Pay0019509 (gene) Melon (Payzawat) v1

Overview


Name	Pay0019509
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	serine/arginine-rich splicing factor SC35
Location	chr01: 1769467 .. 1774230 (+)
RNA-Seq Expression	Pay0019509
Synteny	Pay0019509

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTCTTTCTTCAAGGAGTTTTCTTCTCCATCTATCTTCTCTAACCCTAACCCTAATCTTCTTCCTCTTCCTTGCACCAACATGTCTCACTTTGGAAGGTCTGGTCCTCCAGATATTACAGATACCTATTCGCTTCTCGTGCTCAACATCACCTTCCGTGCGTCTATCTCTCTCTCTCTTTCTTTCATTTATTGTCTGGTTCTGTATCTTATTCAGTTCCCACTCGGATTTTAATGTGGTTTTGTAGGTACCACTGCGGATGACCTCTACCCGCTTTTCCATAAGTATGGGAAGGTTGTTGATATCTTCATCCCCAGAGATCGAAGGTATAATTCTCTTATCTGTTGCGTTTCTATATCCCTTTTCTTCTTCTTCTTTTTATTTTTTTTATATTATGGAATTTGTTGGATTTATGTAAGAGATGATTGATATCTTTATGTATATTATATATATAATAGCTGGGAAGAGTTTCTTGTTAGTTAGATTGAACGTTTAGGGGTTTAGGATTGAAGTGATTTCCTTTTTATTGATTTTCGTCTGGTTCTTATGGAATCAGTTGTACGTGACGGTGAAATGATATTCTTCATTCAACTTAAATGCTGCTTGGACTTAGTTGGGGATTTTTTGGCTCCTCTGTTTATTCATTTTTTATTGGGAATACTTTATTCTCGTTTTGATTATTTTGTTATGTTATATTGTGGTTCAGGACTGGTGATTCCAGAGGCTTTGCATTTGTGCGTTACAAATATGCAGATGAAGCCCAGAAAGCAGTGGAGAGGCTAGATGGTACACCAGCTACTTTTTTTTTTTTGGTTTTTGTTTTTTTTTGTCTCCTGTTTGATTTTGTTATTGCCCTCTCCATGTGCAAGTAATTTGTGGATATGAGTTACAAGGGGAATGCTTGATACTTTTGTTTGAGGAGAGAAGGTTGATTATTGTTAGGGCGTTATTCAAATCAGTTTGGGTTTAGAAGTTCAAATTTTTCTGAAATTGATGCAGTCACTTCATTGTTATTTCTGGTTTTGAATTTCAGTTATGCCTCTATTCCTCACCGTTTGATAAGTTCTTAATGTAGTTGGCTCGGGGTACTAATCTGCTGCATGTTAATTTGAAAACGGATATATATTTATATATATTTTGATTCTGTTATATTCCAGGCACTATGGTTGATGGACGAGAGATAACTGTTCAGTTTGCTAAATATGGTCCAAATGCAGAAAGGATGTGAGTAATGAAGTAGTGGTTTTTCGCAATAAGTTGTCATGTTTACGCTTGACGTTTTAACTTCAGATATATTTGTTTTGCTAATCCATATTATATCCATGACTAAATATGCTTTTAGTCACAAAGGGAAGATCAGCGAAGCATTTCCCAAGTCAAGATACAGGTCTAGAAGTCGAAGTCCAAGGAGACGGTAATTTTCTCCTCCACATTCACAGGAAATTTCTTTTAAGATGCTGTTTTTATTTTTAATTTTTTATATTTTTTTTAAAATTCAGATTGAATATTTGTTATCCTTGTCCTTGAAGAATCTAGTTTTGTCATTGTTGTTCCTTAATGGAATTATTATTTCACTAGCTTTAGATGTCAAGGGAAAAATCTCCTGTTGGCGTAGGATATTCGAAAAAATGATGCAGCCACAATTTTTGAACCCTTAGATTACTGTGAAACTGTTTGTGCTGTGGTTTATTGTTTACTTTGGCAAAGTTTCGTATCTGCTATCTCAGATAGAAGGTTCAAAGATCTTGCATCCATTGACCTTCATTTTCTAGAGTTGCTATGGCATGTTATTTAACATGAGATGCCATAATTGTGGCAACGTGAAATATTTTAAGATCTAAAAGGAGATTGTAGTAGTGTATTGCACTCTATATAATATTGCTAGGAGTAGGTAGTGGCGCTGAAACCTTTTTCTTTCATGGATCCAGGTTTTGTCCATTTTTAAAGCCTCTTATTATTTTGAAGTCACTTATTTGAATTCAGTACTGGCTAATGTAGTCCATTTATATTTTGATGTTCCCCAAAAATCAAATTACTTACTGTAGTTTCTTACTTTCAGATATCGGGATGATTACAGAGACAGGGATTATAGGAGGAGAAGTAGAAGCAGAAGCAGAAGCCGAAGCTTGGACAGGAGTGATCGTGATAGGCGTGGTAGAGAAAGGGAGAGGGAAAGAGACCATCGCAGACGAAGCCGGAGCATTAGTCCTAGGCGACCTAGTCCTGATTACTCCAAGGGAAGGGGAAGAGGACGCTATGATGATGAGCGAAGAAGTCGTAGTGTTAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGACAGGTTGTGAAGTTGTAATTTTTATCCAATTAGACAGAAGTTGGGAATTTTATAACTAATAATCTTTATCTCTTTGGGTAAAAGTGCGGATTGGGGAATTTTATTTCTAACCAGTCATTGTTTTATATGCTACAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGAAGGAGTCCATCTCCTCGAAGGAGCCTCTCTCCTCGTAGGAGTCCATCTCCCAGGGATGAAAGTCCTGAAAGAAATGGTAATGGTGGTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCGAGAGGGCGACCTGCCGACTCACGAAGTCCATCCCCACAAAATTCAGATGATGTGAGTTGCTTTATGACTTACTTTTTTTGATTAGACTGGACTTGGTTTAAGTAGTTAACTATTCGCTTGCTTATGTTGACAGAAGTGAATACGGATGGGAGGAGAACTATGGACATAACCGAACAGGCAGGAATGAATGCTTTGAGGACTTGTTGATTAAAAATGTTATCAGACTATAAATTCTAGTTTTGGTAGGACTTTCCTATGGTGTTCAATTCTCATATATTGAGCTTCATGTTCCTATCTACTATCTTGTATCAGTTTGATACTTTTTACCTCTGCAGTCTGTATCCTTATTTCCAGTCATAGGTTATAGCTTCGGGACATGTTCTTCCTTTATATTTCTGCTTCTCTACTCTGTAGTACCAGTACTATGTTTTGAGCAATTGTGGTGTCTTTTTCTTTTTCCTTGTATTTTTTTAAATTTATTTGAGCCATTCTTATTCATCATGAATCCTCTATTGGATTTTATAGTTATGTTCGGGGTAAGAGTGACTGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTGTTTCTATGTGATAGATGGGTGTTCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGACTTTATCAGTATGATTTGTCTATGAAGTATGATGTTGCTGTGGGAAGTTTCTTAACTAATATTCACTGGATAAAATTGTTGGTAAGGTTTTTGGTCACGTTTAAATGTTTTTTAAAAACTTAATAATGCTTTAGGATTTGATGTTTGACCTGATTATCCATTCTGGTCTATCCAAGTTTTGAAAGCACTTTCACCCGCAAGGAGATCTAGAGGCCTTGATATATAGGTTTGACCCACCTATGTTGATCGATTTTTTTTAACGCATAGCTGATGATGCATTTGAGAGGTGTATTGATTGATTTTAATGGTGAAAGTTGGTTGAAGATAATTTAGCTACAGGTTTGAACTTTTAGCCATCGTAACAAAAGTTTTTAGTTTTCTATGTTATTTGAAGGGGGTGGCTTCAAACTCACAGGTTTACTATCCCAAACATTTAGATCAATCTCTTGCTGCTTGATGTGGTGACTGACTGTATTGTAGCTTTCGGATTACACAATTGGTGCTGTGGTGTTTGATAGCAGATACGTTTGTTGATGTACGATAGACATGAGTTCGATTGGCTGTTGCTGCCCTTGTGGGGGGTGAGACTGGCAATGATGCTTCAGTTGCTCGGCAATGGCTGTATCAATGCTTGCTTTCCTTTAAATATAAGGGTCTGCATGTATAGTGGCTTAACATCTCCTGTAAGAAAATTTATTTATGAAGAATTATAATATCGATTTGCAAAATTCGGTTCCATTGCTTACTTTGTTTCTGATTTTGGTGAATACGGGGATGGCTACTTGCTTGCTTTTAATCTGTTGTTTTCTGTAACTAGTTTTGAACTTTGAAATATTGCCCCTCTGATTTTTTTGCCTGCTGCACGATTGATTGATTGATTGAACTCATGAGATCAGGGCTTCGTGTATATATATATATATATATATATTATATTAGATTCTCCATAGTCCATTCTGAGACCAGGACGAGGACTCTATAATATATATTCTATATATATTCCATCTGCTCTTTATGTCCACTCCTTTTTTATGATTGATTGAACACAATCTCGGGGGTGGTGTATATACAATATTGGTTTTTAAGTAGTGTGTGTATATACATTAATTTTGAAGTACAATTGAGAGGATGATGAGACTAAAACTTCAATGTTTTCTTTTTATCCAAACAAAATGAGAACATTTGTAAGAGTAGTACTGGACAGGAAATTTTGATGCATCGCCAGATATGTACTTTCTTATTTGTTTGATGAACGTTAAGCAACGTTGGGTGACCAGAGCCAACCACCACCTCCAAAGGGGTAAATTGGAGTATCAATTGAAGGTGTCTACTCCATTTCATTCTCCATAGTTTTCATTTTATGAACACCAGGACAGGGATTCTATACGGTGAATTTGCAGTAATGGGGAATGGGTTCTTGGTGTCCATTAGACTCACAAGCTGGCTGCTGTGCAGCTGCCTTAGTTTTCATAACTAATGGTAATCATTTTCATACTGTTTTCTTCCT

mRNA sequence

AGTTCTTTCTTCAAGGAGTTTTCTTCTCCATCTATCTTCTCTAACCCTAACCCTAATCTTCTTCCTCTTCCTTGCACCAACATGTCTCACTTTGGAAGGTCTGGTCCTCCAGATATTACAGATACCTATTCGCTTCTCGTGCTCAACATCACCTTCCGTACCACTGCGGATGACCTCTACCCGCTTTTCCATAAGTATGGGAAGGTTGTTGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCCAGAGGCTTTGCATTTGTGCGTTACAAATATGCAGATGAAGCCCAGAAAGCAGTGGAGAGGCTAGATGGCACTATGGTTGATGGACGAGAGATAACTGTTCAGTTTGCTAAATATGGTCCAAATGCAGAAAGGATTCACAAAGGGAAGATCAGCGAAGCATTTCCCAAGTCAAGATACAGGTCTAGAAGTCGAAGTCCAAGGAGACGATATCGGGATGATTACAGAGACAGGGATTATAGGAGGAGAAGTAGAAGCAGAAGCAGAAGCCGAAGCTTGGACAGGAGTGATCGTGATAGGCGTGGTAGAGAAAGGGAGAGGGAAAGAGACCATCGCAGACGAAGCCGGAGCATTAGTCCTAGGCGACCTAGTCCTGATTACTCCAAGGGAAGGGGAAGAGGACGCTATGATGATGAGCGAAGAAGTCGTAGTGTTAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGACAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGAAGGAGTCCATCTCCTCGAAGGAGCCTCTCTCCTCGTAGGAGTCCATCTCCCAGGGATGAAAGTCCTGAAAGAAATGGTAATGGTGGTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCGAGAGGGCGACCTGCCGACTCACGAAGTCCATCCCCACAAAATTCAGATGATAAGTGAATACGGATGGGAGGAGAACTATGGACATAACCGAACAGGCAGGAATGAATGCTTTGAGGACTTGTTGATTAAAAATGTTATCAGACTATAAATTCTAGTTTTGTTATGTTCGGGGTAAGAGTGACTGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTGTTTCTATGTGATAGATGGGTGTTCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGACTTTATCAGTATGATTTGTCTATGAAGTATGATGTTGCTGTGGGAAGTTTCTTAACTAATATTCACTGGATAAAATTGTTGGTAAGGTTTTTGGTCACGTTTAAATGTTTTTTAAAAACTTAATAATGCTTTAGGATTTGATGTTTGACCTGATTATCCATTCTGGTCTATCCAAGTTTTGAAAGCACTTTCACCCGCAAGGAGATCTAGAGGCCTTGATATATAGGTTTGACCCACCTATGTTGATCGATTTTTTTTAACGCATAGCTGATGATGCATTTGAGAGGTGTATTGATTGATTTTAATGGTGAAAGTTGGTTGAAGATAATTTAGCTACAGGTTTGAACTTTTAGCCATCGTAACAAAAGTTTTTAGTTTTCTATGTTATTTGAAGGGGGTGGCTTCAAACTCACAGGTTTACTATCCCAAACATTTAGATCAATCTCTTGCTGCTTGATGTGGTGACTGACTGTATTGTAGCTTTCGGATTACACAATTGGTGCTGTGGTGTTTGATAGCAGATACGTTTGTTGATGTACGATAGACATGAGTTCGATTGGCTGTTGCTGCCCTTGTGGGGGGTGAGACTGGCAATGATGCTTCAGTTGCTCGGCAATGGCTGTATCAATGCTTGCTTTCCTTTAAATATAAGGGTCTGCATGTATAGTGGCTTAACATCTCCTGTAAGAAAATTTATTTATGAAGAATTATAATATCGATTTGCAAAATTCGGTTCCATTGCTTACTTTGTTTCTGATTTTGGTGAATACGGGGATGGCTACTTGCTTGCTTTTAATCTGTTGTTTTCTGTAACTAGTTTTGAACTTTGAAATATTGCCCCTCTGATTTTTTTGCCTGCTGCACGATTGATTGATTGATTGAACTCATGAGATCAGGGCTTCGTGTATATATATATATATATATATATTATATTAGATTCTCCATAGTCCATTCTGAGACCAGGACGAGGACTCTATAATATATATTCTATATATATTCCATCTGCTCTTTATGTCCACTCCTTTTTTATGATTGATTGAACACAATCTCGGGGGTGGTGTATATACAATATTGGTTTTTAAGTAGTGTGTGTATATACATTAATTTTGAAGTACAATTGAGAGGATGATGAGACTAAAACTTCAATGTTTTCTTTTTATCCAAACAAAATGAGAACATTTGTAAGAGTAGTACTGGACAGGAAATTTTGATGCATCGCCAGATATGTACTTTCTTATTTGTTTGATGAACGTTAAGCAACGTTGGGTGACCAGAGCCAACCACCACCTCCAAAGGGGTAAATTGGAGTATCAATTGAAGGTGTCTACTCCATTTCATTCTCCATAGTTTTCATTTTATGAACACCAGGACAGGGATTCTATACGGTGAATTTGCAGTAATGGGGAATGGGTTCTTGGTGTCCATTAGACTCACAAGCTGGCTGCTGTGCAGCTGCCTTAGTTTTCATAACTAATGGTAATCATTTTCATACTGTTTTCTTCCT

Coding sequence (CDS)

ATGTCTCACTTTGGAAGGTCTGGTCCTCCAGATATTACAGATACCTATTCGCTTCTCGTGCTCAACATCACCTTCCGTACCACTGCGGATGACCTCTACCCGCTTTTCCATAAGTATGGGAAGGTTGTTGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCCAGAGGCTTTGCATTTGTGCGTTACAAATATGCAGATGAAGCCCAGAAAGCAGTGGAGAGGCTAGATGGCACTATGGTTGATGGACGAGAGATAACTGTTCAGTTTGCTAAATATGGTCCAAATGCAGAAAGGATTCACAAAGGGAAGATCAGCGAAGCATTTCCCAAGTCAAGATACAGGTCTAGAAGTCGAAGTCCAAGGAGACGATATCGGGATGATTACAGAGACAGGGATTATAGGAGGAGAAGTAGAAGCAGAAGCAGAAGCCGAAGCTTGGACAGGAGTGATCGTGATAGGCGTGGTAGAGAAAGGGAGAGGGAAAGAGACCATCGCAGACGAAGCCGGAGCATTAGTCCTAGGCGACCTAGTCCTGATTACTCCAAGGGAAGGGGAAGAGGACGCTATGATGATGAGCGAAGAAGTCGTAGTGTTAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGACAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGAAGGAGTCCATCTCCTCGAAGGAGCCTCTCTCCTCGTAGGAGTCCATCTCCCAGGGATGAAAGTCCTGAAAGAAATGGTAATGGTGGTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCGAGAGGGCGACCTGCCGACTCACGAAGTCCATCCCCACAAAATTCAGATGATAAGTGA

Protein sequence

MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK

Homology

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BLAST of Pay0019509 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.7e-69
Identity = 194/316 (61.39%), Postives = 212/316 (67.09%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAVERLDG +VDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRG 180
                               RSRSPRRR RDDYR++DYR+RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSP 240
           R  E++RDHRRR+RS   R  SPD  K R RGRYD+E RS S S S S  R RS  S SP
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSP 240

Query: 241 GRRSP---------SPRRSPSPRRSLSPR------RSPSPRDESPERNGNGGGRSPTSRS 278
            + SP         S  RSPSPRRSLSPR       SPS ++ SPER  N   RSP+  S
Sbjct: 241 QKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN--ERSPSPGS 299

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BLAST of Pay0019509 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-27
Identity = 108/239 (45.19%), Postives = 137/239 (57.32%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +  S Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRR           RRRSRSRSRSRS  RS R R  R + R R  R RSRS S       
Sbjct: 123 PRR-----------RRRSRSRSRSRSRSRS-RSRYSRSKSRSRT-RSRSRSTS------- 182

Query: 184 YSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 241
               + R     + +S SVSRSRSR RSRS     P     S R S S  RS SP +SP
Sbjct: 183 ----KSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP---PTSKRESNSRSRSKSPPKSP 213

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BLAST of Pay0019509 vs. ExPASy Swiss-Prot
Match: Q06A98 (Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.8e-27
Identity = 107/239 (44.77%), Postives = 136/239 (56.90%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRR           RRRSRSRSRSRS  RS R R  R + R R  R RSRS S       
Sbjct: 123 PRR-----------RRRSRSRSRSRSRSRS-RSRYSRSKSRSRT-RSRSRSTS------- 182

Query: 184 YSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 241
               + R     + +S SVSRSRSR RSRS     P     S R S S  RS SP +SP
Sbjct: 183 ----KSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP---PASKRESKSRSRSKSPPKSP 213

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BLAST of Pay0019509 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-26
Identity = 107/239 (44.77%), Postives = 136/239 (56.90%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRR           RRRSRSRSRSRS  RS R R  R + R R  R RSRS S       
Sbjct: 123 PRR-----------RRRSRSRSRSRSRSRS-RSRYSRSKSRSRT-RSRSRSTS------- 182

Query: 184 YSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 241
               + R     + +S SVSRSRSR RSRS     P     S R S S  RS SP +SP
Sbjct: 183 ----KSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP---PVSKRESKSRSRSKSPPKSP 213

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BLAST of Pay0019509 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-26
Identity = 107/239 (44.77%), Postives = 136/239 (56.90%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRR           RRRSRSRSRSRS  RS R R  R + R R  R RSRS S       
Sbjct: 123 PRR-----------RRRSRSRSRSRSRSRS-RSRYSRSKSRSRT-RSRSRSTS------- 182

Query: 184 YSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 241
               + R     + +S SVSRSRSR RSRS     P     S R S S  RS SP +SP
Sbjct: 183 ----KSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP---PVSKRESKSRSRSKSPPKSP 213

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BLAST of Pay0019509 vs. ExPASy TrEMBL
Match: A0A1S3C0I4 (serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC103495427 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 8.9e-143
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 283

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BLAST of Pay0019509 vs. ExPASy TrEMBL
Match: A0A0A0K7C0 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.7e-139
Identity = 276/283 (97.53%), Postives = 282/283 (99.65%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRSRSRSLD++DRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRS+SRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPR+ESPERNGNG GRSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK 283

[Close]

BLAST of Pay0019509 vs. ExPASy TrEMBL
Match: A0A6J1EIV3 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=LOC111434683 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 3.5e-123
Identity = 260/293 (88.74%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRYRDDYRDRDYRR  RSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--------- 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSPSPRRS SPR         
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 ---RSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
              RSLSPRRSPSPR ESPERNG+ GGRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGD-GGRSPTPRSVSPRGQPADSRSPSPQNSD 290

[Close]

BLAST of Pay0019509 vs. ExPASy TrEMBL
Match: A0A6J1CKN2 (serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC111012175 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.3e-122
Identity = 257/283 (90.81%), Postives = 265/283 (93.64%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGT+VDGREITVQFAKYGPNAERIHKGKISEAF K RYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFTKPRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRYRDD RDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDNRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDER--RSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRR 240
           DYSKGRGRGRYDDER  RSRS SRS+SRG+SRSVDS SPG      RRS SPRRSLSP+R
Sbjct: 181 DYSKGRGRGRYDDERRSRSRSCSRSQSRGQSRSVDSASPG------RRSASPRRSLSPQR 240

Query: 241 SPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
           SPSPR ESP RNG+ GGR+PT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPSPRGESPVRNGD-GGRTPTPRSVSPRGQPADSRSPSPQNSD 276

[Close]

BLAST of Pay0019509 vs. ExPASy TrEMBL
Match: A0A6J1JE82 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LOC111486086 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.6e-121
Identity = 258/299 (86.29%), Postives = 268/299 (89.63%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRYRD+YRDRDYRR  RSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDNYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--------- 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSPSPRRS SPR         
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 ---------RSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
                    RSLSPRRSPSPR ESPERNG+ GGRSPT RSVSPRG+ ADSRSPSPQNSD
Sbjct: 241 SPQRSLSPQRSLSPRRSPSPRGESPERNGD-GGRSPTPRSVSPRGQSADSRSPSPQNSD 296

[Close]

BLAST of Pay0019509 vs. NCBI nr
Match: XP_008455209.1 (PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo])

HSP 1 Score: 516.2 bits (1328), Expect = 1.8e-142
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 283

[Close]

BLAST of Pay0019509 vs. NCBI nr
Match: XP_004136874.2 (serine/arginine-rich splicing factor SC35 [Cucumis sativus] >KGN43716.1 hypothetical protein Csa_017162 [Cucumis sativus])

HSP 1 Score: 504.6 bits (1298), Expect = 5.6e-139
Identity = 276/283 (97.53%), Postives = 282/283 (99.65%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRSRSRSLD++DRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRS+SRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPR+ESPERNGNG GRSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK 283

[Close]

BLAST of Pay0019509 vs. NCBI nr
Match: XP_038888048.1 (serine/arginine-rich splicing factor SC35 [Benincasa hispida])

HSP 1 Score: 488.4 bits (1256), Expect = 4.1e-134
Identity = 271/283 (95.76%), Postives = 276/283 (97.53%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRY+SRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYKSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRYRDDYRDRDYRRRSRSRSRSRS DRSDRDRRGRE+ERER++RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSFDRSDRDRRGREKEREREYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDER--RSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRR 240
           DYSKGRGRGRYDDER  RSRS SRSRSRGRSRSVDSGSPGR+SPSPRRSPSPRRSLSPRR
Sbjct: 181 DYSKGRGRGRYDDERRSRSRSRSRSRSRGRSRSVDSGSPGRQSPSPRRSPSPRRSLSPRR 240

Query: 241 SPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
           SPSPR  SPERNGNGGGRSPTSRSVSPRGRP DSRSPSPQNSD
Sbjct: 241 SPSPRGGSPERNGNGGGRSPTSRSVSPRGRPTDSRSPSPQNSD 283

[Close]

BLAST of Pay0019509 vs. NCBI nr
Match: XP_022927926.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771.1 Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451.1 bits (1159), Expect = 7.3e-123
Identity = 260/293 (88.74%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRYRDDYRDRDYRR  RSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--------- 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSPSPRRS SPR         
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 ---RSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
              RSLSPRRSPSPR ESPERNG+ GGRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGD-GGRSPTPRSVSPRGQPADSRSPSPQNSD 290

[Close]

BLAST of Pay0019509 vs. NCBI nr
Match: KAG7022543.1 (Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 449.5 bits (1155), Expect = 2.1e-122
Identity = 259/293 (88.40%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRYRDDYRDRDYRR  RSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSP------------SPRRSP 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSP            SPRRS 
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSL 240

Query: 241 SPRRSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
           SP+RSLSPRRSPSPR ESPERNG+ GGRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGD-GGRSPTPRSVSPRGQPADSRSPSPQNSD 290

[Close]

BLAST of Pay0019509 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 263.1 bits (671), Expect = 2.6e-70
Identity = 194/316 (61.39%), Postives = 212/316 (67.09%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAVERLDG +VDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRG 180
                               RSRSPRRR RDDYR++DYR+RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSP 240
           R  E++RDHRRR+RS   R  SPD  K R RGRYD+E RS S S S S  R RS  S SP
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSP 240

Query: 241 GRRSP---------SPRRSPSPRRSLSPR------RSPSPRDESPERNGNGGGRSPTSRS 278
            + SP         S  RSPSPRRSLSPR       SPS ++ SPER  N   RSP+  S
Sbjct: 241 QKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN--ERSPSPGS 299

[Close]

BLAST of Pay0019509 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 263.1 bits (671), Expect = 2.6e-70
Identity = 194/316 (61.39%), Postives = 212/316 (67.09%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAVERLDG +VDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRG 180
                               RSRSPRRR RDDYR++DYR+RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSP 240
           R  E++RDHRRR+RS   R  SPD  K R RGRYD+E RS S S S S  R RS  S SP
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSP 240

Query: 241 GRRSP---------SPRRSPSPRRSLSPR------RSPSPRDESPERNGNGGGRSPTSRS 278
            + SP         S  RSPSPRRSLSPR       SPS ++ SPER  N   RSP+  S
Sbjct: 241 QKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN--ERSPSPGS 299

[Close]

BLAST of Pay0019509 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 75.5 bits (184), Expect = 7.8e-14
Identity = 103/285 (36.14%), Postives = 131/285 (45.96%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTG------------DSRGFAFVRY 76
           SLLV N+      +DL   F ++G V DI++PRD  TG            D RGF FV++
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96

Query: 77  KYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRR 136
               +A  A   +DG ++ GRE+TV FA+   N ++  + +  E    SR+R R R+P R
Sbjct: 97  MDPADAADAKHHMDGYLLLGRELTVVFAE--ENRKKPTEMRARERGGGSRFRDRRRTPPR 156

Query: 137 RYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDH------RRRSRSISPRRP 196
            Y                    S  RS   RRGR R R  D+      R   RSISPR  
Sbjct: 157 YY--------------------SRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREE 216

Query: 197 SPDYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--RSLSP 256
             D  +   R    D  R RS++  R + RS S        RSP   RSPSP+  RS+SP
Sbjct: 217 RYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSP 276

Query: 257 RRSPS---PRDESPERNGNGGGRSPT-SRSVSPRGRPAD-SRSPS 277
           RRS S    R  SP R+       P  SRS SP G   D  RSPS
Sbjct: 277 RRSISRSPRRSRSPRRSRRSYTPEPARSRSQSPHGGQYDEDRSPS 299

[Close]

BLAST of Pay0019509 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-13
Identity = 106/273 (38.83%), Postives = 130/273 (47.62%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVER 76
           SLLV N+      +DL   F ++G V DI++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRYRDDYRDRDYR 136
           +DG ++ GRE+TV FA+                      R +    R R R   R RD R
Sbjct: 97  MDGYLLLGRELTVVFAE--------------------ENRKKPTEMRARERGGGRFRD-R 156

Query: 137 RRSRSRSRSRSLDRSDRDRRGRERERERDH------RRRSRSISPRRPSPDYSKGRGRGR 196
           RR+  R  SRS  RS   RRGR R R  D+      R   RSISPR    D  +   R  
Sbjct: 157 RRTPPRYYSRS--RSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSP 216

Query: 197 YDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--RSLSPRRSPS---PRDE 256
             D  R RS++  R + RS S        RSP   RSPSP+  RS+SPRRS S    R  
Sbjct: 217 ASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSR 276

Query: 257 SPERNGNGGGRSPT-SRSVSPRGRPAD-SRSPS 277
           SP R+       P  SRS SP G   D  RSPS
Sbjct: 277 SPRRSRRSYTPEPARSRSQSPHGGQYDEDRSPS 286

[Close]

BLAST of Pay0019509 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-12
Identity = 104/279 (37.28%), Postives = 140/279 (50.18%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F ++G V DI++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDLPT--SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKS-RYRSRSRSP 123
           +    +A +A  ++DG ++ GRE+TV FA+   N ++  + +  +   +S R++ R RSP
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRKKPTEMRTRDRGGRSNRFQDRRRSP 146

Query: 124 RRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSPDY 183
            R  R        RR  RSRSRSR  +                 R +SRS+SP+      
Sbjct: 147 PRYSRSP----PPRRGRRSRSRSRGYNSPPA------------KRHQSRSVSPQ------ 206

Query: 184 SKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGR---RSPSPRRSPSPR--RSLSPR 243
                  RY+ E   RS SRS     SR V SGSPGR    S SPRRS SPR  RS +P 
Sbjct: 207 -----DRRYEKE---RSYSRSPPHNGSR-VRSGSPGRVKSHSRSPRRSVSPRKNRSYTPE 261

Query: 244 RSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPS 277
           ++   R +SP    +   RSPT     PRG     RSPS
Sbjct: 267 QA---RSQSPVPRQS---RSPTP---VPRGAQNGDRSPS 261

The following BLAST results are available for this feature:

BLAST of Pay0019509 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	3.7e-69	61.39	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	2.0e-27	45.19	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q06A98	7.8e-27	44.77	Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1	[more]
Q3MHR5	1.0e-26	44.77	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	1.0e-26	44.77	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]

BLAST of Pay0019509 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0I4	8.9e-143	100.00	serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC10349542...	[more]
A0A0A0K7C0	2.7e-139	97.53	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV...	[more]
A0A6J1EIV3	3.5e-123	88.74	serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1CKN2	2.3e-122	90.81	serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1JE82	5.6e-121	86.29	serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Pay0019509 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455209.1	1.8e-142	100.00	PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo]	[more]
XP_004136874.2	5.6e-139	97.53	serine/arginine-rich splicing factor SC35 [Cucumis sativus] >KGN43716.1 hypothet...	[more]
XP_038888048.1	4.1e-134	95.76	serine/arginine-rich splicing factor SC35 [Benincasa hispida]	[more]
XP_022927926.1	7.3e-123	88.74	serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771....	[more]
KAG7022543.1	2.1e-122	88.40	Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of Pay0019509 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	2.6e-70	61.39	ortholog of human splicing factor SC35	[more]
AT5G64200.2	2.6e-70	61.39	ortholog of human splicing factor SC35	[more]
AT1G55310.3	7.8e-14	36.14	SC35-like splicing factor 33	[more]
AT1G55310.1	5.0e-13	38.83	SC35-like splicing factor 33	[more]
AT3G13570.1	1.1e-12	37.28	SC35-like splicing factor 30A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 6.6E-25 score: 98.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..88 e-value: 1.1E-20 score: 73.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.297218
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 17..90 e-value: 0.0057 score: 25.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..104 e-value: 1.5E-27 score: 98.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..200
None	No IPR available	PANTHER	PTHR23147:SF161	OS08G0486200 PROTEIN	coord: 1..282
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..282
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0019509.1	Pay0019509.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding