Pay0019460 (gene) Melon (Payzawat) v1

Overview


Name	Pay0019460
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	ribosomal RNA processing protein 1 homolog
Location	chr12: 3930855 .. 3931441 (+)
RNA-Seq Expression	Pay0019460
Synteny	Pay0019460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGGTGGTTGAAGGAGATCAAAATTTCACTTCATTAGTCATGCTTTTGGCATTCTTCAACAAGGCGACTCGAGACAAGACCCTTCGTGTAATCATTAAGATATGGCTTCCAACTCAAATGAGCCTTTTCGTAGGCGATATGAAAAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCATACCAACAAGGTTCCTGTTCAATCTAAGATTATTAATCGTCTTGCTTCTCTACTCCTCCATCTTAACCTATCGTTCACTTTTCAATACTTCTCTGTTTTCTTGTCACTCTGCATTGTGAATGGGTCGAGATTGATGCACTTAGGTTAGATAAGTTTTATCTTTTGATTCGTAGGTTTGTGCACCAATTTTTTGCTTCGTTGAAGAAGCATTCTTGGGATTTGGAACTGTGTTGTCGCTTGGTTCAAGTTTTGGAGGAAAGGGTGTTTTTCACTAATGATAAGTTTCATGGGAATGGTGTTAGTTATCAAATTGCTTCTGTGTTTCTTAAGGAACTTAGGCATTTCTTCCCCTTTGGAAGAAAATTGTCGATGTCCTGTTCAAGCCATTCCTTCTTTCAATGA

mRNA sequence

ATGGAGGAGGTGGTTGAAGGAGATCAAAATTTCACTTCATTAGTCATGCTTTTGGCATTCTTCAACAAGGCGACTCGAGACAAGACCCTTCGTGTAATCATTAAGATATGGCTTCCAACTCAAATGAGCCTTTTCGTAGGCGATATGAAAAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCATACCAACAAGGTTCCTGTTCAATCTAAGATTATTAATCGTCTTGCTTCTCTACTCCTCCATCTTAACCTATCGTTCACTTTTCAATACTTCTCTATTGATGCACTTAGGTTAGATAAGTTTTATCTTTTGATTCGTAGGTTTGTGCACCAATTTTTTGCTTCGTTGAAGAAGCATTCTTGGGATTTGGAACTGTGTTGTCGCTTGGTTCAAGTTTTGGAGGAAAGGGTGTTTTTCACTAATGATAAGTTTCATGGGAATGGTGTTAGTTATCAAATTGCTTCTGTGTTTCTTAAGGAACTTAGGCATTTCTTCCCCTTTGGAAGAAAATTGTCGATGTCCTGTTCAAGCCATTCCTTCTTTCAATGA

Coding sequence (CDS)

ATGGAGGAGGTGGTTGAAGGAGATCAAAATTTCACTTCATTAGTCATGCTTTTGGCATTCTTCAACAAGGCGACTCGAGACAAGACCCTTCGTGTAATCATTAAGATATGGCTTCCAACTCAAATGAGCCTTTTCGTAGGCGATATGAAAAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCATACCAACAAGGTTCCTGTTCAATCTAAGATTATTAATCGTCTTGCTTCTCTACTCCTCCATCTTAACCTATCGTTCACTTTTCAATACTTCTCTATTGATGCACTTAGGTTAGATAAGTTTTATCTTTTGATTCGTAGGTTTGTGCACCAATTTTTTGCTTCGTTGAAGAAGCATTCTTGGGATTTGGAACTGTGTTGTCGCTTGGTTCAAGTTTTGGAGGAAAGGGTGTTTTTCACTAATGATAAGTTTCATGGGAATGGTGTTAGTTATCAAATTGCTTCTGTGTTTCTTAAGGAACTTAGGCATTTCTTCCCCTTTGGAAGAAAATTGTCGATGTCCTGTTCAAGCCATTCCTTCTTTCAATGA

Protein sequence

MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCVWHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSIDALRLDKFYLLIRRFVHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKELRHFFPFGRKLSMSCSSHSFFQ

Homology

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BLAST of Pay0019460 vs. ExPASy Swiss-Prot
Match: Q9Y7M6 (Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC9B6.07 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-12
Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 0


Query: 18  LAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCVWHTNKVPVQSKIINRLA 77
           LA  ++ TRDK L  + + +L  +      D  KLWKGLFYC+W  +K   Q K+ + LA
Sbjct: 11  LAANDRKTRDKALESLQR-FLSQKKKFERLDFLKLWKGLFYCMWMADKPLYQQKLSDNLA 70

Query: 78  SL--LLHLNLSFTFQ----------YFSIDALRLDKFYLLIRRFVHQFFASLKKHSWDL- 137
           +L  ++ ++    FQ          +  ID LR DKFYLL+RRF    F  ++  S    
Sbjct: 71  ALVPIVWIDNRILFQSTFWETMGREWTGIDILRTDKFYLLMRRFCAAAFRDIQTRSKTAL 130

Query: 138 --ELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKELRHFFP 168
             ++     Q+  +  F T +    NG+ + +A ++ +ELR  +P
Sbjct: 131 LDKVVAEYNQMWMDGPFNTENLAFPNGILFHLADIWTEELRKVYP 174

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BLAST of Pay0019460 vs. ExPASy Swiss-Prot
Match: Q14684 (Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens OX=9606 GN=RRP1B PE=1 SV=3)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 51/162 (31.48%), Postives = 77/162 (47.53%), Query Frame = 0


Query: 18  LAFFNKATRD---KTLRVIIKIWLPTQMSLF-VGDMKKLWKGLFYCVWHTNKVPVQSKII 77
           LA   K  RD   K LR  I +    +   F   ++ K+WKGLFYC+W  ++  +Q ++ 
Sbjct: 16  LASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEPLLQEELA 75

Query: 78  NRLASLLLHLNLSFTFQYF-------------SIDALRLDKFYLLIRRFVHQFFASLKKH 137
           N +A L+  +N S     F              ID LRLDK+Y+LIR  + Q F  LK++
Sbjct: 76  NTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYMLIRLVLRQSFEVLKRN 135

Query: 138 SWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKEL 163
            W+       + VL + V     +   NGV +    ++L EL
Sbjct: 136 GWEESRIKVFLDVLMKEVLCPESQ-SPNGVRFHFIDIYLDEL 176

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BLAST of Pay0019460 vs. ExPASy Swiss-Prot
Match: Q91YK2 (Ribosomal RNA processing protein 1 homolog B OS=Mus musculus OX=10090 GN=Rrp1b PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 48/164 (29.27%), Postives = 83/164 (50.61%), Query Frame = 0


Query: 18  LAFFNKATRDKTLRVIIKIWLPTQMSLFVG-----DMKKLWKGLFYCVWHTNKVPVQSKI 77
           LA   K  RD+ +R  ++ +L  +     G     ++ K+WKGLFYC+W  ++  +Q ++
Sbjct: 16  LASSEKGVRDRAVRK-LRQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPLLQEEL 75

Query: 78  INRLASLLLHLNLSFTFQYF--------------SIDALRLDKFYLLIRRFVHQFFASLK 137
            N + S L+H+  S   QY                ID L+LDK+Y+LIR  + Q F  LK
Sbjct: 76  AN-IISQLIHVVNSLEAQYLFIQTFWQTMNREWQGIDKLQLDKYYMLIRLVLRQSFEVLK 135

Query: 138 KHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKEL 163
           +++W+       + +L + +  + +    NGV   +  V+L+EL
Sbjct: 136 RNAWEESQITLFLDILMKEI-LSPESQSPNGVRTHLIDVYLEEL 176

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BLAST of Pay0019460 vs. ExPASy Swiss-Prot
Match: P56183 (Ribosomal RNA processing protein 1 homolog A OS=Mus musculus OX=10090 GN=Rrp1 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 49/168 (29.17%), Postives = 81/168 (48.21%), Query Frame = 0


Query: 14  LVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVG-----DMKKLWKGLFYCVWHTNKVPV 73
           L   LA   + TRD+ LR + K ++  +     G     ++ K+WKGLFYC+W  +K P+
Sbjct: 13  LAQRLAGNEQVTRDRALRKLRK-YIEARSQRATGGFTPDELLKVWKGLFYCMWMQDK-PL 72

Query: 74  QSKIINRLASLLLHLNLSFTFQ--------------YFSIDALRLDKFYLLIRRFVHQFF 133
           Q + + R  + L+H   +   Q              +  ID LRLDKFY+L+R  + +  
Sbjct: 73  QQEELGRTIAQLVHAFHTTEAQHQFLKAFWQTMIREWVGIDRLRLDKFYMLMRMVLSESL 132

Query: 134 ASLKKHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKEL 163
            ++K   WD     +L+++L   +    D    +GV      +FL+EL
Sbjct: 133 KAVKARGWDERQIEQLLELLTTEI-LNPDSQAPSGVKSHFLEIFLEEL 177

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BLAST of Pay0019460 vs. ExPASy Swiss-Prot
Match: P56182 (Ribosomal RNA processing protein 1 homolog A OS=Homo sapiens OX=9606 GN=RRP1 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 48/166 (28.92%), Postives = 80/166 (48.19%), Query Frame = 0


Query: 14  LVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVG----DMKKLWKGLFYCVWHTNKVPVQ 73
           L   LA   + TRD+ +R + K  +        G    ++ K+WKGLFYC+W  +K  +Q
Sbjct: 13  LAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKPLLQ 72

Query: 74  SKIINRLASLL--------LHLNLSFTFQ-----YFSIDALRLDKFYLLIRRFVHQFFAS 133
            ++   ++ L+         HL L   +Q     +  ID LRLDKFY+L+R  +++    
Sbjct: 73  EELGRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYMLMRMVLNESLKV 132

Query: 134 LKKHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKEL 163
           LK   W+      L+++L   +   + +   NGV      +FL+EL
Sbjct: 133 LKMQGWEERQIEELLELLMTEILHPSSQ-APNGVKSHFIEIFLEEL 177

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BLAST of Pay0019460 vs. ExPASy TrEMBL
Match: A0A5A7SRW1 (Ribosomal RNA processing protein 1-like protein B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00390 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.3e-93
Identity = 178/197 (90.36%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQ SLFVGDMKKLW GLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQTSLFVGDMKKLWNGLFYCV 60

Query: 61  WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRR 120
           WHTNKVPVQSKIINRLASLLLHLNL FTFQYFS            IDALRLDKFYLLIRR
Sbjct: 61  WHTNKVPVQSKIINRLASLLLHLNLLFTFQYFSVFLVTMHCEWVEIDALRLDKFYLLIRR 120

Query: 121 FVHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFH--GNGVSYQIASVFLKELRHFF 180
           FVHQFFA LKKHSWDLELCCRLVQVLE+RVFFTNDKFH  GNGVSYQIASVFLKELRHFF
Sbjct: 121 FVHQFFALLKKHSWDLELCCRLVQVLEQRVFFTNDKFHGNGNGVSYQIASVFLKELRHFF 180

Query: 181 PFGRKLSMSCSSHSFFQ 184
           PFGRKLSMSCSSHSFFQ
Sbjct: 181 PFGRKLSMSCSSHSFFQ 197

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BLAST of Pay0019460 vs. ExPASy TrEMBL
Match: E5GCP3 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.3e-93
Identity = 178/197 (90.36%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQ SLFVGDMKKLW GLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQTSLFVGDMKKLWNGLFYCV 60

Query: 61  WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRR 120
           WHTNKVPVQSKIINRLASLLLHLNL FTFQYFS            IDALRLDKFYLLIRR
Sbjct: 61  WHTNKVPVQSKIINRLASLLLHLNLLFTFQYFSVFLVTMHCEWVEIDALRLDKFYLLIRR 120

Query: 121 FVHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFH--GNGVSYQIASVFLKELRHFF 180
           FVHQFFA LKKHSWDLELCCRLVQVLE+RVFFTNDKFH  GNGVSYQIASVFLKELRHFF
Sbjct: 121 FVHQFFALLKKHSWDLELCCRLVQVLEQRVFFTNDKFHGNGNGVSYQIASVFLKELRHFF 180

Query: 181 PFGRKLSMSCSSHSFFQ 184
           PFGRKLSMSCSSHSFFQ
Sbjct: 181 PFGRKLSMSCSSHSFFQ 197

[Close]

BLAST of Pay0019460 vs. ExPASy TrEMBL
Match: A0A1S3C5Z1 (ribosomal RNA processing protein 1 homolog A-like OS=Cucumis melo OX=3656 GN=LOC103497248 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.3e-93
Identity = 178/197 (90.36%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQ SLFVGDMKKLW GLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQTSLFVGDMKKLWNGLFYCV 60

Query: 61  WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRR 120
           WHTNKVPVQSKIINRLASLLLHLNL FTFQYFS            IDALRLDKFYLLIRR
Sbjct: 61  WHTNKVPVQSKIINRLASLLLHLNLLFTFQYFSVFLVTMHCEWVEIDALRLDKFYLLIRR 120

Query: 121 FVHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFH--GNGVSYQIASVFLKELRHFF 180
           FVHQFFA LKKHSWDLELCCRLVQVLE+RVFFTNDKFH  GNGVSYQIASVFLKELRHFF
Sbjct: 121 FVHQFFALLKKHSWDLELCCRLVQVLEQRVFFTNDKFHGNGNGVSYQIASVFLKELRHFF 180

Query: 181 PFGRKLSMSCSSHSFFQ 184
           PFGRKLSMSCSSHSFFQ
Sbjct: 181 PFGRKLSMSCSSHSFFQ 197

[Close]

BLAST of Pay0019460 vs. ExPASy TrEMBL
Match: A0A5A7U008 (Ribosomal RNA processing protein 1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00010 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.5e-71
Identity = 143/184 (77.72%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRR 120
           WH +KVPVQS++INRLASLLLHL+LS   QYFS            IDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FVHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKELRHFFPF 173
           F+HQFFA LKKHSWDLELC  LVQVLEERVFFT+DKFHGNGV+YQIASVFL+ELR F P 
Sbjct: 121 FLHQFFALLKKHSWDLELCRCLVQVLEERVFFTDDKFHGNGVNYQIASVFLEELRPFLPL 180

[Close]

BLAST of Pay0019460 vs. ExPASy TrEMBL
Match: A0A1S3BR64 (ribosomal RNA processing protein 1 homolog OS=Cucumis melo OX=3656 GN=LOC103492297 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.5e-71
Identity = 143/184 (77.72%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRR 120
           WH +KVPVQS++INRLASLLLHL+LS   QYFS            IDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FVHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKELRHFFPF 173
           F+HQFFA LKKHSWDLELC  LVQVLEERVFFT+DKFHGNGV+YQIASVFL+ELR F P 
Sbjct: 121 FLHQFFALLKKHSWDLELCRCLVQVLEERVFFTDDKFHGNGVNYQIASVFLEELRPFLPL 180

[Close]

BLAST of Pay0019460 vs. NCBI nr
Match: XP_008457582.1 (PREDICTED: ribosomal RNA processing protein 1 homolog A-like [Cucumis melo] >ADN34242.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0033932.1 ribosomal RNA processing protein 1-like protein B isoform X2 [Cucumis melo var. makuwa] >TYK02896.1 ribosomal RNA processing protein 1-like protein B isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 349.4 bits (895), Expect = 1.9e-92
Identity = 178/197 (90.36%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQ SLFVGDMKKLW GLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQTSLFVGDMKKLWNGLFYCV 60

Query: 61  WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRR 120
           WHTNKVPVQSKIINRLASLLLHLNL FTFQYFS            IDALRLDKFYLLIRR
Sbjct: 61  WHTNKVPVQSKIINRLASLLLHLNLLFTFQYFSVFLVTMHCEWVEIDALRLDKFYLLIRR 120

Query: 121 FVHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFH--GNGVSYQIASVFLKELRHFF 180
           FVHQFFA LKKHSWDLELCCRLVQVLE+RVFFTNDKFH  GNGVSYQIASVFLKELRHFF
Sbjct: 121 FVHQFFALLKKHSWDLELCCRLVQVLEQRVFFTNDKFHGNGNGVSYQIASVFLKELRHFF 180

Query: 181 PFGRKLSMSCSSHSFFQ 184
           PFGRKLSMSCSSHSFFQ
Sbjct: 181 PFGRKLSMSCSSHSFFQ 197

[Close]

BLAST of Pay0019460 vs. NCBI nr
Match: XP_008450828.1 (PREDICTED: ribosomal RNA processing protein 1 homolog [Cucumis melo] >KAA0047556.1 ribosomal RNA processing protein 1-like protein [Cucumis melo var. makuwa] >TYK14953.1 ribosomal RNA processing protein 1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 277.7 bits (709), Expect = 7.1e-71
Identity = 143/184 (77.72%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRR 120
           WH +KVPVQS++INRLASLLLHL+LS   QYFS            IDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FVHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKELRHFFPF 173
           F+HQFFA LKKHSWDLELC  LVQVLEERVFFT+DKFHGNGV+YQIASVFL+ELR F P 
Sbjct: 121 FLHQFFALLKKHSWDLELCRCLVQVLEERVFFTDDKFHGNGVNYQIASVFLEELRPFLPL 180

[Close]

BLAST of Pay0019460 vs. NCBI nr
Match: XP_004150388.1 (ribosomal RNA processing protein 1 homolog [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 9.3e-71
Identity = 142/184 (77.17%), Postives = 153/184 (83.15%), Query Frame = 0


Query: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRR 120
           WH +KVPVQS++INRLASLLLHL+LS   QYFS            IDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FVHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKELRHFFPF 173
           F+HQFFA LKKHSWDLELC RLVQVLEERV+F  DKFHGNGV+YQIASVFL+ELR F P 
Sbjct: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180

[Close]

BLAST of Pay0019460 vs. NCBI nr
Match: KAE8651686.1 (hypothetical protein Csa_006341 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 9.3e-71
Identity = 142/184 (77.17%), Postives = 153/184 (83.15%), Query Frame = 0


Query: 1   MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRR 120
           WH +KVPVQS++INRLASLLLHL+LS   QYFS            IDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FVHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKELRHFFPF 173
           F+HQFFA LKKHSWDLELC RLVQVLEERV+F  DKFHGNGV+YQIASVFL+ELR F P 
Sbjct: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180

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BLAST of Pay0019460 vs. NCBI nr
Match: XP_023538012.1 (ribosomal RNA processing protein 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.2 bits (692), Expect = 6.7e-69
Identity = 137/182 (75.27%), Postives = 152/182 (83.52%), Query Frame = 0


Query: 3   EVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCVWH 62
           EVVEGDQ+FTSL+ LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCVWH
Sbjct: 2   EVVEGDQDFTSLIKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWH 61

Query: 63  TNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRRFV 122
            +K+PVQ+++INRLASLLLHL L   FQYFS            IDALRLDKFYLLIRRF+
Sbjct: 62  ADKLPVQTELINRLASLLLHLELPLAFQYFSIFLLTMRREWAGIDALRLDKFYLLIRRFM 121

Query: 123 HQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKELRHFFPFGR 173
           HQFFA LKK+SWDLELC R VQVLEERVFFT+DKFHGNGV+YQIASVFL+ELR F P G+
Sbjct: 122 HQFFALLKKNSWDLELCRRSVQVLEERVFFTDDKFHGNGVNYQIASVFLEELRPFLPLGK 181

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BLAST of Pay0019460 vs. TAIR 10
Match: AT5G20600.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). )

HSP 1 Score: 161.0 bits (406), Expect = 9.1e-40
Identity = 80/183 (43.72%), Postives = 117/183 (63.93%), Query Frame = 0


Query: 2   EEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCVW 61
           E+ +  +++  SL+  LA   ++ RD++LR +++ WLP Q  +   DMKKLW+G+FYCVW
Sbjct: 11  EQALPIEEDCKSLIKKLASCKQSIRDRSLRTVLRTWLPEQTEISDEDMKKLWQGIFYCVW 70

Query: 62  HTNKVPVQSKIINRLASLLLHLNLSFTFQYFS------------IDALRLDKFYLLIRRF 121
           H +K   QS++I+RL+S L  L L  +  YF+            ID LRLDKFYLLIRRF
Sbjct: 71  HADKSLYQSELIDRLSSALQSLPLPLSIHYFTVFLFTMRREWSRIDRLRLDKFYLLIRRF 130

Query: 122 VHQFFASLKKHSWDLELCCRLVQVLEERVFFTNDKFHGNGVSYQIASVFLKELRHFFPFG 173
           +H FF+ +  +SWDLE   RL+ +L +     +DKF GNGV+Y I S F++ELR F P  
Sbjct: 131 LHGFFSLIDSNSWDLEFTRRLMGILFDGTLLADDKFQGNGVNYHITSAFVEELRPFLPLR 190

The following BLAST results are available for this feature:

BLAST of Pay0019460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y7M6	2.7e-12	31.52	Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces pombe (strain ...	[more]
Q14684	1.3e-11	31.48	Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens OX=9606 GN=RRP1B PE...	[more]
Q91YK2	1.7e-11	29.27	Ribosomal RNA processing protein 1 homolog B OS=Mus musculus OX=10090 GN=Rrp1b P...	[more]
P56183	1.1e-10	29.17	Ribosomal RNA processing protein 1 homolog A OS=Mus musculus OX=10090 GN=Rrp1 PE...	[more]
P56182	2.5e-10	28.92	Ribosomal RNA processing protein 1 homolog A OS=Homo sapiens OX=9606 GN=RRP1 PE=...	[more]

BLAST of Pay0019460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRW1	9.3e-93	90.36	Ribosomal RNA processing protein 1-like protein B isoform X2 OS=Cucumis melo var...	[more]
E5GCP3	9.3e-93	90.36	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3C5Z1	9.3e-93	90.36	ribosomal RNA processing protein 1 homolog A-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5A7U008	3.5e-71	77.72	Ribosomal RNA processing protein 1-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BR64	3.5e-71	77.72	ribosomal RNA processing protein 1 homolog OS=Cucumis melo OX=3656 GN=LOC1034922...	[more]

BLAST of Pay0019460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457582.1	1.9e-92	90.36	PREDICTED: ribosomal RNA processing protein 1 homolog A-like [Cucumis melo] >ADN...	[more]
XP_008450828.1	7.1e-71	77.72	PREDICTED: ribosomal RNA processing protein 1 homolog [Cucumis melo] >KAA0047556...	[more]
XP_004150388.1	9.3e-71	77.17	ribosomal RNA processing protein 1 homolog [Cucumis sativus]	[more]
KAE8651686.1	9.3e-71	77.17	hypothetical protein Csa_006341 [Cucumis sativus]	[more]
XP_023538012.1	6.7e-69	75.27	ribosomal RNA processing protein 1 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Pay0019460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20600.1	9.1e-40	43.72	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010301	Nucleolar, Nop52	PFAM	PF05997	Nop52	coord: 14..166 e-value: 1.3E-34 score: 119.9
IPR010301	Nucleolar, Nop52	PANTHER	PTHR13026	NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52	coord: 15..168
None	No IPR available	PANTHER	PTHR13026:SF0	RIBOSOMAL RNA-PROCESSING 1	coord: 15..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0019460.1	Pay0019460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0030688	preribosome, small subunit precursor