Pay0019675 (gene) Melon (Payzawat) v1

Overview


Name	Pay0019675
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Transcription factor UPBEAT1-like
Location	chr07: 19573900 .. 19574668 (-)
RNA-Seq Expression	Pay0019675
Synteny	Pay0019675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCAATTCTTCTTCGTCCATTCTTCCGCTTCCTCTCTCTCTCTCTCTAAAACTGGCGCATAAAATGAGTTCAATTGGGAAGAAACACAGAATTCCATGGAAGCAATCAACGAGAAGAACGGTTTTGCCATCTCGGAAGGTCAGAGGTGGAAGAAACCACCAAAATGGCGGAATGGCGTGCGCATCAGACCTATCGGCGAAGCTTGAGTCGCTGCAGAGCCTCATTCCGAGTCGGAGTGACGAAGAAGGAGTGCGGAGGGCGGAGGATTTGTTTAAACAGACGGCGGATTACATCGTGCTGTTGAAAAGTCAAGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCGGATGACAGAGAAAATGCCGTATCCTCGTAGGTTAGATTGTTGTTAAATCAAGGAAATAGGAAGAATTGAGAAAATAAGAAAGCGGAAAGGGTCGATAGCTTTCTGGAATTTTCGTTTTGGTATGCCGTGTTTGGTTGAATATCAGAAAGTGGAGGTAATTTGGTGATCTAATAGCCAACTCTTAGAATTTTTTTCTTTATTTTTCTCTTTCAAATATCCGATACATGAATACAAAGTTGGTTTGTGCTCCAAATCAATGGGTCCTGGTTTTGTATTAAGGAAGAAAATTAGATTGGAAGCTGGGAGGAAGTTGAAATGAGTATCTCTTTTAGATTGAGATTTGAAAAATATGTTTATAGAAATAGAAACCATTTTTTTTTTATTATTATTTAAATTCTTTTTTATAAAAGCAGTTTA

mRNA sequence

GCCCAATTCTTCTTCGTCCATTCTTCCGCTTCCTCTCTCTCTCTCTCTAAAACTGGCGCATAAAATGAGTTCAATTGGGAAGAAACACAGAATTCCATGGAAGCAATCAACGAGAAGAACGGTTTTGCCATCTCGGAAGGTCAGAGGTGGAAGAAACCACCAAAATGGCGGAATGGCGTGCGCATCAGACCTATCGGCGAAGCTTGAGTCGCTGCAGAGCCTCATTCCGAGTCGGAGTGACGAAGAAGGAGTGCGGAGGGCGGAGGATTTGTTTAAACAGACGGCGGATTACATCGTGCTGTTGAAAAGTCAAGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCGGATGACAGAGAAAATGCCGTATCCTCGTAGGTTAGATTGTTGTTAAATCAAGGAAATAGGAAGAATTGAGAAAATAAGAAAGCGGAAAGGGTCGATAGCTTTCTGGAATTTTCGTTTTGGTATGCCGTGTTTGGTTGAATATCAGAAAGTGGAGGTAATTTGGTGATCTAATAGCCAACTCTTAGAATTTTTTTCTTTATTTTTCTCTTTCAAATATCCGATACATGAATACAAAGTTGGTTTGTGCTCCAAATCAATGGGTCCTGGTTTTGTATTAAGGAAGAAAATTAGATTGGAAGCTGGGAGGAAGTTGAAATGAGTATCTCTTTTAGATTGAGATTTGAAAAATATGTTTATAGAAATAGAAACCATTTTTTTTTTATTATTATTTAAATTCTTTTTTATAAAAGCAGTTTA

Coding sequence (CDS)

ATGAGTTCAATTGGGAAGAAACACAGAATTCCATGGAAGCAATCAACGAGAAGAACGGTTTTGCCATCTCGGAAGGTCAGAGGTGGAAGAAACCACCAAAATGGCGGAATGGCGTGCGCATCAGACCTATCGGCGAAGCTTGAGTCGCTGCAGAGCCTCATTCCGAGTCGGAGTGACGAAGAAGGAGTGCGGAGGGCGGAGGATTTGTTTAAACAGACGGCGGATTACATCGTGCTGTTGAAAAGTCAAGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCGGATGACAGAGAAAATGCCGTATCCTCGTAG

Protein sequence

MSSIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS

Homology

[Close]

BLAST of Pay0019675 vs. ExPASy TrEMBL
Match: A0A5D3BZU8 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00200 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.3e-50
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MSSIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE 60
           MSSIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE 60

Query: 61  EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 106
           EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS
Sbjct: 61  EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Pay0019675 vs. ExPASy TrEMBL
Match: A0A5A7UT08 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001870 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MSSIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE 60
           MS IGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE
Sbjct: 1   MSPIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE 60

Query: 61  EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 106
           EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS
Sbjct: 61  EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Pay0019675 vs. ExPASy TrEMBL
Match: A0A2P5AW87 (Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294590 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.2e-13
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 13  KQSTRRTVLPSRKVR-----GGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEGVRRAE 72
           K + RRT    RK R       R+  NGG  C+S +S KLE+L+ LIP    E  + + +
Sbjct: 9   KTNVRRTRRRGRKTRSRDCVARRSCNNGGGTCSSKVSGKLEALKKLIPGHEGE--IVKTD 68

Query: 73  DLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVS 105
            LF+QTADYIVLL++QV +LQ+LIEFYGS D E+AVS
Sbjct: 69  QLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Pay0019675 vs. ExPASy TrEMBL
Match: A0A2P5ED64 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_207440 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.2e-13
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   MSSIGKKHRIPWKQSTRRTVLPSRKVRGG-----RNHQNGGMACASDLSAKLESLQSLIP 60
           MSS  K  +I    + RRT    RK R       R+  NGG  C+S +S KLE+L+ LIP
Sbjct: 1   MSSTTKDQKI----NVRRTRRRGRKTRSRDCVALRSCNNGGGTCSSKVSDKLEALKKLIP 60

Query: 61  SRSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVS 105
               E  + + + LF+QTADYIVLL++QV +LQ+LIEFYGS D E+AVS
Sbjct: 61  GHEGE--IVKTDQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Pay0019675 vs. ExPASy TrEMBL
Match: A0A5N6QW57 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 7   KHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEGVRRA 66
           + ++  + STRR  L +R  R  R+  NGG  CA  +S KLE+L++LIP+ + E    + 
Sbjct: 16  RRKLTRRTSTRRR-LQARPCRARRSFNNGGRTCAK-VSDKLEALKNLIPAHNGE--TVKP 75

Query: 67  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAV 104
           + LFK+TA+YIVLL++QV +LQRL+EFYGS    N V
Sbjct: 76  DQLFKETAEYIVLLRTQVVILQRLVEFYGSSGMNNVV 108

[Close]

BLAST of Pay0019675 vs. NCBI nr
Match: TYK04615.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 6.8e-50
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MSSIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE 60
           MSSIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE 60

Query: 61  EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 106
           EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS
Sbjct: 61  EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Pay0019675 vs. NCBI nr
Match: KAA0056655.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 2.6e-49
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MSSIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE 60
           MS IGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE
Sbjct: 1   MSPIGKKHRIPWKQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDE 60

Query: 61  EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 106
           EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS
Sbjct: 61  EGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Pay0019675 vs. NCBI nr
Match: KAG6607102.1 (hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 5.2e-26
Identity = 68/99 (68.69%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 12  WKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEG-VRRA 71
           WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+
Sbjct: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62

Query: 72  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 106
           E+LF++TADYIVLLK+QVFVLQRLIEFYGSD+RENAVS+
Sbjct: 63  EELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101

[Close]

BLAST of Pay0019675 vs. NCBI nr
Match: KAG7036793.1 (hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-21
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 12  WKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEG-VRRA 71
           WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+
Sbjct: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62

Query: 72  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 106
           E+LF++TADYI      VFVLQRLIEFYGSD+RENAVS+
Sbjct: 63  EELFQETADYI------VFVLQRLIEFYGSDERENAVSA 95

[Close]

BLAST of Pay0019675 vs. NCBI nr
Match: PON83472.1 (hypothetical protein TorRG33x02_207440 [Trema orientale])

HSP 1 Score: 84.3 bits (207), Expect = 6.6e-13
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   MSSIGKKHRIPWKQSTRRTVLPSRKVRGG-----RNHQNGGMACASDLSAKLESLQSLIP 60
           MSS  K  +I    + RRT    RK R       R+  NGG  C+S +S KLE+L+ LIP
Sbjct: 1   MSSTTKDQKI----NVRRTRRRGRKTRSRDCVALRSCNNGGGTCSSKVSDKLEALKKLIP 60

Query: 61  SRSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVS 105
               E  + + + LF+QTADYIVLL++QV +LQ+LIEFYGS D E+AVS
Sbjct: 61  GHEGE--IVKTDQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Pay0019675 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 39/98 (39.80%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 20  VLPSRKVRGGRNHQ----NGGMACASDLSAKLESLQSLIP--------SRSD-----EEG 79
           +L +++ RGGR       N   +     S KL++L+SL+P        SR D     +  
Sbjct: 3   ILKTQRSRGGRRTSKKFGNRRTSGGEKFSEKLQALKSLLPPPSKMTEQSRQDAYVEEDSS 62

Query: 80  VRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRE 101
           V   E LF++TADYIV L+ QV VLQ+LIE YGS D++
Sbjct: 63  VGETEQLFQETADYIVRLRGQVVVLQKLIEIYGSSDQK 100

[Close]

BLAST of Pay0019675 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 6.4e-06
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 34  NGGMACASDLSAKLESLQSLIPSRSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEF 93
           NG       +  KL +L+SL+P   +  G    E+LF++TA+YIV L++QV VL++LIE 
Sbjct: 30  NGSSDGGKTVMEKLLALKSLLPPPVNVGG-GETEELFQETAEYIVKLRTQVVVLKKLIEI 89

Query: 94  Y--GSDDRENAV 104
           Y   SD +++ V
Sbjct: 90  YDNSSDQKKDVV 100

[Close]

BLAST of Pay0019675 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 40.8 bits (94), Expect = 7.9e-04
Identity = 22/80 (27.50%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 13 KQSTRRTVLPSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEGVRRAEDLFKQ 72
          +Q  RR ++    +R  ++ +     C + +  ++++L+ L+P+    EG+   + LF+Q
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRA-IHRRVKTLKELVPNTKTSEGL---DGLFRQ 78

Query: 73 TADYIVLLKSQVFVLQRLIE 93
          TADYI+ L+ +V V+Q +++
Sbjct: 79 TADYILALEMKVKVMQTMVQ 94

The following BLAST results are available for this feature:

BLAST of Pay0019675 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0019675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZU8	3.3e-50	100.00	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UT08	1.3e-49	99.05	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A2P5AW87	3.2e-13	50.52	Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=Pan...	[more]
A0A2P5ED64	3.2e-13	48.62	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_207440 PE=4 SV...	[more]
A0A5N6QW57	1.8e-11	46.39	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1	[more]

BLAST of Pay0019675 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04615.1	6.8e-50	100.00	transcription factor UPBEAT1-like [Cucumis melo var. makuwa]	[more]
KAA0056655.1	2.6e-49	99.05	transcription factor UPBEAT1-like [Cucumis melo var. makuwa]	[more]
KAG6607102.1	5.2e-26	68.69	hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036793.1	3.0e-21	63.64	hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyro...	[more]
PON83472.1	6.6e-13	48.62	hypothetical protein TorRG33x02_207440 [Trema orientale]	[more]

BLAST of Pay0019675 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39240.1	1.3e-09	39.80	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G29370.1	6.4e-06	40.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G47270.1	7.9e-04	27.50	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR33124:SF70	SUBFAMILY NOT NAMED	coord: 11..101
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 11..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0019675.1	Pay0019675.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0005488	binding