Pay0018287 (gene) Melon (Payzawat) v1

Overview


Name	Pay0018287
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol polyprotein
Location	chr11: 23453987 .. 23454463 (+)
RNA-Seq Expression	Pay0018287
Synteny	Pay0018287

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGTTGCCTTTTGCATTATATAATATTAGGGGCAACTCCTCTTTCACTACTGTATGGTTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACGAGCAACTGAATTTCATAGAAGAAAGGAGACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAGCACGAGCGTATAACAAAAAAGTTCGACATCACCATTTCCAAGAAGGAGATCTAGTGTTAAAAAGGATCCTGCCTTTTCAAAAGGATCACAAAGGAAAATGGACTCCTAACTACGAGGGACCATATATAGTAAAAAATGCTTTCTCAGGAGGAGCTTTAATTTTGACAAATATGGACGGAGATGACTTGCCTAACCCAATAAGTGCAAACTATGTGAAGAAATACTATGCATGGAGCGACGATTAA

mRNA sequence

ATGAAATGTTGCCTTTTGCATTATATAATATTAGGGGCAACTCCTCTTTCACTACTGTATGGTTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACGAGCAACTGAATTTCATAGAAGAAAGGAGACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAGCACGAGCGTATAACAAAAAAGTTCGACATCACCATTTCCAAGAAGGAGATCTAGTGTTAAAAAGGATCCTGCCTTTTCAAAAGGATCACAAAGGAAAATGGACTCCTAACTACGAGGGACCATATATAGTAAAAAATGCTTTCTCAGGAGGAGCTTTAATTTTGACAAATATGGACGGAGATGACTTGCCTAACCCAATAAGTGCAAACTATGTGAAGAAATACTATGCATGGAGCGACGATTAA

Coding sequence (CDS)

ATGAAATGTTGCCTTTTGCATTATATAATATTAGGGGCAACTCCTCTTTCACTACTGTATGGTTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACGAGCAACTGAATTTCATAGAAGAAAGGAGACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAGCACGAGCGTATAACAAAAAAGTTCGACATCACCATTTCCAAGAAGGAGATCTAGTGTTAAAAAGGATCCTGCCTTTTCAAAAGGATCACAAAGGAAAATGGACTCCTAACTACGAGGGACCATATATAGTAAAAAATGCTTTCTCAGGAGGAGCTTTAATTTTGACAAATATGGACGGAGATGACTTGCCTAACCCAATAAGTGCAAACTATGTGAAGAAATACTATGCATGGAGCGACGATTAA

Protein sequence

MKCCLLHYIILGATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALILTNMDGDDLPNPISANYVKKYYAWSDD

Homology

[Close]

BLAST of Pay0018287 vs. ExPASy TrEMBL
Match: A0A5A7UM09 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003650 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 11  LGATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG 70
           L ATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG
Sbjct: 157 LWATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG 216

Query: 71  QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL 130
           QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL
Sbjct: 217 QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL 276

Query: 131 ILTNMDGDDLPNPISANYVKKYYAWSDD 159
           ILTNMDGDDLPNPISANYVKKYYAWSDD
Sbjct: 277 ILTNMDGDDLPNPISANYVKKYYAWSDD 304

[Close]

BLAST of Pay0018287 vs. ExPASy TrEMBL
Match: A0A5D3D9Y9 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00020 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 9   IILGATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALC 68
           +I GATPLSL+YGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRY+QLNFIEERRLTALC
Sbjct: 243 VISGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERRLTALC 302

Query: 69  KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG 128
           KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG
Sbjct: 303 KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG 362

Query: 129 ALILTNMDGDDLPNPISANYVKKYYAWSDD 159
           ALILTNMDGDDLPNPISANYVKKYYAWSDD
Sbjct: 363 ALILTNMDGDDLPNPISANYVKKYYAWSDD 392

[Close]

BLAST of Pay0018287 vs. ExPASy TrEMBL
Match: A0A5A7VAF2 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00050 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.3e-70
Identity = 131/142 (92.25%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 12  GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
           G+TP SL+YGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRYEQLNFIEERRLTALC+GQ
Sbjct: 261 GSTPFSLVYGFEAVLPVEVEVPSLRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQ 320

Query: 72  LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
           LYQKKIARAYNKKVRH HFQEG+LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALI
Sbjct: 321 LYQKKIARAYNKKVRHRHFQEGNLVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALI 380

Query: 132 LTNMDGDDLPNPISANYVKKYY 154
           LTNMDGDDLPNPISA+YVKKYY
Sbjct: 381 LTNMDGDDLPNPISADYVKKYY 402

[Close]

BLAST of Pay0018287 vs. ExPASy TrEMBL
Match: A0A5A7SVL0 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00080 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 131/143 (91.61%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 12  GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
           G+TP SL+YGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRYEQLNFIEERRLTALC+GQ
Sbjct: 67  GSTPFSLVYGFEAVLPVEVEVPSLRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQ 126

Query: 72  LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
           LYQKKIARAYNKKVRH  FQEG+LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALI
Sbjct: 127 LYQKKIARAYNKKVRHRQFQEGNLVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALI 186

Query: 132 LTNMDGDDLPNPISANYVKKYYA 155
           LTNMDGDDLPNPISA+YVKKYYA
Sbjct: 187 LTNMDGDDLPNPISADYVKKYYA 209

[Close]

BLAST of Pay0018287 vs. ExPASy TrEMBL
Match: A0A151RXD7 (Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_031171 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.6e-53
Identity = 101/143 (70.63%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 12  GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
           GATP SL+YG EAVLP+EVE+ SLRV+ E +L+EA+W Q+RY+QLN IEE+RL ALC GQ
Sbjct: 137 GATPYSLVYGMEAVLPIEVEIPSLRVLAEAKLEEAEWVQIRYDQLNLIEEKRLNALCHGQ 196

Query: 72  LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
           LYQK++ RAY+KKVR   FQEGDLVLK+ILP QKDH+GKWTPNYEGPY+VK  F GGALI
Sbjct: 197 LYQKRVKRAYDKKVRPREFQEGDLVLKKILPNQKDHRGKWTPNYEGPYVVKKEFLGGALI 256

Query: 132 LTNMDGDDLPNPISANYVKKYYA 155
           LTNMDG+DL  P++ + VKKY+A
Sbjct: 257 LTNMDGEDLSLPVNFDAVKKYFA 279

[Close]

BLAST of Pay0018287 vs. NCBI nr
Match: TYK20386.1 (Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 2.3e-78
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 9   IILGATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALC 68
           +I GATPLSL+YGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRY+QLNFIEERRLTALC
Sbjct: 243 VISGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERRLTALC 302

Query: 69  KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG 128
           KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG
Sbjct: 303 KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG 362

Query: 129 ALILTNMDGDDLPNPISANYVKKYYAWSDD 159
           ALILTNMDGDDLPNPISANYVKKYYAWSDD
Sbjct: 363 ALILTNMDGDDLPNPISANYVKKYYAWSDD 392

[Close]

BLAST of Pay0018287 vs. NCBI nr
Match: KAA0054571.1 (Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 2.3e-78
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 11  LGATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG 70
           L ATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG
Sbjct: 157 LWATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG 216

Query: 71  QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL 130
           QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL
Sbjct: 217 QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL 276

Query: 131 ILTNMDGDDLPNPISANYVKKYYAWSDD 159
           ILTNMDGDDLPNPISANYVKKYYAWSDD
Sbjct: 277 ILTNMDGDDLPNPISANYVKKYYAWSDD 304

[Close]

BLAST of Pay0018287 vs. NCBI nr
Match: KAA0065292.1 (RNA-directed DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 8.9e-70
Identity = 131/142 (92.25%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 12  GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
           G+TP SL+YGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRYEQLNFIEERRLTALC+GQ
Sbjct: 261 GSTPFSLVYGFEAVLPVEVEVPSLRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQ 320

Query: 72  LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
           LYQKKIARAYNKKVRH HFQEG+LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALI
Sbjct: 321 LYQKKIARAYNKKVRHRHFQEGNLVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALI 380

Query: 132 LTNMDGDDLPNPISANYVKKYY 154
           LTNMDGDDLPNPISA+YVKKYY
Sbjct: 381 LTNMDGDDLPNPISADYVKKYY 402

[Close]

BLAST of Pay0018287 vs. NCBI nr
Match: KAA0033219.1 (Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 272.3 bits (695), Expect = 2.6e-69
Identity = 131/143 (91.61%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 12  GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
           G+TP SL+YGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRYEQLNFIEERRLTALC+GQ
Sbjct: 67  GSTPFSLVYGFEAVLPVEVEVPSLRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQ 126

Query: 72  LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
           LYQKKIARAYNKKVRH  FQEG+LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALI
Sbjct: 127 LYQKKIARAYNKKVRHRQFQEGNLVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALI 186

Query: 132 LTNMDGDDLPNPISANYVKKYYA 155
           LTNMDGDDLPNPISA+YVKKYYA
Sbjct: 187 LTNMDGDDLPNPISADYVKKYYA 209

[Close]

BLAST of Pay0018287 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 1.8e-54
Identity = 103/143 (72.03%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 12   GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
            GATP SL+YG EAVLP+EVE+ SLRV+ E +LDEA+W + RYEQLNFIEE+RLTAL  GQ
Sbjct: 2493 GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSHGQ 2552

Query: 72   LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
            LYQK++ RAYNKKV    F+EGDLVLKRILPF KDH+GKWTPNYEGP++VK AFSGGAL+
Sbjct: 2553 LYQKRLMRAYNKKVHPRSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALL 2612

Query: 132  LTNMDGDDLPNPISANYVKKYYA 155
            LTNMDG +L NP++++YV++YYA
Sbjct: 2613 LTNMDGVELKNPVNSDYVRRYYA 2635

The following BLAST results are available for this feature:

BLAST of Pay0018287 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0018287 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UM09	1.1e-78	99.32	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00365...	[more]
A0A5D3D9Y9	1.1e-78	97.33	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G0002...	[more]
A0A5A7VAF2	4.3e-70	92.25	RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7SVL0	1.3e-69	91.61	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G0008...	[more]
A0A151RXD7	1.6e-53	70.63	Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_031171 PE=4 SV=1	[more]

BLAST of Pay0018287 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20386.1	2.3e-78	97.33	Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0054571.1	2.3e-78	99.32	Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0065292.1	8.9e-70	92.25	RNA-directed DNA polymerase [Cucumis melo var. makuwa]	[more]
KAA0033219.1	2.6e-69	91.61	Pol polyprotein [Cucumis melo var. makuwa]	[more]
XP_031738551.1	1.8e-54	72.03	LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]	[more]

BLAST of Pay0018287 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 14..111
None	No IPR available	PANTHER	PTHR24559:SF342	SUBFAMILY NOT NAMED	coord: 14..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0018287.1	Pay0018287.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity