Pay0018335 (gene) Melon (Payzawat) v1

Overview


Name	Pay0018335
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty1-copia retrotransposon protein
Location	chr12: 15599392 .. 15600640 (+)
RNA-Seq Expression	Pay0018335
Synteny	Pay0018335

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAAGACTTCCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACCACAGATCTCCCGACATCTGACCCCCCAACTACCACGTCAACATCCTCTGATCCAGAATCATCTACGGGACCTCTTACAGCTGTTGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAGACCGTTCGAGGACACCTGTTAAACCATATGTCTGATCCGATGTTTGATCTCTTCGTAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTGGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAGTCGTGGAACAAATTCATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAATTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAGGCTCCAGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTCAGTTAATGCTAACTTAGTCGAATCATCCTTTGTGAACAGAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACCACTGGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAGTGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTGGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTGCTGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTTTAAGTAATGTTCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGCCGGGCTTAA

mRNA sequence

ATGTCGATCAAGACTTCCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACCACAGATCTCCCGACATCTGACCCCCCAACTACCACGTCAACATCCTCTGATCCAGAATCATCTACGGGACCTCTTACAGCTGTTGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAGACCGTTCGAGGACACCTGTTAAACCATATGTCTGATCCGATGTTTGATCTCTTCGTAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTGGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAGTCGTGGAACAAATTCATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACCACTGGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAGTGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTGGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTGCTGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGCCGGGCTTAA

Coding sequence (CDS)

ATGTCGATCAAGACTTCCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACCACAGATCTCCCGACATCTGACCCCCCAACTACCACGTCAACATCCTCTGATCCAGAATCATCTACGGGACCTCTTACAGCTGTTGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAGACCGTTCGAGGACACCTGTTAAACCATATGTCTGATCCGATGTTTGATCTCTTCGTAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTGGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAGTCGTGGAACAAATTCATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACCACTGGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAGTGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTGGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTGCTGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGCCGGGCTTAA

Protein sequence

MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGVIGKGKEPGVWESVESGRA

Homology

[Close]

BLAST of Pay0018335 vs. ExPASy TrEMBL
Match: A0A1S3BE75 (uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=4 SV=1)

HSP 1 Score: 650.6 bits (1677), Expect = 3.5e-183
Identity = 323/329 (98.18%), Postives = 326/329 (99.09%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVT+QVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 VFMGNSATAGVIGKGKEPGVWESVESGRA 330
           VFMGNSATAGVIGKGKEPGVWESVESGRA
Sbjct: 301 VFMGNSATAGVIGKGKEPGVWESVESGRA 329

[Close]

BLAST of Pay0018335 vs. ExPASy TrEMBL
Match: A0A5D3CNJ2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold356G00110 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 2.9e-177
Identity = 328/392 (83.67%), Postives = 329/392 (83.93%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPL+GTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLNGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 330
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0018335 vs. ExPASy TrEMBL
Match: A0A5D3DL36 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00280 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 2.9e-177
Identity = 328/392 (83.67%), Postives = 328/392 (83.67%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQM DDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 330
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0018335 vs. ExPASy TrEMBL
Match: A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)

HSP 1 Score: 624.0 bits (1608), Expect = 3.5e-175
Identity = 310/316 (98.10%), Postives = 313/316 (99.05%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVT+QVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 VFMGNSATAGVIGKGK 317
           VFMGNSATAGVIGKGK
Sbjct: 301 VFMGNSATAGVIGKGK 316

[Close]

BLAST of Pay0018335 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 1.7e-169
Identity = 315/379 (83.11%), Postives = 316/379 (83.38%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 317
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0018335 vs. NCBI nr
Match: XP_008445782.1 (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])

HSP 1 Score: 650.6 bits (1677), Expect = 7.3e-183
Identity = 323/329 (98.18%), Postives = 326/329 (99.09%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVT+QVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 VFMGNSATAGVIGKGKEPGVWESVESGRA 330
           VFMGNSATAGVIGKGKEPGVWESVESGRA
Sbjct: 301 VFMGNSATAGVIGKGKEPGVWESVESGRA 329

[Close]

BLAST of Pay0018335 vs. NCBI nr
Match: TYK11996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 630.9 bits (1626), Expect = 6.0e-177
Identity = 328/392 (83.67%), Postives = 329/392 (83.93%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPL+GTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLNGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 330
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0018335 vs. NCBI nr
Match: TYK24060.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 630.9 bits (1626), Expect = 6.0e-177
Identity = 328/392 (83.67%), Postives = 328/392 (83.67%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQM DDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 330
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0018335 vs. NCBI nr
Match: TYK11299.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 624.0 bits (1608), Expect = 7.3e-175
Identity = 310/316 (98.10%), Postives = 313/316 (99.05%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLD TNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVT+QVK DQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240
           LQANV+DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS
Sbjct: 181 LQANVIDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS 240

Query: 241 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300
           QKPTPQANLAEQDS+IIA IVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC
Sbjct: 241 QKPTPQANLAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGEC 300

Query: 301 VFMGNSATAGVIGKGK 317
           VFMGNSATAGVIGKGK
Sbjct: 301 VFMGNSATAGVIGKGK 316

[Close]

BLAST of Pay0018335 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 605.1 bits (1559), Expect = 3.5e-169
Identity = 315/379 (83.11%), Postives = 316/379 (83.38%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVL------------------------------------------------------ 240
           LQANVL                                                      
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 ---------DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
                    DRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 317
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

[Close]

BLAST of Pay0018335 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 6.2e-15
Identity = 44/173 (25.43%), Postives = 93/173 (53.76%), Query Frame = 0


Query: 15  KLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVA 74
           K+   DG +Y  W+ ++ +F +QL++ YVL      S+P  +  +S  PE++   +T   
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVL------SEPCPSIGSSQGPETNPREITRAD 253

Query: 75  VTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ-KSAKDIWSTLESRYGGD 134
            T           +K+ +D+     HL+N +SD ++  +  + K AK++W  L+  Y  D
Sbjct: 254 ATG----------KKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCD 313

Query: 135 DAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL 187
           ++  K+  V K+++F+M +++P++EQ+  +  +  +++S GM + E    + +
Sbjct: 314 ESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTI 350

The following BLAST results are available for this feature:

BLAST of Pay0018335 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0018335 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BE75	3.5e-183	98.18	uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=...	[more]
A0A5D3CNJ2	2.9e-177	83.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DL36	2.9e-177	83.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CM58	3.5e-175	98.10	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BZI1	1.7e-169	83.11	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Pay0018335 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445782.1	7.3e-183	98.18	PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]	[more]
TYK11996.1	6.0e-177	83.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK24060.1	6.0e-177	83.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK11299.1	7.3e-175	98.10	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	3.5e-169	83.11	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0018335 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	6.2e-15	25.43	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 218..234 e-value: 0.0059 score: 25.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 219..234 score: 9.504374
None	No IPR available	GENE3D	4.10.60.10		coord: 174..251 e-value: 2.7E-5 score: 26.2
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 92..183 e-value: 7.5E-10 score: 38.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..209
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 17..316
None	No IPR available	PANTHER	PTHR47592:SF5	OS08G0421300 PROTEIN	coord: 17..316
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 202..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0018335.1	Pay0018335.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding