Pay0020030 (gene) Melon (Payzawat) v1

Overview
NamePay0020030
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm4
Locationchr04: 10545140 .. 10552082 (+)
RNA-Seq ExpressionPay0020030
SyntenyPay0020030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATAAATAATTTGCTGGATATATTATTAGTAAATAGATAATAAATTACGATTTGATTAAGAAATGAGGAGCTACGGGGTATTACGTCCTTTCCTCTTCTTCTTATTAGTATTATTCAAAAAATAGAAAAACAAAAAAAAAAGAAGAAATCGATAGTCTCTGCCTTTCCCTCTCTCGATCTTTCCGTTCGCCCTAGGACCAGCCTCCGCCGTCTCCCTCCCTCGACGTCATCTCTCCTTACCTCTCCATCGCTCTCCTCCGCTCACCATCTCCCTCTTCTGACGACCAGCAACCCACCGGTTCTCCCTCGCGCTCACCGTCTCCCTATCTCCTCCAGCCGACGCCATCACCTGGCGACCGCCATTGGCCGCTCGACTCATCGGAGAGAGCCATCTCGTCGCGCTGCGCCACCATCTGCCACCGCTAGCCTCGCCAAATCTGGAAGTTGAGGTTAGTTTTGGGCTGTCCGGTGAGTTTTGTGGGTTTTTCTTAAAGATCTATGCTACCCTTTAGCCTTTGGCTTCAAATGACTAATTCCTATCACGTTTTGGTATTAGATTGAAGAGTAGCGGTGCCGTTTAATTGCTGTCCAGCGGGTTTTCTTTAAAATTTTGGTACTTAGTAAAGGTGAGAATTATTAAGATGTGAAATAGAGTTTTGGGTAAGGATTTGCTGTTATTTGGGTTTCTTGAGGGTTTTCGATTATCCATCAAGTTCTGACTTTGATTTTGCAATACCCATTACATTTAGTTGTCAGATTTGGAGTCTTTGGAGATTTTAGCCGCTGTCCAGCCTTTAGGAGGATTGTGCCTTTTCGCACACAACTTGGGTTAGATTCTAAGCTTTCTGGGGTGGATTTTGAGTACCCATCCAATTTTAGTGATAACATATAGTAACCCAAAATAGTGGATGCTTGATTTCGAATTTAGAAGGTAGTTAGGATGTTGTCCATTGAAGTTAAGAGTACCTTGCTAAGTTCTTGGGAAGGTTTGGAGTAATTTTATTGGGTTTTTCTAGAGTTCTTAAATACTCATTTAATTCTTGTGTTAATATTGAATAGCCCATGATGTTGAAAGCGAGATTTCGAAGTTAGAAGGTCGTTAGGGTGCTGTCCATTAGAATTAAGGCTACTTTGATAAGTCTGAGCATAATCTTTAGCCATAACGCGTCGCTTTTAAACAAGCTATTGATCCATTGCTATTAAATTGCAAACACTCATTTGCACCTAATAGTCTTATTCTTGCAAGAAGAGATACTTAATCCCAAGTACCATTATCATCTTAGGTGTTCACCTCTCCAATCATCGCGTTGCAATCTTAGGATAAGGGTAAGAGATTTAACAAACGAACATGTAGGAGATGGTAATTGGTCATAAGATATACAAGAAGCAATAGGATAAGGGCAAGAACATACACCTTTATGAAGGGCAATGGGAAGCTCATCTCTTGGTTCTTGATCCAATAACAAGAGTCTTTTGGGACAAAACATTCACCTAGAGGTTGTTGCCGAAGAGAGTAGATTTTAGTTATAGTTGGACGATTAGGGTAGACGTGGGAGGAGATAGATCAAGGGAGGGTGTTGGAAATAGATCAAGGGAGGAGGGAGTTGGAGACGTGAGAGTATAAAGGTAAAGATCCTCACCCTCTCCTTGATTCGTACTATGCAAAGGGATAGTGAAAGGCTTATCATCAAAGAAACTAACGTCTTGCGATACAAAATATCTATTCAAATTTGGATAATAACCTATGTATCCGTTTTGAACACGAGAATAGCCTAAGAAAATGCACTTCAAAGACTTGGGGTCTAACTTTATTTAATGAAGACGAACATCTTAAACAAAACAATTACAACCTAATATTTTAGGCTCAACAAGAAACAATGGTTTTGTTGAAAAGAGAACATGAGAAGGAGTCTGACCTTGAAGAGCAGACGAAGGCATTTGGTTTATAAGAAAACAAGCTGTGGAAGTTGCATCAACCTGAAAATGCTTTGGAACATGCATTTGAAAGGATAATGCCCGTGCAGTTTTAAGAAGATGCCCATTCTTTTGTTTTGCAACCCTATTTTGGGATTGGAGTATCAGCACAAGATGATTGTATGTACAAAGGTACAAATTGAGTGCTTATGAAAAATACTCCTCGACATTATCACATCTCGAGGTTTTAAGCACACACCAAACTGCATTAGAATTTCAACATGGAAATTATAGAAATGAGGAAGTAACTCAAAACAATTTTTTTTAAAATATAACCAAGTCATGCAAGAGTGATCATCTACAAAGGTAACAAAATATAGAAACAGTTTTGATGCCCTTTGTACATACAATCATCTTGTGCTAAGACGATGAAATTCAGCAAATTGATATGAGTCACAATTCAATGAAGACAAGTTATGTAATTGAGGACAAATCATTCTCAAGGTTGAGAGAGATGGATGACCAGGACGACAATAGGCATCAAAAGGAGAAACAACTCTGGATAAGCAACGATTGTTGATGTCGATACTTGGTGATTGTATCAAAACTATGAAGTCCTTCAAATTCATGCCATTTTCCAATAATCTTTTTTGTTACATGATCTTGAAACAAGTAATAGCCAAGATAGAATGAGATGCAACAACTAAGGTCAAAACTAATTTGACTAATAGTGATCAAGTTAAATGACAACGAAGGTAAATGTAGGACAAATGACGAGAAAGGGATTGAGGTGAGATTTATAGTGCCAGATCCAATAACAGAAGACTTTGATCCATGTGCTAGGGTAATACCGGTAATGGATGTAGATGACAAAGTTGTAGAAAATAACTTCGGATTACTTGTCATATGAGCGGTAGCACTGAAGTCTATGACCCATTTTGTAGAAAATAGACAATGATTTATGTTACCTGAATTAGCAACGATTATAATAAGGCACATGCTAATGATGAAGGAGATGCTTTCAACGAGTTTTGGTACTTTTGAGATTTAGTACAGCAACCATGGATAGATTGAGCCTGCAAGTGAACCAAATTAGACATCACTATGGGATCTTGTTAGGCCATAGGATAGTAACAACCACACCAGAAGCCACACCAAATCAGCCAGCCACACCAAACCAAATGAGCAAAAAAACAGCCACAAAATAGATCAAAACAGCTGCAACCCCTGAAACAGTTGACTTTCTTTCAAATATTGTCACTGTTGAATGGATTTCAATGGAACCGAAGGCTCAAACTGATCGGAAACCAAGATCTGAGATGCATCTTACCAATGATAGCCCAAATTGGAACAGAACAACAACAAACTCTAAAATTAAAAGGGTATTTTTTCGAAGAACGTCACACCTGATTATCTAAAGGAACCAAATGCACAAACCAACAGGAAAACACAAATGGAGACGAACCCAGCACAAAATGGACCTCGCATGCACTCCGACGTGTGAGGGATGAGACAACGTCTTTTAGCGGTGTGTGAAACTCACGTGCGGCTTCTTCTGACAAGCGACGAACTCAGATATAGGCATTCCTAAAAACCCTAAATAAAGACCAGTGAATTACAATAAAGGACAAAAGTCTAATAAGCTCCTATAGTTACGTATATACTATAATATGAATATATGATCATCTGGGAACTTACATTCTTTTGGTCCTATTTTTCTACAGGTAGTATCTGCTTCTATTAGTATCTGCTTCTAGTTGTATCTGCTTCGTATCTTTAAAGATGGTATGTTCCCAAACTTGTTTTTTCATCTGTTCCTATTTTTCTTTTTGATCCACGATTAATTTTGCTCGTGTAACTTCAGAGTGTATTTATTCATTTAATGTCACTGATAAATTAAATTATTTCCTTCAAATGCTTGGTTGTCAGCTGTTGTTTCCTTTTTTCCCTTCATGGGTGTGCTCTAATCGATATTTTTTATTGCAGCTTCCTCTTTCCCTCCTTAAGACTGCTCAAGGACACCCCATGGTAAGGGCTTTCTTTCAGTTGCCTTTCTGTTCATACACAGGAGAGCTTACATGCACCTAGAGTAAATTCAAGAGAGAGTATCACATTTGATTGCTACTTTAAAGTTTTGATTGATTTGATATCCAGATAGGTGGGATAATACGTTTCAAATTGAGCCCCTTGAGCTTCTATTATGGTTATTGTTATTATTATTTTGGATTATTTTTTGCTTGGCTAAATCTCTTGTGCCATCCCAGTGATACATGGTGGTTGTATATGGCTTTGCTTTGTCTTGAGCTACTCCAGTTGTTGTCAAGAACTTCTACTCTAGGACTTTGTTTATGTGCTTCTAAAAATGTATAATTTCTGTGTTGCAACAGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATCCATCTTCGGGAAGTCATCTGCACTTCTAAAGTAATGCACTTCTATTTTATGGATGATTTTTTTCTCTTTTGGATTTTTCTTCTTTCTTTAGGAGTTTGAACTTATAATGACCATGTTTTCCAATTGTCAAATGTCAGGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTTATGAAAACTGTTGCCTTTTTTCCTGTTTAATTGTGTGATGTTTGATGCATCAGAGTACCTTACATCTAACATGTGGATGCTAAACAAAAAAGTCAGTTGCCTTAATTTAGTTCTTTTTCCACTTCTGTCACATGCTTCTCAGCTGCATCTCATTTTTATTTCTGGTTTCTAATATTATTTTCTCTCTTCTTTGACTTTTACTCGTACAACTTTGTCATCATCTTTAACTTGTGAATGTGATCTTATCGACATCCACCAAAAAGTTATTTAATAAAACTGTTCTTTTTCTTTCTGGTGATTTAAGTTATATCACTCCCTTCTTGTAATTTGCCTTAACTTTAGTGATTTCTCTAGTTTTTGATAAACTGTTTCAGTATTGTTAGCTCTTTCATACATGCATGGACCTGAGTGTACACTTACAAGCTGTTTGGATTCCTCTCTTGAAAACAACAATTATCCCAACAAAAGAGTAGAAACAGAGGCAGCACTCTCTGATTTACTTATATTCAATAAACACAAAGTGAACAAGGAAATATTAACAGAATGACAGAGAAACAGCAAGGAAATACACACCAAAATAGCCCAGCCTTATCATATGGCTGTCGGCTCCTCCCTAAAAGACAGCAGCCTTTTCCTATATAAACCCATCTCACCAATCCCTAAAATTATTCTATTTATACTCATCATTCGTGGGCCCCACCAGCATCATTCTTTTCTTCATTTCTCTTTCCTAGCTCTGCCCCTGTGAAATTACTTTCTTACCCTTCCTTTTGTGTTGATGAATAATCGGGGGTCTTACACATGCACTCCCAAAATGTTCTATTTCACTTATTTTATTGTTTTTCAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGGTATACTGTTTATGCATTTTATAATATATAATGATTGTCAAATGAAGTAAAAAGGTAAAATGTATTTTGCATTTAGGAAATTTGAAATTGTAAAACCAATTAATTCTTGAAGTTCTCCCAAAATAATAATAATAATAAATTAACTCTTAAATCTTTTCTTTCTGGAATCTTGTACATTATCCATGTTGTAAATCTGAAAAAAGATGGACATTCGATAACATCTCATAAAATACTAAATACATTTGCTAAGGTTTGCATGTATCGGACTCTTGATTGTCCAGAACATCTAATGAGTCTAGATAAACTATGCTATTATAGACTAAGATTAATTTATCCTTTGCCCTTGGTTTCTGACAAGTAACGAAACTGATGCTTTGACACCAAATTTTCAGATAGAAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGAGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCCGGTGCGAACAGAGGTAAACTAAACTATCTTTGTTATTATGAAACTTGAATTTGCTGTTTTAGCTTCCTCATTTGATAACAGTTTTGCTTTTGCTTTTGCTTTTGCCTTTCTATGTCCTGTATAAACTATATCCCTTATCTATTCAATGTTTTCTTCGTTTAATTTTTCAACCCTTAAGAAGACTTGGGCCAAATTTACAAACGAAATACAGGGGTTTCATAAACTATTTCCGTTTTTCAGTTTTCTAAAATTTAGCTTTGACTTCAAAGTTGACTTGGAGTAGGTTAGAAATTAATGGAAAAGGGTTAAATAGAACAGAGTATAAACAAGAAAAATGTTTGTAAAAAAAGAAAAAAAAAACTATAAACAAAAACGTTTACAAGTGGACTTCTTATCTCATCTTATTAATCTTGTTTTTTCTTTATCTTTTCTCTTGACATAGTTGGAGGCAGGGGACGAGGTTGATCAGATTGATATCGGTAACAGATGAAATGGACTAACTACATATGCAAGCTCTGCCCAGTTTTCACGTCGGCAGCCGTGTGATTTCTGTTTTATGCATTTTCTTTTGGTCTGGATTCTTGAGTGAATATTTATGCTGATTGTAGTGCCAGACCTCTGCGAAAGTTGTAAACTAGACAAACGGTTCATTTTAATTAATGGTGTAATTGATTGCAAATTTGGTTTACAGTTTTGGGCATTGGAATGTAGATAGTTTCATGTTTCCAGATGTTTTCTATTGGCCTTAGAGAGGCTGTCATAAATTTAGCCCCACAATTATCTGAAAGTTAAACTAAGATCAAAGTCTCAAGTACTGGGTTGATTGATTAGTACTGTGAGTATAGAGTTCATTTTGATTATCCCACAATTGTTTAGATATTCCTAACAAATATAGCCAATATGCTGTTTTTAATTGCAA

mRNA sequence

GAAATAAATAATTTGCTGGATATATTATTAGTAAATAGATAATAAATTACGATTTGATTAAGAAATGAGGAGCTACGGGGTATTACGTCCTTTCCTCTTCTTCTTATTAGTATTATTCAAAAAATAGAAAAACAAAAAAAAAAGAAGAAATCGATAGTCTCTGCCTTTCCCTCTCTCGATCTTTCCGTTCGCCCTAGGACCAGCCTCCGCCGTCTCCCTCCCTCGACGTCATCTCTCCTTACCTCTCCATCGCTCTCCTCCGCTCACCATCTCCCTCTTCTGACGACCAGCAACCCACCGGTTCTCCCTCGCGCTCACCGTCTCCCTATCTCCTCCAGCCGACGCCATCACCTGGCGACCGCCATTGGCCGCTCGACTCATCGGAGAGAGCCATCTCGTCGCGCTGCGCCACCATCTGCCACCGCTAGCCTCGCCAAATCTGGAAGTTGAGATTGAAGAGTAGCGGTGCCGTTTAATTGCTGTCCAGCGGGTTTTCTTTAAAATTTTGGTACTTAGTAAAGGTAGTATCTGCTTCTATTAGTATCTGCTTCTAGTTGTATCTGCTTCGTATCTTTAAAGATGCTTCCTCTTTCCCTCCTTAAGACTGCTCAAGGACACCCCATGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATCCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGAAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGAGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCCGGTGCGAACAGAGTTGGAGGCAGGGGACGAGGTTGATCAGATTGATATCGGTAACAGATGAAATGGACTAACTACATATGCAAGCTCTGCCCAGTTTTCACGTCGGCAGCCGTGTGATTTCTGTTTTATGCATTTTCTTTTGGTCTGGATTCTTGAGTGAATATTTATGCTGATTGTAGTGCCAGACCTCTGCGAAAGTTGTAAACTAGACAAACGGTTCATTTTAATTAATGGTGTAATTGATTGCAAATTTGGTTTACAGTTTTGGGCATTGGAATGTAGATAGTTTCATGTTTCCAGATGTTTTCTATTGGCCTTAGAGAGGCTGTCATAAATTTAGCCCCACAATTATCTGAAAGTTAAACTAAGATCAAAGTCTCAAGTACTGGGTTGATTGATTAGTACTGTGAGTATAGAGTTCATTTTGATTATCCCACAATTGTTTAGATATTCCTAACAAATATAGCCAATATGCTGTTTTTAATTGCAA

Coding sequence (CDS)

ATGCTTCCTCTTTCCCTCCTTAAGACTGCTCAAGGACACCCCATGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATCCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGAAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGAGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCCGGTGCGAACAGAGTTGGAGGCAGGGGACGAGGTTGA

Protein sequence

MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG
Homology
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BLAST of Pay0020030 vs. ExPASy Swiss-Prot
Match: Q43582 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.6e-58
Identity = 123/150 (82.00%), Postives = 127/150 (84.67%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGR-GREDGPGGRPAKGMGRGFD 120
           +RGNTIKYLRVPDEVIDKVQEE KSR DRKP GVGR R R GR+D   GR  KG+GRG D
Sbjct: 61  VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120

Query: 121 DGAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           DG    + GRGKGGP  K G  R GGRGRG
Sbjct: 121 DG---GAKGRGKGGPSAKSG-GRGGGRGRG 146

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BLAST of Pay0020030 vs. ExPASy Swiss-Prot
Match: Q9LGE6 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.9e-57
Identity = 124/151 (82.12%), Postives = 130/151 (86.09%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEET-KSRADRKPLGVGRGRGRGR-EDGPGGRPAKGMGRGF 120
           IRGNTIKYLRVPDEVIDKVQEET KSR+DR+P GVGRGRGRG     PGGR   G+GRG 
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGR---GIGRGQ 120

Query: 121 DDGAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           DDG     GGRG+GG GGK G  + GGRGRG
Sbjct: 121 DDGGSKGGGGRGRGGIGGK-GGIKGGGRGRG 147

[Close]
BLAST of Pay0020030 vs. ExPASy Swiss-Prot
Match: Q9ZRU9 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN=LSM4 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-56
Identity = 121/150 (80.67%), Postives = 126/150 (84.00%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRG-FD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGRE+G G R  +G GR    
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120

Query: 121 DGAKAASGGRGKGGPGGKPGANRVGGRGRG 150
             AKA    RG+G   GK G    GGRGRG
Sbjct: 121 QVAKAWVEVRGRGASAGKSGGR--GGRGRG 148

[Close]
BLAST of Pay0020030 vs. ExPASy Swiss-Prot
Match: F4K4E3 (Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.7e-53
Identity = 115/149 (77.18%), Postives = 119/149 (79.87%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GA+    GRG+G   GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]
BLAST of Pay0020030 vs. ExPASy Swiss-Prot
Match: Q9QXA5 (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-39
Identity = 90/140 (64.29%), Postives = 102/140 (72.86%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRG-FD 120
           IRG+TIKYLR+PDE+ID V+EE            GRGRG  ++    GR   G GRG F 
Sbjct: 61  IRGSTIKYLRIPDEIIDMVREEAAK---------GRGRGGPQQKQQKGRGMGGAGRGVFG 120

Query: 121 DGAKAASGGRGKGGPGGKPG 140
              +    G G+G P  KPG
Sbjct: 121 GRGRGGIPGAGRGQPEKKPG 131

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BLAST of Pay0020030 vs. ExPASy TrEMBL
Match: A0A1S3BYD6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Pay0020030 vs. ExPASy TrEMBL
Match: A0A6J1CRC5 (U6 snRNA-associated Sm-like protein LSm4 OS=Momordica charantia OX=3673 GN=LOC111013478 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.5e-76
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           G+KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GSKASSGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Pay0020030 vs. ExPASy TrEMBL
Match: A0A0A0K9I4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Pay0020030 vs. ExPASy TrEMBL
Match: A0A0A0L3Q6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 244

[Close]
BLAST of Pay0020030 vs. ExPASy TrEMBL
Match: A0A6J1J2N4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC111480701 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETK+RADRKP GVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Pay0020030 vs. NCBI nr
Match: XP_008454536.1 (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454538.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454539.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 295.4 bits (755), Expect = 2.7e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Pay0020030 vs. NCBI nr
Match: XP_011653886.2 (probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740554.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740555.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740556.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740557.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >KAE8649735.1 hypothetical protein Csa_012390 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-75
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKA++GGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKASTGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Pay0020030 vs. NCBI nr
Match: XP_022143617.1 (probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia])

HSP 1 Score: 292.7 bits (748), Expect = 1.7e-75
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           G+KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GSKASSGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Pay0020030 vs. NCBI nr
Match: XP_011659113.1 (sm-like protein LSM4 [Cucumis sativus] >KGN44471.1 hypothetical protein Csa_016908 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 3.0e-75
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Pay0020030 vs. NCBI nr
Match: XP_022926288.1 (sm-like protein LSM4 isoform X1 [Cucurbita moschata] >XP_022981642.1 sm-like protein LSM4 isoform X1 [Cucurbita maxima] >XP_022981643.1 sm-like protein LSM4 isoform X1 [Cucurbita maxima] >XP_023523329.1 sm-like protein LSM4 isoform X1 [Cucurbita pepo subsp. pepo] >KAG7037244.1 hypothetical protein SDJN02_00867 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291.6 bits (745), Expect = 3.9e-75
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETK+RADRKP GVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Pay0020030 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 207.6 bits (527), Expect = 6.9e-54
Identity = 115/149 (77.18%), Postives = 119/149 (79.87%), Query Frame = 0 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GA+    GRG+G   GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]
BLAST of Pay0020030 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-12
Identity = 48/138 (34.78%), Postives = 75/138 (54.35%), Query Frame = 0 

Query: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 62  RGNTIKYLRVPD-----EVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGR 121
           RG+ ++++ +PD      +  ++    K ++    LGVGRGRG  R     G+PA G GR
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKS--SSLGVGRGRGAMR-----GKPAAGPGR 126

Query: 122 GFDDGAKAASGGRGKGGP 135
           G        +GGRG   P
Sbjct: 127 G--------TGGRGAVPP 128

[Close]
BLAST of Pay0020030 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-11
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 0 

Query: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 62  RGNTIKYLRVPDEVID-KVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 121
           RG+ +++L +PD + +  + ++ + +     LGVGRGRG           AKG GRG   
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMR-------AKGTGRG--- 125

Query: 122 GAKAASGGRGKGGP 135
                 GGRG   P
Sbjct: 127 ----TGGGRGAVPP 125

[Close]
BLAST of Pay0020030 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-08
Identity = 40/101 (39.60%), Postives = 52/101 (51.49%), Query Frame = 0 

Query: 17  VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD--E 76
           +ELKNG   +G +   D  MN HL+ V  T K G     +    +RGN I+Y  +PD   
Sbjct: 17  IELKNGTIVHGTITGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 76

Query: 77  VIDKVQEET------KSRADRKPLGVGRGRGRGREDGPGGR 110
           +   + E+T      K  A + P G GRGRGRGR  G GGR
Sbjct: 77  LETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 116

[Close]
BLAST of Pay0020030 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 48.5 bits (114), Expect = 5.3e-06
Identity = 40/111 (36.04%), Postives = 53/111 (47.75%), Query Frame = 0 

Query: 17  VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 76
           +ELKNG   +G + +           D  MN HL+ V  T K G     +    +RGN I
Sbjct: 17  IELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 76

Query: 77  KYLRVPD--EVIDKVQEET------KSRADRKPLGVGRGRGRGREDGPGGR 110
           +Y  +PD   +   + E+T      K  A + P G GRGRGRGR  G GGR
Sbjct: 77  RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 126

The following BLAST results are available for this feature:
BLAST of Pay0020030 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q435822.6e-5882.00Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 P... [more]
Q9LGE62.9e-5782.12Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic... [more]
Q9ZRU92.5e-5680.67Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN... [more]
F4K4E39.7e-5377.18Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1[more]
Q9QXA51.2e-3964.29U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 S... [more]
BLAST of Pay0020030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BYD61.3e-76100.00U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929... [more]
A0A6J1CRC58.5e-7697.99U6 snRNA-associated Sm-like protein LSm4 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A0A0K9I41.4e-7599.33U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3... [more]
A0A0A0L3Q61.4e-7599.33U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3... [more]
A0A6J1J2N41.9e-7598.66U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
BLAST of Pay0020030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008454536.12.7e-76100.00PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_... [more]
XP_011653886.21.3e-7598.66probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_03174055... [more]
XP_022143617.11.7e-7597.99probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia][more]
XP_011659113.13.0e-7599.33sm-like protein LSM4 [Cucumis sativus] >KGN44471.1 hypothetical protein Csa_0169... [more]
XP_022926288.13.9e-7598.66sm-like protein LSM4 isoform X1 [Cucurbita moschata] >XP_022981642.1 sm-like pro... [more]
BLAST of Pay0020030 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27720.16.9e-5477.18Small nuclear ribonucleoprotein family protein [more]
AT1G20580.13.8e-1234.78Small nuclear ribonucleoprotein family protein [more]
AT1G76300.15.5e-1132.84snRNP core protein SMD3 [more]
AT4G02840.12.6e-0839.60Small nuclear ribonucleoprotein family protein [more]
AT4G02840.25.3e-0636.04Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..71
e-value: 1.4E-20
score: 84.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..70
e-value: 6.9E-17
score: 60.9
NoneNo IPR availableGENE3D2.30.30.100coord: 1..83
e-value: 1.7E-37
score: 128.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..109
NoneNo IPR availablePANTHERPTHR23338:SF42SM-LIKE PROTEIN LSM4coord: 1..137
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..137
IPR034101Sm-like protein Lsm4CDDcd01723LSm4coord: 2..77
e-value: 1.34157E-61
score: 182.005
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0020030.1Pay0020030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
biological_process GO:0033962 P-body assembly
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006396 RNA processing
cellular_component GO:0000932 P-body
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0017070 U6 snRNA binding