Pay0019586 (gene) Melon (Payzawat) v1

Overview


Name	Pay0019586
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	light-harvesting complex-like protein OHP1, chloroplastic
Location	chr04: 32467823 .. 32468429 (-)
RNA-Seq Expression	Pay0019586
Synteny	Pay0019586

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGTCCGTGCCAATAACAGCAGGGCTCGTCCCTCTTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTACGCTCTCTATCCTCTTCAAATTTGTGAACTTTTTTCCCATTACTGTTTCACCTGTTGAAAAAATGGTTTACATCTCAAAAGCTTGAATAAATCCAGAATAATACATTCATGGGGGCTTGTGAATTACCTATTCATTTCTGTTTTGAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGGTGAGGTTTTCTTTTCTTCTTAATATGAAGAAAACTTTCTATCTTGTACCTTTACTATCCATGTTTACGGGTTTTATCTGTCTGATTTTTCAGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

mRNA sequence

ATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGTCCGTGCCAATAACAGCAGGGCTCGTCCCTCTTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

Coding sequence (CDS)

ATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGTCCGTGCCAATAACAGCAGGGCTCGTCCCTCTTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

Protein sequence

MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL

Homology

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BLAST of Pay0019586 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 48  VQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQV 107
           V  AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILNK IL++
Sbjct: 38  VVRAAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILEL 97

Query: 108 IGVDVGKGLDLPL 121
           IGV++GKGLDLPL
Sbjct: 98  IGVEIGKGLDLPL 110

[Close]

BLAST of Pay0019586 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.4e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

[Close]

BLAST of Pay0019586 vs. ExPASy TrEMBL
Match: A0A1S3B5V9 (high-light-induced protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486373 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.4e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

[Close]

BLAST of Pay0019586 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.6e-51
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120

[Close]

BLAST of Pay0019586 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 101/121 (83.47%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60
           MASSS +L SSL PARA T N+QDGR  LFQIG SVRANNSRAR  FRVQ AAK PAGVE
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIG-SVRANNSRARVPFRVQ-AAKLPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELIL+K ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLP 119

[Close]

BLAST of Pay0019586 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.5e-40
Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60
           MASS+ IL SSL PARA   ++QDGR  LFQ+G SVRANN RAR  FRVQ AAKPPAGVE
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQ-AAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILNK ILQVIGVD+GKGLDLP
Sbjct: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119

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BLAST of Pay0019586 vs. NCBI nr
Match: XP_008442523.1 (PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo] >KAA0044105.1 high-light-induced protein [Cucumis melo var. makuwa] >TYK25033.1 high-light-induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

[Close]

BLAST of Pay0019586 vs. NCBI nr
Match: XP_004137791.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN58853.1 hypothetical protein Csa_001588 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-50
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120

[Close]

BLAST of Pay0019586 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-42
Identity = 104/121 (85.95%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60
           MASSS IL SSL PARA   +QQDGR  LFQIG SVRANNSR+R  FRVQ AAKPPAGVE
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIG-SVRANNSRSRVPFRVQ-AAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 119

[Close]

BLAST of Pay0019586 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 6.6e-41
Identity = 101/121 (83.47%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60
           MASSS +L SSL PARA T N+QDGR  LFQIG SVRANNSRAR  FRVQ AAK PAGVE
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIG-SVRANNSRARVPFRVQ-AAKLPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELIL+K ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLP 119

[Close]

BLAST of Pay0019586 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.1 bits (440), Expect = 7.3e-40
Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60
           MASS+ IL SSL PARA   ++QDGR  LFQ+G SVRANN RAR  FRVQ AAKPPAGVE
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQ-AAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILNK ILQVIGVD+GKGLDLP
Sbjct: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119

[Close]

BLAST of Pay0019586 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 110.5 bits (275), Expect = 9.2e-25
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 48  VQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQV 107
           V  AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILNK IL++
Sbjct: 38  VVRAAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILEL 97

Query: 108 IGVDVGKGLDLPL 121
           IGV++GKGLDLPL
Sbjct: 98  IGVEIGKGLDLPL 110

The following BLAST results are available for this feature:

BLAST of Pay0019586 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81208	1.3e-23	73.97	Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Pay0019586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRS8	6.4e-58	100.00	High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B5V9	6.4e-58	100.00	high-light-induced protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348637...	[more]
A0A0A0LAI0	7.6e-51	90.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1	[more]
A0A6J1CV10	3.2e-41	83.47	light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia...	[more]
A0A6J1J0W8	3.5e-40	81.82	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX...	[more]

BLAST of Pay0019586 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442523.1	1.3e-57	100.00	PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo] >KAA0044105....	[more]
XP_004137791.1	1.6e-50	90.83	light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN...	[more]
XP_038905156.1	2.0e-42	85.95	light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]	[more]
XP_022145630.1	6.6e-41	83.47	light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]	[more]
XP_022934608.1	7.3e-40	81.82	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >...	[more]

BLAST of Pay0019586 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02120.1	9.2e-25	73.97	one helix protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..117
None	No IPR available	PANTHER	PTHR14154:SF51	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTIC	coord: 1..117
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 64..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0019586.1	Pay0019586.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane