Pay0019032 (gene) Melon (Payzawat) v1

Overview


Name	Pay0019032
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribosomal RNA small subunit methyltransferase NEP1-like
Location	chr10: 11194623 .. 11195990 (-)
RNA-Seq Expression	Pay0019032
Synteny	Pay0019032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCTCAGAAAAGGAGGAACTCTAAAAGTTTCTCTTCAAAGTTGGCAAGGCGGAAGCAGGAGAGTGTAGAAAATTTAGATGAACTGAAAAATGTAGAAGATGTTGGTACGACTTCCAGTTTGTTGGATATGATGAATGAGAAGCCTCAAGAGTCTCGGGTAATATTTGTTCTGGATAATGCTCCTTTGCACAAGGGTCTTGTTGGGAAGGTACATGCATTTCTAAATTAAATTGTTTTTTTCCTCTTATTACATGGAACTATATATATTTGCAAACACTCGAGGAAAAATAAGTGTTAACATAAAAATTCTTGTAGTTAGGAATTAAAATGTATCTATTTTAGTAACATGTGACTATATTTATCAATTGTTTTTTTTTTATTTTATCCTTTAGAAGTGGAAGATTCTTGATTCATGGAGAGATCATCAGTTCCTTCTCAAGCATAAGAAGAATCTTAAAGACTTTTGTCCTGAAAATGTTCGTCAGGTATGTTTGTTGATGAAGAGAAATTACACTTTCGTCTTAAATTAAAAATGTTCATGCAATGTTGCTTGTTATAATCTAAATTTTGTTGCTTTATGTTTAATAATTCACTGAGAAGCTTTCACAATCCATAATATACGTAACTACTTTATAATCTATAATATATTTAAAAATAACCTTTATTTTTTGACAACCATACAAAACATTTTATTATTGTAAAAAATTGGCAAAATAATGTTACAAAAGAACTAATACCAACTGTGTTAACTAGGATCTTTCTTTCACATTTTTCTCAACGAAAGTGGTTGTTTAAAAAAAAGAAAAAAAAAACTAGGATAATTCATACAAAATTTCTGGTAGAGAGCTTGACCAAAGGAACACCATGAGAAGAATCTAGACTACCCTTCAAAATGCTATTAAAGAACAGAAACCGTATACTAAGTTACATCCTTGAGAAAAACCGTATGTAGGTGATGCAAATGATAAACGATGACCAAACAAATCTAGCCAAAAGAGAAAAAAATTCCTAGTTGAAAGAACTGCAAAAGATTCTTTCAATGGATCATAAGTTTAGCTAAGTCGTAAGTTTCTAAGAAAGATGAAAATTTTAAAAATCTATGAAGCATGAATACTGTGTTAAAGCTTCAACCCAACCAATCTTCCAAAAGCAACAAAAATAAAAGAAAAGAAAAACGAATAAATTAAGAATTAAAAAACCTGAAGGATGAGCAAACCAGACGACCATCTTCTTTATTCTTCCTCTGTGATACACAAACAACCAGGTTGCCTTCAACCCTGTCCTCTACAATGCAAGGTCGGTGGATAAGGATTTTGTTGAAAAGGAGGCCAACAAGAGTTTAGATCATTCCACAGCTTCTTAA

mRNA sequence

ATGCCTCCTCAGAAAAGGAGGAACTCTAAAAGTTTCTCTTCAAAGTTGGCAAGGCGGAAGCAGGAGAGTGTAGAAAATTTAGATGAACTGAAAAATGTAGAAGATGTTGGTACGACTTCCAGTTTGTTGGATATGATGAATGAGAAGCCTCAAGAGTCTCGGGTAATATTTGTTCTGGATAATGCTCCTTTGCACAAGGGTCTTGTTGGGAAGAAGTGGAAGATTCTTGATTCATGGAGAGATCATCAGTTCCTTCTCAAGCATAAGAAGAATCTTAAAGACTTTTGTCCTGAAAATGTTCGTCAGGTTGCCTTCAACCCTGTCCTCTACAATGCAAGGTCGGTGGATAAGGATTTTGTTGAAAAGGAGGCCAACAAGAGTTTAGATCATTCCACAGCTTCTTAA

Coding sequence (CDS)

ATGCCTCCTCAGAAAAGGAGGAACTCTAAAAGTTTCTCTTCAAAGTTGGCAAGGCGGAAGCAGGAGAGTGTAGAAAATTTAGATGAACTGAAAAATGTAGAAGATGTTGGTACGACTTCCAGTTTGTTGGATATGATGAATGAGAAGCCTCAAGAGTCTCGGGTAATATTTGTTCTGGATAATGCTCCTTTGCACAAGGGTCTTGTTGGGAAGAAGTGGAAGATTCTTGATTCATGGAGAGATCATCAGTTCCTTCTCAAGCATAAGAAGAATCTTAAAGACTTTTGTCCTGAAAATGTTCGTCAGGTTGCCTTCAACCCTGTCCTCTACAATGCAAGGTCGGTGGATAAGGATTTTGTTGAAAAGGAGGCCAACAAGAGTTTAGATCATTCCACAGCTTCTTAA

Protein sequence

MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLDNAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQVAFNPVLYNARSVDKDFVEKEANKSLDHSTAS

Homology

[Close]

BLAST of Pay0019032 vs. ExPASy TrEMBL
Match: A0A5D3CRG9 (Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00180 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.5e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60
           MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD
Sbjct: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60

Query: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQVAFNPVLYNARSVDKDFV 120
           NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQVAFNPVLYNARSVDKDFV
Sbjct: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQVAFNPVLYNARSVDKDFV 120

Query: 121 EKEANKSLDHSTAS 135
           EKEANKSLDHSTAS
Sbjct: 121 EKEANKSLDHSTAS 134

[Close]

BLAST of Pay0019032 vs. ExPASy TrEMBL
Match: A0A5A7SNC0 (Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00430 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 9.4e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60
           MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD
Sbjct: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60

Query: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ 103
           NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ
Sbjct: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ 102

[Close]

BLAST of Pay0019032 vs. ExPASy TrEMBL
Match: A0A1S3C5G9 (ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo OX=3656 GN=LOC103496687 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 45  MMNEKPQESRVIFVLDNAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ 103
           MMNEKPQESRVIFVLDNAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ
Sbjct: 1   MMNEKPQESRVIFVLDNAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ 58

[Close]

BLAST of Pay0019032 vs. ExPASy TrEMBL
Match: A0A151R426 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_041463 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 5   KRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESR--VIFVLDNA 64
           KR+ ++  S  L   K+E  E   ++K  E      SL   +   P+  R   IF+LDNA
Sbjct: 11  KRKRAEEQSPNLTIGKEEGKEEEKDVKKDEIASNDVSLFAPLASSPKNVRSPAIFILDNA 70

Query: 65  PLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQV 104
            L KGLV K+WKIL+S  D QFLLK  KNL D+ P+ + +V
Sbjct: 71  SLIKGLVRKEWKILNSDEDAQFLLKQNKNLNDYRPDIIHEV 111

[Close]

BLAST of Pay0019032 vs. ExPASy TrEMBL
Match: A0A151R404 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_041456 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.9e-08
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 5   KRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESR--VIFVLDNA 64
           KR+ ++  S  L   K+E  E   ++K  E      SL   +   P+  R   IF+LDNA
Sbjct: 11  KRKRAEEQSPNLTIGKEEGKEEEKDVKKDEIASNDVSLFAPLASSPKNVRSPAIFILDNA 70

Query: 65  PLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ 103
            L KGLV K+WKIL+S  D QFLLK  KNL D+ P+ + +
Sbjct: 71  SLIKGLVRKEWKILNSDEDAQFLLKQNKNLNDYRPDIIHE 110

[Close]

BLAST of Pay0019032 vs. NCBI nr
Match: TYK14381.1 (ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 9.2e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60
           MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD
Sbjct: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60

Query: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQVAFNPVLYNARSVDKDFV 120
           NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQVAFNPVLYNARSVDKDFV
Sbjct: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQVAFNPVLYNARSVDKDFV 120

Query: 121 EKEANKSLDHSTAS 135
           EKEANKSLDHSTAS
Sbjct: 121 EKEANKSLDHSTAS 134

[Close]

BLAST of Pay0019032 vs. NCBI nr
Match: KAA0032138.1 (ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60
           MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD
Sbjct: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60

Query: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ 103
           NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ
Sbjct: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ 102

[Close]

BLAST of Pay0019032 vs. NCBI nr
Match: XP_038891816.1 (ribosomal RNA small subunit methyltransferase nep-1-like [Benincasa hispida])

HSP 1 Score: 177.9 bits (450), Expect = 5.6e-41
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60
           M  QKRRNS+S SSKLAR KQE VENLDELKNVEDV T SSLLD++NEKPQE RVIFVLD
Sbjct: 1   MSHQKRRNSESSSSKLARLKQERVENLDELKNVEDVNTNSSLLDVINEKPQEHRVIFVLD 60

Query: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ 103
           NAPLHKGLVGKKWKILDSWRD QFLLKHKKNLKDFCPENVRQ
Sbjct: 61  NAPLHKGLVGKKWKILDSWRDQQFLLKHKKNLKDFCPENVRQ 102

[Close]

BLAST of Pay0019032 vs. NCBI nr
Match: XP_008456875.1 (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 6.7e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 45  MMNEKPQESRVIFVLDNAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ 103
           MMNEKPQESRVIFVLDNAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ
Sbjct: 1   MMNEKPQESRVIFVLDNAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQ 58

[Close]

BLAST of Pay0019032 vs. NCBI nr
Match: KYP37344.1 (hypothetical protein KK1_041463 [Cajanus cajan])

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-08
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 5   KRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESR--VIFVLDNA 64
           KR+ ++  S  L   K+E  E   ++K  E      SL   +   P+  R   IF+LDNA
Sbjct: 11  KRKRAEEQSPNLTIGKEEGKEEEKDVKKDEIASNDVSLFAPLASSPKNVRSPAIFILDNA 70

Query: 65  PLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQV 104
            L KGLV K+WKIL+S  D QFLLK  KNL D+ P+ + +V
Sbjct: 71  SLIKGLVRKEWKILNSDEDAQFLLKQNKNLNDYRPDIIHEV 111

The following BLAST results are available for this feature:

BLAST of Pay0019032 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0019032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRG9	4.5e-68	100.00	Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. mak...	[more]
A0A5A7SNC0	9.4e-50	100.00	Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. mak...	[more]
A0A1S3C5G9	3.2e-26	100.00	ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo OX=3656 ...	[more]
A0A151R426	3.0e-08	41.58	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_041463 PE=3 SV=1	[more]
A0A151R404	8.9e-08	41.00	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_041456 PE=3 SV=1	[more]

BLAST of Pay0019032 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14381.1	9.2e-68	100.00	ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuw...	[more]
KAA0032138.1	1.9e-49	100.00	ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuw...	[more]
XP_038891816.1	5.6e-41	88.24	ribosomal RNA small subunit methyltransferase nep-1-like [Benincasa hispida]	[more]
XP_008456875.1	6.7e-26	100.00	PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo...	[more]
KYP37344.1	6.3e-08	41.58	hypothetical protein KK1_041463 [Cajanus cajan]	[more]

BLAST of Pay0019032 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0019032.1	Pay0019032.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0070037	rRNA (pseudouridine) methyltransferase activity