Pay0018785 (gene) Melon (Payzawat) v1

Overview
NamePay0018785
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionDNA polymerase
Locationchr06: 20950576 .. 20951745 (-)
RNA-Seq ExpressionPay0018785
SyntenyPay0018785
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGTGATAATGAGAGCATACCAACGAATGAAATCGAAGATGTGAATGTGGGGGAGGAGATCAAATTGAAAGAGGTACTCAATTGAGGTGGAGGCTCAACAGTGAACGAATGAAAACAAAAAAAAATGAAAAGGGACACTTGGAGAAAGCGTAACATGGGAACCCTAGAAAAAATTAATTTTTTCCCACTTTTACTATTTTCCTTCTACTTTTTGTAGCGTTTATTAGAAATGCTATGATTGGATGCTATTAAAAAGCACATTTCTTCTAGTGTTGTATGATATATCAAATTAGTTGTGCGATAAGCTCCACTGAAAATATGAGCATGATTTTTTAAATTGGGTTAAATAGCCTTATTGAGAGTTTTTATATCTGATCTGAAATCAGTCCCTTTTGATCCGCGCCACCATATCATGACTCTCAATCTAATTAGTAGAGATAGCTCCATATAATATATGTTGTTTTTAAATTTGGTAGGTCCCTTAAATAACATTACTTTCTAATTACCATGTGATTAAATCTGATTATATCTACAATACCATTTTCTACATTTTGACTACCATGGGATACCTTCTAGTTATTATTTTATACCAATTTCTAATTCATTTTATATTTGTTTTAGGTGGTTGAGAAAGAATGGACAGGAGAAAGTCTTCCCAAGAAGATAAGCCCTAAATATTACTAAAAAAGCCCTAAATCAATAGAAAAAAATTAGACTAAGCAATTGAAACCAAAATCATAAAAGAACACCAAGGAAGATCAACGTACATATATAGTAAACAAAGAATAGGTCACAATAAAAATCAAACAAGAACAAGAAATCGTAAACAATAAAGAAAGAAGAAGAAGTTCTTCCGGCCCATCCCCGATCCCAAATCCTGAGCTTCCTAGATTTTGTAATCCCAAATTCACACAAAAAATTCCAATTAGCTAACACTACGGCAGTCGAGCTTCAATCTCTTCAGCCATGGCGGATGAACAACTCTTAATTAACCTTTAATCGTCAGAGGAGCCGAGGAGCTAAGGCAACCGGCCGACTTACGGCTCTCGAACGTCTTAAAGCCATCCGCGGTAGTGGTCGTCGATCGGAAGCCGGTGGTTTCCATGTGAAGTTGGAAAATCCTATCTACACGATACGAATTAAGAAAAAGGAGACTGTCAAGTAG

mRNA sequence

ATGAGGAGTGATAATGAGAGCATACCAACGAATGAAATCGAAGATGTGAATGTGGGGGAGGAGATCAAATTGAAAGAGAGGAGCCGAGGAGCTAAGGCAACCGGCCGACTTACGGCTCTCGAACGTCTTAAAGCCATCCGCGGTAGTGGTCGTCGATCGGAAGCCGGTGGTTTCCATGTGAAGTTGGAAAATCCTATCTACACGATACGAATTAAGAAAAAGGAGACTGTCAAGTAG

Coding sequence (CDS)

ATGAGGAGTGATAATGAGAGCATACCAACGAATGAAATCGAAGATGTGAATGTGGGGGAGGAGATCAAATTGAAAGAGAGGAGCCGAGGAGCTAAGGCAACCGGCCGACTTACGGCTCTCGAACGTCTTAAAGCCATCCGCGGTAGTGGTCGTCGATCGGAAGCCGGTGGTTTCCATGTGAAGTTGGAAAATCCTATCTACACGATACGAATTAAGAAAAAGGAGACTGTCAAGTAG

Protein sequence

MRSDNESIPTNEIEDVNVGEEIKLKERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIYTIRIKKKETVK
Homology
[Close]
BLAST of Pay0018785 vs. ExPASy Swiss-Prot
Match: Q9FHA3 (DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=POLA PE=3 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 7.4e-04
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRS-EAGGFHVKLENPIY 68
          + RSRGA+A+ R   LERLKAIR  G RS   GG+ ++L+ PI+
Sbjct: 11 RRRSRGAEASSRKDTLERLKAIRQGGIRSASGGGYDIRLQKPIF 54

[Close]
BLAST of Pay0018785 vs. ExPASy TrEMBL
Match: A0A5A7TSE8 (DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00700 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIY 68
          + RSRG++A  RLTALERLKAIR  GRRSEAGGF VKLENPIY
Sbjct: 11 RRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIY 53

[Close]
BLAST of Pay0018785 vs. ExPASy TrEMBL
Match: A0A0A0LPU1 (DNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_2G278160 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIY 68
          + RSRG++A  RLTALERLKAIR  GRRSEAGGF VKLENPIY
Sbjct: 11 RRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIY 53

[Close]
BLAST of Pay0018785 vs. ExPASy TrEMBL
Match: A0A1S3C6X9 (DNA polymerase OS=Cucumis melo OX=3656 GN=LOC103497378 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIY 68
          + RSRG++A  RLTALERLKAIR  GRRSEAGGF VKLENPIY
Sbjct: 11 RRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIY 53

[Close]
BLAST of Pay0018785 vs. ExPASy TrEMBL
Match: A0A6J1L1Z1 (DNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111499673 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIY 68
          + RSRG++AT RL ALERLKAIR  GRRSEAGGF VKLENPIY
Sbjct: 11 RRRSRGSEATARLQALERLKAIRTGGRRSEAGGFQVKLENPIY 53

[Close]
BLAST of Pay0018785 vs. ExPASy TrEMBL
Match: A0A6J1G8C4 (DNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111451682 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIY 68
          + RSRG++AT RL ALERLKAIR  GRRSEAGGF VKLENPIY
Sbjct: 11 RRRSRGSEATARLQALERLKAIRTGGRRSEAGGFQVKLENPIY 53

[Close]
BLAST of Pay0018785 vs. NCBI nr
Match: XP_011649321.1 (DNA polymerase alpha catalytic subunit [Cucumis sativus] >KGN61976.1 hypothetical protein Csa_005967 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIY 68
          + RSRG++A  RLTALERLKAIR  GRRSEAGGF VKLENPIY
Sbjct: 11 RRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIY 53

[Close]
BLAST of Pay0018785 vs. NCBI nr
Match: XP_008457764.1 (PREDICTED: DNA polymerase alpha catalytic subunit [Cucumis melo] >KAA0045778.1 DNA polymerase alpha catalytic subunit [Cucumis melo var. makuwa] >TYJ99503.1 DNA polymerase alpha catalytic subunit [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIY 68
          + RSRG++A  RLTALERLKAIR  GRRSEAGGF VKLENPIY
Sbjct: 11 RRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIY 53

[Close]
BLAST of Pay0018785 vs. NCBI nr
Match: XP_023534068.1 (DNA polymerase alpha catalytic subunit [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIY 68
          + RSRG++AT RL ALERLKAIR  GRRSEAGGF VKLENPIY
Sbjct: 11 RRRSRGSEATARLQALERLKAIRTGGRRSEAGGFQVKLENPIY 53

[Close]
BLAST of Pay0018785 vs. NCBI nr
Match: XP_023007070.1 (DNA polymerase alpha catalytic subunit [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIY 68
          + RSRG++AT RL ALERLKAIR  GRRSEAGGF VKLENPIY
Sbjct: 11 RRRSRGSEATARLQALERLKAIRTGGRRSEAGGFQVKLENPIY 53

[Close]
BLAST of Pay0018785 vs. NCBI nr
Match: KAG7035182.1 (DNA polymerase alpha catalytic subunit [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRSEAGGFHVKLENPIY 68
          + RSRG++AT RL ALERLKAIR  GRRSEAGGF VKLENPIY
Sbjct: 11 RRRSRGSEATARLQALERLKAIRTGGRRSEAGGFQVKLENPIY 53

[Close]
BLAST of Pay0018785 vs. TAIR 10
Match: AT5G67100.1 (DNA-directed DNA polymerases )

HSP 1 Score: 44.3 bits (103), Expect = 5.3e-05
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0 

Query: 25 KERSRGAKATGRLTALERLKAIRGSGRRS-EAGGFHVKLENPIY 68
          + RSRGA+A+ R   LERLKAIR  G RS   GG+ ++L+ PI+
Sbjct: 11 RRRSRGAEASSRKDTLERLKAIRQGGIRSASGGGYDIRLQKPIF 54

The following BLAST results are available for this feature:
BLAST of Pay0018785 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FHA37.4e-0452.27DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=POLA P... [more]
BLAST of Pay0018785 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TSE81.0e-0879.07DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00700... [more]
A0A0A0LPU11.0e-0879.07DNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_2G278160 PE=3 SV=1[more]
A0A1S3C6X91.0e-0879.07DNA polymerase OS=Cucumis melo OX=3656 GN=LOC103497378 PE=3 SV=1[more]
A0A6J1L1Z12.3e-0879.07DNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111499673 PE=3 SV=1[more]
A0A6J1G8C42.3e-0879.07DNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111451682 PE=3 SV=1[more]
BLAST of Pay0018785 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011649321.12.1e-0879.07DNA polymerase alpha catalytic subunit [Cucumis sativus] >KGN61976.1 hypothetica... [more]
XP_008457764.12.1e-0879.07PREDICTED: DNA polymerase alpha catalytic subunit [Cucumis melo] >KAA0045778.1 D... [more]
XP_023534068.14.8e-0879.07DNA polymerase alpha catalytic subunit [Cucurbita pepo subsp. pepo][more]
XP_023007070.14.8e-0879.07DNA polymerase alpha catalytic subunit [Cucurbita maxima][more]
KAG7035182.14.8e-0879.07DNA polymerase alpha catalytic subunit [Cucurbita argyrosperma subsp. argyrosper... [more]
BLAST of Pay0018785 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G67100.15.3e-0552.27DNA-directed DNA polymerases [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0018785.1Pay0018785.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0006269 DNA replication, synthesis of RNA primer
biological_process GO:0006273 lagging strand elongation
biological_process GO:0006272 leading strand elongation
biological_process GO:1902975 mitotic DNA replication initiation
cellular_component GO:0005658 alpha DNA polymerase:primase complex
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003896 DNA primase activity
molecular_function GO:0003688 DNA replication origin binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0017076 purine nucleotide binding
molecular_function GO:0019103 pyrimidine nucleotide binding
molecular_function GO:0003697 single-stranded DNA binding