           AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116

[Close]

BLAST of Pay0020146 vs. NCBI nr
Match: KAE8651509.1 (hypothetical protein Csa_019434 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 3.4e-58
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPT+ LPSPYPIEFLFDLDTVLSGADDL C CQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGC-CQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 117
           AVCLDDF PDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 115

[Close]

BLAST of Pay0020146 vs. NCBI nr
Match: XP_004150849.1 (E3 ubiquitin-protein ligase RNF181 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 3.4e-58
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPT+ LPSPYPIEFLFDLDTVLSGADDL C CQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGC-CQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 117
           AVCLDDF PDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 115

[Close]

BLAST of Pay0020146 vs. NCBI nr
Match: XP_038877422.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 2.9e-49
Identity = 99/116 (85.34%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPT  LP+ YPIEFLFDLD VLSGADD  C CQI+ +DS VAD P VVADVC
Sbjct: 1   MAAAAVMTEPTRNLPATYPIEFLFDLDMVLSGADDFGC-CQISATDSLVADLPIVVADVC 60

Query: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 117
           AVCL+DF PDEAGKQIPCGHVYHESCISSWLTVADCCPLCRC VAGQPPDSTLIRR
Sbjct: 61  AVCLEDFLPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCHVAGQPPDSTLIRR 115

[Close]

BLAST of Pay0020146 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 187.6 bits (475), Expect = 6.2e-44
Identity = 92/119 (77.31%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60
           MAA +V  E T  L + YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVC
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVC 60

Query: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 117
           AVCL+DFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+   STLIRR
Sbjct: 61  AVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Pay0020146 vs. TAIR 10
Match: AT1G68180.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 49  VADFPTVVADVCAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 102
           + D   V   VCA+C ++F   E GK++ C H+YH SCI SWL + + CP+CR
Sbjct: 127 ITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179

[Close]

BLAST of Pay0020146 vs. TAIR 10
Match: AT2G44330.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.1e-10
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 60  CAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR--CLVAGQPPDSTL 114
           CA+C +DF   E+ +++PC H+YH  CI  WLT  + CPLCR    VA    DS L
Sbjct: 96  CAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVELPVASSEDDSGL 151

[Close]

BLAST of Pay0020146 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 60  CAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 111
           CAVC+D+F      KQ+PC HV+H+ C+  WL + + CP+CR  +    PD
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPD 266

[Close]

BLAST of Pay0020146 vs. TAIR 10
Match: AT5G64920.1 (COP1-interacting protein 8 )

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 59  VCAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 102
           VCAVC D     E GK++PCGH YH  CI  WL   + CP+CR
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCR 298

[Close]

BLAST of Pay0020146 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-09
Identity = 35/115 (30.43%), Postives = 51/115 (44.35%), Query Frame = 0


Query: 5   AVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITP--SDSPVADFPTVVAD---- 64
           AV ++    L SPY    L  L +  SG+     S   +     S +   PT+       
Sbjct: 96  AVNSDDNFLLDSPYLHRLLRHLASDNSGSSSSSSSSSSSSLLKSSDIDSIPTIQISSSLL 155

Query: 65  ------------VCAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 102
                       +CAVC +DF   E+ +++PC H+YH  CI  WL+  + CPLCR
Sbjct: 156 CSTDDSDPDSVLLCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

The following BLAST results are available for this feature:

BLAST of Pay0020146 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VHI7	7.9e-10	44.23	E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1...	[more]
P0CH30	3.9e-09	45.10	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q91YL2	1.9e-08	45.83	E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1	[more]
Q8LPN7	1.9e-08	43.14	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9Y4L5	2.5e-08	45.28	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2	[more]

BLAST of Pay0020146 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2P4	1.9e-62	100.00	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4DZX3	1.9e-62	100.00	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
A0A0A0LKR7	1.6e-58	95.69	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 P...	[more]
A0A6J1G511	3.0e-44	77.31	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1DM93	2.5e-35	68.38	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Pay0020146 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901521.1	3.8e-62	100.00	PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo] >KAA0061530.1 RING-H2...	[more]
KAE8651509.1	3.4e-58	95.69	hypothetical protein Csa_019434 [Cucumis sativus]	[more]
XP_004150849.1	3.4e-58	95.69	E3 ubiquitin-protein ligase RNF181 [Cucumis sativus]	[more]
XP_038877422.1	2.9e-49	85.34	E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]	[more]
XP_022946863.1	6.2e-44	77.31	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]

BLAST of Pay0020146 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68180.1	1.6e-10	45.28	RING/U-box superfamily protein	[more]
AT2G44330.1	8.1e-10	46.43	RING/U-box superfamily protein	[more]
AT3G19950.1	1.4e-09	43.14	RING/U-box superfamily protein	[more]
AT5G64920.1	2.4e-09	53.49	COP1-interacting protein 8	[more]
AT3G60080.1	5.2e-09	30.43	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 60..100 e-value: 4.4E-7 score: 39.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 59..101 e-value: 1.5E-11 score: 44.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 60..101 score: 12.754832
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 54..112 e-value: 1.5E-16 score: 61.3
None	No IPR available	PANTHER	PTHR15710:SF74	E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE	coord: 21..104
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 21..104
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 59..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0020146.1	Pay0020146.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity