Pay0019244 (gene) Melon (Payzawat) v1

Overview
NamePay0019244
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionZinc finger CCHC domain-containing protein 7 isoform X2
Locationchr09: 16935354 .. 16939222 (-)
RNA-Seq ExpressionPay0019244
SyntenyPay0019244
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTTCTTTTCAAGGTAATTGTTGTAACTAATGTAGTTTAGAAATGTTGTATTTGGAAATGATAGTTCTTCTCAATTGCTGTATAAGTGAAAGATTAGAACACTAGAAACTTATACACCAAGAACTGTTGTCTTCTCTGCAAAGGAATTGAGTTACAAAGTTCTAAGTATGATCCCACTCAAATATTTCTTCACATAGTTGGACAATCTAAAATGATAGTTGCTGTTCATTCCATATTCTTCTATATATTTATTAATTTTTTATTGTCTTCCTCCATAGATGCCAACATGAATCTTGAGCTTGGAAGTGGAATTCTGATTGTTGTTCCAATTTCAAACGAGCATTCAGCTTATGGAAGCTTAATTGAGAACGCAATATAAATTGCAATTAAAGAAGCACGGTAAGAAATCCACAAGTCAAATTTGAAAATTTTCTAAACATATAAGGAGTATAACGTTGCAAATATTTGAACCTTTAATCGCTAAGCAAAGTTCTTAATGCATTAATTGTTGAGCTATGCCGAAACTCATCCACCAGTATATACACATTTTAGGGAGAAGAATATTGTGGAAAAGTTTTGATTTAGATTTAATAATGTGTTGAAACTTTTTTGTGTTTACTTTAAAAATCTCCAAGCTTTCATTCCTAGATAAGGTAAATCCATTTTATTTGAAGTTATTATTGCTCGAGTTTGTTTCTGATTTAATAATGTGCTGAAACTTTGTTATTCATTTACTTATATTTCACGTCCAAGTGTCATTCTAAACTCATAGTTTTGGAGCTTTCTTAGGGTGGCAAGAGGGTTCTTGAGCAAACTTCTAGTGCTGCATCACCTAACTCATGCTATAGATGTGGTGAACAAGGGCATTTTGCTCGGGAGTGTGCAGGTTCCACCAAGGTAGATAAAATAGCTTACATATTTGCTTGTTTTATTAGGAAAAAAGAAAATTTTCATTTTGTTATGAATTTATATCTCTTTTTGAAATGTTTTTTTTCTCTTGCTGTGAGAGGGAAAAGAAACCATCTTGGATGCACTTGGTGCTATTTCAACTGCTTGCCACAAATTAATTTCTATTGTAGATCCTGCCATGCCCAATGCCATTGTAAATCTGGTATCTTCCTCCTGCTCCAAGAAAGCAAAGAAATTTCGAAGCAATAGATGCAAGGGGATAGACTTTAGTTTTGGTATACAACACATGTTTTTGGTTATATAACATAGCTATTATTGTTGATTTTGGAATAGGCCACACATAGGAAATTTTAGTTGGTTATATTTGGATTGAAATTCTGTAATTGTTGATGACATTGTTGAGAAAAATGAAATTATTGTTGGTTTACTGGTTTATTTGTCATTTTATTGTGTTAACTACTGGTTGGAAAGGAATGTACCTAATGCATGACACAGAAAATAGAAAATTTGTATATTTAATATATTAATAAACAATATACATAACGTTAAATATATGACGAATTTTTAGTGTCAACTATACAATTTTACTTGACGTGTAAATAGTGTCAAGTATGCGATCTTACTTGAATCAAATATAATATTTTACTTGACGGTTTTTTAGTATCAAATATATAATTTTACTTGACGTGTAAATAGTGTCAAGTATGCGATCTTGACGGTAGAATACTTGACGTCAATACAATGTCAAGTAAAGGTATACTTGACGATTTATTAGTGTCAAGTAATGGTATACTTGACGTGTTTTGAATGTCAAGTAAAGGTATACTTGACGGTTTTTCAGTGTCAAGTAATCCGACTATACTTGACAGTCGATTACTTGACGCTTTTAAAAACGTCAAGTAAAGGTTTACTTGACACTGTATTAACGTCAAGTAATCCAATTTCTGTAGTAGTGACATCACTAATCTCTCAGATTCATCTGTCAATGATATTGATTTTGCAAATGATCCTTATTACAATTTCGATATTTCCGATACTTTTGGGTTTTGAAACCATTTTAAATTCTACTATTAATTTTAATTAAACATAAAATCATTAAAATTATTATAAATTAAAAAAAATGTCATTATTAATCATTAAATATATACATTAACTTAGTTGACACAAAAGAAAATGTACGGTAACTAGCCGCTATTATATTAGGTTGTATTTTTGAAAACTTTTATTTAAATTTAAAACATTACAAAAATAAATAGTTTATTATTTGATTAAATAAAAATTTTATTTTTTTTTTAATTAATACAAAGCAGAAAGGATTATATGGTCTCTAAGAAAGTGGCATTTCTTATAATTAATTAAAAATAAGAGAGAATAAAATTGTAAAAGAAAAAAAAAAACAAATTCATTGTTTAATATAACAATTATTTTAATTACATTTTAAATTTTAGTTCCTTCAGTGTTCTAATGACTTCATTATAAAAAATATTATTTGTAAAGTCTGCATTTTTATTAATTTTCAATTTACTTCTTATTTTAGGAAAAAATAATTTAATTTTTTAATCTAGTATTTATAATGAGATAAATGATTAATATTAAGTTTACTTGACATATTATTTAAGATATGAATGATATAACCTTATCTTTTCCTTATGAGTATTGTAAAAATGTTAATCGAAGAAAACTCAAAAATTTTACAAATTTAAATAGTGCTTTTGATATTGGGGAATTTGGAATTTTCCTTGTGAAATACTGGAGACCATTGGTCAAATTTATACATCAATTATCCCTTAATTTTGAGAATTAAAATAATAGAATAAAATACATGAAATAATTGTGAAATGAAACCAAATAACCAATTAAGGGCTTCTAGAAGACTTTTGAAAATCGTTGGTGGCTTCATTACTTTCTTCCACCGTGGCGTGATTTACTCTAATAAATTATAATTATATGTAAATGTACAATAATACATTTTCTTTGTCAAAATTATATTTTTTAAATCATCCATGTATAGTATTTTTTTTATTTTAAAAGTTTTATTCTAAAATGTTCTATGCGACTACTAAAAAGAAAAAAAAAATGTTGGGTAAAATGTAATTTATCACAATGAATTGTTTATTATCAAAATTTACTTTTACAAAAATAAATATTCTTTAACTTTCAATCAAATACACGGATAAAGTTTGTTTTATTTTAATTCTTTGTAATCCAATCATATTATTTTGTTGATGAATAAATATTTTGAATTTGGTGAGACAATATGTTATACAACTATGCAATGAACAAATGTTAGCAATAAATCACTAAATTTTTGTTTATTAAACCAAATAAAAGGCATAATACATTAATAACAAAAGTGAAAAAAAAAAAACCTAGCATATATATATATATATATATATACATACATATATATATATTCTCAAATAGATTGGTTGCGACATTTGGTAGTGAAAACTTTTATTCAACTTTATCAAAGTTAAAATTGAGAAATTACATAAGACGTATGTGCATCTTTTACAACTTAAATGTACCATCATCCATCTTAGAGAAGCCTTAAATGTTGGATAATGAGAACAAACATTGAAACAAAAAAAAAATTAAGAAAGAATAATTAACCGTTAAATGTTGGTGAAGAATAATAATAAGAATAGTCCTTTTATAGTAGTTGATAGTTACAAAACTTTTTTAATTCTATAACTCCTAAAGTTTGAATTTTAATTAAATTAATCATATGAAATCTTTAAAATAATAGGATAATGAGGTGTATTGTTATGGATATTAATTTATTATTATTAATAATAATAATAATAATAAGATTTATGGGCTTGTTACCTGGACCGTAAATATTTCAGTAGTTTATTATATTTAGGAAAGTTTCCCTATATATAATTAGATTTTGGATGTTAGACAAACTCATTTAGTATTGTTTAGGTCATTGACGAAGGTGTTTCGTGTTAG

mRNA sequence

ATGACAGTTCTTTTCAAGGGTGGCAAGAGGGTTCTTGAGCAAACTTCTAGTGCTGCATCACCTAACTCATGCTATAGATGTGGTGAACAAGGGCATTTTGCTCGGGAGTGTGCAGGTTCCACCAAGGTCATTGACGAAGGTGTTTCGTGTTAG

Coding sequence (CDS)

ATGACAGTTCTTTTCAAGGGTGGCAAGAGGGTTCTTGAGCAAACTTCTAGTGCTGCATCACCTAACTCATGCTATAGATGTGGTGAACAAGGGCATTTTGCTCGGGAGTGTGCAGGTTCCACCAAGGTCATTGACGAAGGTGTTTCGTGTTAG

Protein sequence

MTVLFKGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTKVIDEGVSC
Homology
[Close]
BLAST of Pay0019244 vs. ExPASy TrEMBL
Match: A0A1S3BXL1 (zinc finger CCHC domain-containing protein 7 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494199 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 6   KGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTKVIDEG 48
           KGGKR+LE+TS AASP+SCYRCGEQGHFAR+CAGSTK+   G
Sbjct: 388 KGGKRILEETSGAASPSSCYRCGEQGHFARDCAGSTKLAQGG 429

[Close]
BLAST of Pay0019244 vs. ExPASy TrEMBL
Match: A0A5D3DYV3 (Zinc finger CCHC domain-containing protein 7 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001560 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-11
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 6   KGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTK 43
           KGGKR+LE+TS AASP+SCYRCGEQGHFARECAGSTK
Sbjct: 388 KGGKRILEETSGAASPSSCYRCGEQGHFARECAGSTK 424

[Close]
BLAST of Pay0019244 vs. ExPASy TrEMBL
Match: A0A0A0LSB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025270 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-11
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 6   KGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTK 43
           KGGKR+LE+TS AASP+SCYRCGEQGHFARECAGSTK
Sbjct: 389 KGGKRILEETSGAASPSSCYRCGEQGHFARECAGSTK 425

[Close]
BLAST of Pay0019244 vs. ExPASy TrEMBL
Match: A0A5A7UTU3 (Zinc finger CCHC domain-containing protein 7 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004740 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-11
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 6   KGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTK 43
           KGGKR+LE+TS AASP+SCYRCGEQGHFAR+CAGSTK
Sbjct: 388 KGGKRILEETSGAASPSSCYRCGEQGHFARDCAGSTK 424

[Close]
BLAST of Pay0019244 vs. ExPASy TrEMBL
Match: A0A1S3BX80 (zinc finger CCHC domain-containing protein 7 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494199 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-11
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 6   KGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTK 43
           KGGKR+LE+TS AASP+SCYRCGEQGHFAR+CAGSTK
Sbjct: 388 KGGKRILEETSGAASPSSCYRCGEQGHFARDCAGSTK 424

[Close]
BLAST of Pay0019244 vs. NCBI nr
Match: XP_008453512.1 (PREDICTED: zinc finger CCHC domain-containing protein 7 isoform X3 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-11
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 6   KGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTKVIDEG 48
           KGGKR+LE+TS AASP+SCYRCGEQGHFAR+CAGSTK+   G
Sbjct: 388 KGGKRILEETSGAASPSSCYRCGEQGHFARDCAGSTKLAQGG 429

[Close]
BLAST of Pay0019244 vs. NCBI nr
Match: XP_011649266.1 (zinc finger CCHC domain-containing protein 7 isoform X1 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 8.6e-11
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 6   KGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTK 43
           KGGKR+LE+TS AASP+SCYRCGEQGHFARECAGSTK
Sbjct: 389 KGGKRILEETSGAASPSSCYRCGEQGHFARECAGSTK 425

[Close]
BLAST of Pay0019244 vs. NCBI nr
Match: XP_011649268.1 (zinc finger CCHC domain-containing protein 7 isoform X2 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 8.6e-11
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 6   KGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTK 43
           KGGKR+LE+TS AASP+SCYRCGEQGHFARECAGSTK
Sbjct: 389 KGGKRILEETSGAASPSSCYRCGEQGHFARECAGSTK 425

[Close]
BLAST of Pay0019244 vs. NCBI nr
Match: TYK28515.1 (zinc finger CCHC domain-containing protein 7 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 8.6e-11
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 6   KGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTK 43
           KGGKR+LE+TS AASP+SCYRCGEQGHFARECAGSTK
Sbjct: 388 KGGKRILEETSGAASPSSCYRCGEQGHFARECAGSTK 424

[Close]
BLAST of Pay0019244 vs. NCBI nr
Match: KAE8652476.1 (hypothetical protein Csa_013055 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 8.6e-11
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 6   KGGKRVLEQTSSAASPNSCYRCGEQGHFARECAGSTK 43
           KGGKR+LE+TS AASP+SCYRCGEQGHFARECAGSTK
Sbjct: 389 KGGKRILEETSGAASPSSCYRCGEQGHFARECAGSTK 425

[Close]
BLAST of Pay0019244 vs. TAIR 10
Match: AT3G43590.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 41.6 bits (96), Expect = 2.2e-04
Identity = 15/31 (48.39%), Postives = 22/31 (70.97%), Query Frame = 0 

Query: 13  EQTSSAASPNSCYRCGEQGHFARECAGSTKV 44
           E+  ++   + CYRCGE+GHFAREC  S+ +
Sbjct: 316 ERLFNSREASECYRCGEEGHFARECPNSSSI 346

The following BLAST results are available for this feature:
BLAST of Pay0019244 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0019244 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BXL12.4e-1178.57zinc finger CCHC domain-containing protein 7 isoform X3 OS=Cucumis melo OX=3656 ... [more]
A0A5D3DYV34.2e-1189.19Zinc finger CCHC domain-containing protein 7 isoform X2 OS=Cucumis melo var. mak... [more]
A0A0A0LSB84.2e-1189.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025270 PE=4 SV=1[more]
A0A5A7UTU39.3e-1186.49Zinc finger CCHC domain-containing protein 7 isoform X2 OS=Cucumis melo var. mak... [more]
A0A1S3BX809.3e-1186.49zinc finger CCHC domain-containing protein 7 isoform X2 OS=Cucumis melo OX=3656 ... [more]
BLAST of Pay0019244 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453512.15.1e-1178.57PREDICTED: zinc finger CCHC domain-containing protein 7 isoform X3 [Cucumis melo... [more]
XP_011649266.18.6e-1189.19zinc finger CCHC domain-containing protein 7 isoform X1 [Cucumis sativus][more]
XP_011649268.18.6e-1189.19zinc finger CCHC domain-containing protein 7 isoform X2 [Cucumis sativus][more]
TYK28515.18.6e-1189.19zinc finger CCHC domain-containing protein 7 isoform X2 [Cucumis melo var. makuw... [more]
KAE8652476.18.6e-1189.19hypothetical protein Csa_013055 [Cucumis sativus][more]
BLAST of Pay0019244 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G43590.12.2e-0448.39zinc knuckle (CCHC-type) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 23..39
e-value: 0.0019
score: 27.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 23..37
e-value: 3.4E-7
score: 30.1
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 24..37
score: 10.938377
NoneNo IPR availableGENE3D4.10.60.10coord: 13..43
e-value: 3.8E-8
score: 34.8
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 7..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0019244.1Pay0019244.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding