Pay0018256 (gene) Melon (Payzawat) v1

Overview


Name	Pay0018256
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr10: 13003498 .. 13005895 (-)
RNA-Seq Expression	Pay0018256
Synteny	Pay0018256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGAATATCCCAACATTTTTCCTGATGAGCTTCCAGAACTTCCACCTTCTAGGGAGATCGATTTTGCTATCGAGCTGGAGTCAGGCACTGCCTCAATATCAAGAGCTCCTTATAGAATAGCCCTAGCTGAGTTGAAGGAGTTAAAGGTCCACTTGCAGGAGTTACTGGACAAGGGTTTCATACGACCTAATGTGTCACCTTGAGGAGCACTAGTACTGTTCGTGAAGAAGAAGGATGGATCGATTCATCTTTACATTGATTACAGATAGCTGAATAAGGTGACAGTCAAGAACCGCTATCCTTTGCCCAGAATTGATGACTTGTTTGATCAGCTGTAAGGAGCCACTGTTTTCTCTAAGATTGATTTACGTTCAGGCTATCACCAACTGAGGATTAGAGACAATGATATTCCTAAGACTGCTTTTCATTCTAGATATGGACATTACGAGTTCATTGTAAAATCTTTTGGCTTGACCAATGCAACTGCTGTGTTTATGGATCTGATGAACAAGGTGTTCAAGGATTTCTTACACATTTTTGTCATAGTTTTCATCGGCGATATCTTGGTTTACTCCAAGACAGAGGCGAGCATAAGGAGCACTTGCATAAGGTTTTGGAGACTCTTCGAGCCAATAAGCTATATGCTAACTTTTCTAAACGCGAGTTCTAGGTGAAGAAGGTGTCTTTTCTTGGCCACGTAGTATTCAGTAAGGGAGTCTCTGTAGACCCAACGAAAATTAAAGTTGTCACTAGTTGGCCTCGACCATTTAAAGTCAGCGAAGTTCGTAGTTTTCTAGGTTTAGCAGGTTATTACAGAAGGTTCGTGGAAGATTTCTCTCGTATAGCCAGTTCGTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTATTTGTAGCCCAGCATGTAAGAGTAGTTTCTAGAAGCTTAAGAAGAAGCTTGTCACTACGCTAGTCTTTACAATGCCATATGGGTCTGGAAGTTTTGTGATTTACAGTGACGTCTCCAAGAAAGGACTGGATTGTGTTTTAATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCTCGTCGGTTGAAGAGTCATGAGTAGAACTACCCTACCCATGATCTAGAGTTGGTAGCAGTGGTTTTTGCACTTAAGATATGGAGACACTACTTGTATGGTGAGAAGATACAGATTTTTACTGACCAGAAGAGCCTGAAATACTTCTTCACCCAGAAGAAGTTGAACATGAGACAGAGAAGATGGCTTGAGTTAGTAAAGGATTATGACTGCGAGAGTCTGTATCACCCGAGTAAGGCGAACATGGTAGCTGATGCGCTTAGTAGGAAGGTGTCACATTCAGCAACGCTTATCACCAAGCAAGCTTCTTTGCTTTGAGACTTTAAGAGAGCTGAGATTGCAGTTTCGATAGTAGAAGTTACTTCACATTTGGCTCAGTTGTCAGTACAACCGACCTTGAGGCAGAGGATTATTGTTGCTCAGCTAAATGATCCATATTTGATTGATAATCATCGGCTTGTAGAAGCAGGGTAGGATGAGGAGTTTTCCATATCCTCTGATGGTGGACTTGTGTATGAGAGCCGTTTATGCATCTCAGCGGATGATGCAGTTAAGACAGAGCTTTTGACTGAGGCCCATAGCTTCCCATTCTCTATGCATCCTAGCAGTACGAAGATTTACCAGGACTTGAAGCGAGTGTACTGGTGGTGAAATATGAAGAGAGAAGTGGCAGACTTCGTTAGTAGCTGCTTGGTATGTCAACAGGTGAAGGCACCAAGACAAAGGCCAGTAGGTTTGTTGCAACCCTTGAGTGTGCCAGGGTGAAAGTGGGAGAGCGTGTCGATGGACTTCATTACAGGACTGCCTAGGACTTTGAAGGGCTATATGGTGATTTGGGTTGTTATTGACAGGCTCACGAAGTCAGCTCACTTTATTCCAGGGAAATCCACTTACACCGCTAGTAAGTAAGGACAGTTATATATGACCGAGATAGTGAGACTGCATGGAGTTCCTATACCTATCGTTTCACAGCAAAATTTTGGAAAGGACTTCAGCTTGCATTGGACACGAGGTTAGATTTCAGTACAGCCTTTCATCCTCAAACTAATGGTCAAACAGAAAGGTTGAATTAGATTTTGGAAGATATGTTGCGAGCTTGTGTGATAGAGTTTTTAGGAAGTTGGGACTCTCATTTGCATTTGATGGAGTTCGTTTATAATAATAGTTATCAGGCTAAGATTGGCATGGCACCGTTTGAGGCTCTGTATGGTAGGTGTTATAGATCTCCTGTATGTTGGGGTGAAGTTGGTGAGCAGAGAATGTTAGGCCCTAAGTTAGTTCAGACTACCAATGCAGCCATACAGAATATCAGAGCTCGTATGTTGACAGCATAG

mRNA sequence

ATGGTGAGAGAATATCCCAACATTTTTCCTGATGAGCTTCCAGAACTTCCACCTTCTAGGGAGATCGATTTTGCTATCGAGCTGGAGTCAGGCACTGCCTCAATATCAAGAGCTCCTTATAGAATAGCCCTAGCTGAGTTGAAGGAGTTAAAGGTCCACTTGCAGGAGTTACTGGACAAGGGCTATCACCAACTGAGGATTAGAGACAATGATATTCCTAAGACTGCTTTTCATTCTAGATATGGACATTACGAGTTCATTGTAAAATCTTTTGGCTTGACCAATGCAACTGCTGTGTTTATGGATCTGATGAACAAGGTGAAGAAGGTGTCTTTTCTTGGCCACGTAGTATTCAGTAAGGGAGTCTCTGTAGACCCAACGAAAATTAAAGTTGTCACTAGTTGGCCTCGACCATTTAAAGTCAGCGAAGTTCGTAGTTTTCTAGGTTTAGCAGGTTATTACAGAAGGAAGGGGACTCCTTTTATTTGTAGCCCAGCATGTAAGAGTATCTTTACAATGCCATATGGGTCTGGAAGTTTTGTGATTTACAGTGACGTCTCCAAGAAAGGACTGGATTGTGTTTTAATGCAGCAAGTTTCGATAGTAGAAGTTACTTCACATTTGGCTCAGTTGTCAGTACAACCGACCTTGAGGCAGAGGATTATTGTTGCTCAGCTAAATGATCCATATTTGATTGATAATCATCGGCTTGTAGAAGCAGGTTATCAGGCTAAGATTGGCATGGCACCGTTTGAGGCTCTGTATGGTAGGTGTTATAGATCTCCTGTATGTTGGGGTGAAGTTGGTGAGCAGAGAATGTTAGGCCCTAAGTTAGTTCAGACTACCAATGCAGCCATACAGAATATCAGAGCTCGTATGTTGACAGCATAG

Coding sequence (CDS)

ATGGTGAGAGAATATCCCAACATTTTTCCTGATGAGCTTCCAGAACTTCCACCTTCTAGGGAGATCGATTTTGCTATCGAGCTGGAGTCAGGCACTGCCTCAATATCAAGAGCTCCTTATAGAATAGCCCTAGCTGAGTTGAAGGAGTTAAAGGTCCACTTGCAGGAGTTACTGGACAAGGGCTATCACCAACTGAGGATTAGAGACAATGATATTCCTAAGACTGCTTTTCATTCTAGATATGGACATTACGAGTTCATTGTAAAATCTTTTGGCTTGACCAATGCAACTGCTGTGTTTATGGATCTGATGAACAAGGTGAAGAAGGTGTCTTTTCTTGGCCACGTAGTATTCAGTAAGGGAGTCTCTGTAGACCCAACGAAAATTAAAGTTGTCACTAGTTGGCCTCGACCATTTAAAGTCAGCGAAGTTCGTAGTTTTCTAGGTTTAGCAGGTTATTACAGAAGGAAGGGGACTCCTTTTATTTGTAGCCCAGCATGTAAGAGTATCTTTACAATGCCATATGGGTCTGGAAGTTTTGTGATTTACAGTGACGTCTCCAAGAAAGGACTGGATTGTGTTTTAATGCAGCAAGTTTCGATAGTAGAAGTTACTTCACATTTGGCTCAGTTGTCAGTACAACCGACCTTGAGGCAGAGGATTATTGTTGCTCAGCTAAATGATCCATATTTGATTGATAATCATCGGCTTGTAGAAGCAGGTTATCAGGCTAAGATTGGCATGGCACCGTTTGAGGCTCTGTATGGTAGGTGTTATAGATCTCCTGTATGTTGGGGTGAAGTTGGTGAGCAGAGAATGTTAGGCCCTAAGTTAGTTCAGACTACCAATGCAGCCATACAGAATATCAGAGCTCGTATGTTGACAGCATAG

Protein sequence

MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDKGYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKKVSFLGHVVFSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRKGTPFICSPACKSIFTMPYGSGSFVIYSDVSKKGLDCVLMQQVSIVEVTSHLAQLSVQPTLRQRIIVAQLNDPYLIDNHRLVEAGYQAKIGMAPFEALYGRCYRSPVCWGEVGEQRMLGPKLVQTTNAAIQNIRARMLTA

Homology

[Close]

BLAST of Pay0018256 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-15
Identity = 47/152 (30.92%), Postives = 67/152 (44.08%), Query Frame = 0


Query: 58  LDKGYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKV---------- 117
           L KG+HQ+ + +  I KTAF ++ GHYE++   FGL NA A F   MN +          
Sbjct: 302 LAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCL 361

Query: 118 -------------------------------------------KKVSFLGHVVFSKGVSV 157
                                                      K+ +FLGH+V   G+  
Sbjct: 362 VYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKP 421

[Close]

BLAST of Pay0018256 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-13
Identity = 43/152 (28.29%), Postives = 66/152 (43.42%), Query Frame = 0


Query: 58  LDKGYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKV---------- 117
           L KG+HQ+ +    + KTAF +++GHYE++   FGL NA A F   MN +          
Sbjct: 303 LAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCL 362

Query: 118 -------------------------------------------KKVSFLGHVVFSKGVSV 157
                                                      ++ +FLGHV+   G+  
Sbjct: 363 VYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKP 422

[Close]

BLAST of Pay0018256 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-13
Identity = 45/166 (27.11%), Postives = 71/166 (42.77%), Query Frame = 0


Query: 44  LAELKELKVHLQELLDKGYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDL 103
           LA L   K      L  G+HQ+ ++++DIPKTAF +  G YEF+   FGL NA A+F  +
Sbjct: 205 LASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRM 264

Query: 104 MNKV-----------------------------------------------------KKV 157
           ++ +                                                      +V
Sbjct: 265 IDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQV 324

[Close]

BLAST of Pay0018256 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-10
Identity = 47/165 (28.48%), Postives = 65/165 (39.39%), Query Frame = 0


Query: 44  LAELKELKVHLQELLDKGYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDL 103
           LA L + K      L  GYHQ+ + ++D  KT+F    G YEF    FGL NA+++F   
Sbjct: 264 LANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRA 323

Query: 104 MNKV-----------------------------------------------------KKV 156
           ++ V                                                     + V
Sbjct: 324 LDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESV 383

[Close]

BLAST of Pay0018256 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-07
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 109 KVSFLG--HVVFSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRR 157
           ++++LG  H++  +GVS DP K++ +  WP P   +E+R FLGL GYYRR
Sbjct: 29  QIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRR 78

[Close]

BLAST of Pay0018256 vs. ExPASy TrEMBL
Match: A0A1S4E1D1 (uncharacterized protein LOC107991507 OS=Cucumis melo OX=3656 GN=LOC107991507 PE=4 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 4.3e-156
Identity = 286/309 (92.56%), Postives = 287/309 (92.88%), Query Frame = 0


Query: 1   MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDK 60
           MVREYPNIFPDELPELP SREIDFAIELE GTASISRA YRI LAELKELKV LQELLDK
Sbjct: 1   MVREYPNIFPDELPELPTSREIDFAIELEPGTASISRASYRIDLAELKELKVQLQELLDK 60

Query: 61  GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKKVSFLGHVVFSK 120
           GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKKVSFLGHVVFSK
Sbjct: 61  GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKKVSFLGHVVFSK 120

Query: 121 GVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRKGTPFICSPACKS----------- 180
           GVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRKGTPFI SPACKS           
Sbjct: 121 GVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRKGTPFIWSPACKSSFQKLKKKLVT 180

Query: 181 --IFTMPYGSGSFVIYSDVSKKGLDCVLMQQVSIVEVTSHLAQLSVQPTLRQRIIVAQLN 240
             +FTMPYGSGSFVIYSDVSKKGLDCVLMQQVSIVEVTS LAQLSVQPTLRQRIIVAQLN
Sbjct: 181 TLVFTMPYGSGSFVIYSDVSKKGLDCVLMQQVSIVEVTSQLAQLSVQPTLRQRIIVAQLN 240

Query: 241 DPYLIDNHRLVEAGYQAKIGMAPFEALYGRCYRSPVCWGEVGEQRMLGPKLVQTTNAAIQ 297
           DPYLID HRLVE GYQAKIGMAPFEALYGRCYRSPVCWGEVGEQRMLGPKLVQTTNAAIQ
Sbjct: 241 DPYLIDKHRLVEVGYQAKIGMAPFEALYGRCYRSPVCWGEVGEQRMLGPKLVQTTNAAIQ 300

[Close]

BLAST of Pay0018256 vs. ExPASy TrEMBL
Match: A0A5D3DFV7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00300 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 2.0e-105
Identity = 250/474 (52.74%), Postives = 264/474 (55.70%), Query Frame = 0


Query: 1   MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDK 60
           MVREYPNIFPDELPELP SREIDFAIELE GTASISRA YRI LAELKELKV LQELLDK
Sbjct: 300 MVREYPNIFPDELPELPTSREIDFAIELEPGTASISRASYRIDLAELKELKVQLQELLDK 359

Query: 61  GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKK-------VSFL 120
           GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKV K       + F+
Sbjct: 360 GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVFKDFLHIFVIVFI 419

Query: 121 GHVV-------------FSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYR----- 180
           G ++              SKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYR     
Sbjct: 420 GDILVYSKTEASMRSTCISKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRFVED 479

Query: 181 ------------RKGTPFICSPACKS-------------IFTMPYGSGSFVIYSDVSKKG 240
                       RKGTPFI SPACKS             +FTMPYGSGSFVIYSDVSKKG
Sbjct: 480 FSRIASSLTQLTRKGTPFIWSPACKSSFQKLKKKLVTTLVFTMPYGSGSFVIYSDVSKKG 539

Query: 241 LDCVLMQQVSI-VEVTSH------LAQLSVQPTLRQRIIVAQLN---------------- 297
           LDCVLMQQV   +++  H      +   + Q +L+      +LN                
Sbjct: 540 LDCVLMQQVVFALKIWRHYLYGEKIQIFTDQKSLKYFFTQKKLNMRQRRWLELVKDYDCE 599

[Close]

BLAST of Pay0018256 vs. ExPASy TrEMBL
Match: A0A5A7U8E6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001930 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 4.0e-93
Identity = 235/526 (44.68%), Postives = 255/526 (48.48%), Query Frame = 0


Query: 1    MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDK 60
            +VREYP++FPDELP LPP REIDFAIELE GTA ISRAPYR+A AELKELKV LQELL+K
Sbjct: 489  VVREYPDVFPDELPGLPPPREIDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLEK 548

Query: 61   -----------------GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDL 120
                             GYHQLRIRD+DIPKTAF SRYGHYEFIV SFGLTNA AVFMDL
Sbjct: 549  RFVWPRSHCLFQDRPAIGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDL 608

Query: 121  MNKV-----------------------------------------------------KKV 180
            MN+V                                                     KKV
Sbjct: 609  MNRVFKDFLDSFVIVFIDDILIYSKTEAEHEKHLHQVLETLRANKLYVKFSKCEFWLKKV 668

Query: 181  SFLGHVVFSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRKGTPFICSPACKSI 240
            +FLGHVV S+GVSVDP KI+ VT+WPR   VSE+RSFLGLAGYYRR    F       S+
Sbjct: 669  TFLGHVVSSEGVSVDPPKIEAVTNWPRLSTVSEIRSFLGLAGYYRRFVEDF-------SL 728

Query: 241  FTMPYGSGSFVIYSDVSKKGLDCVLMQQ-------------------------------- 297
              +P GSGSFVIYSD SKKGL CVLMQQ                                
Sbjct: 729  LIVPDGSGSFVIYSDASKKGLGCVLMQQGKANVVADALSRKVAHSAALITKQAPLLRDFE 788

[Close]

BLAST of Pay0018256 vs. ExPASy TrEMBL
Match: A0A5A7VGM5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00290 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 3.0e-88
Identity = 184/249 (73.90%), Postives = 189/249 (75.90%), Query Frame = 0


Query: 1   MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDK 60
           MVREYPNIFPDELPELP SREIDFAIELE GTASISRA YRI LAELKELKV LQELLDK
Sbjct: 278 MVREYPNIFPDELPELPTSREIDFAIELEPGTASISRASYRIDLAELKELKVQLQELLDK 337

Query: 61  GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKK-------VSFL 120
           GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKV K       + F+
Sbjct: 338 GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVFKDFLHIFVIVFI 397

Query: 121 GHVV-------------FSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYR----- 180
           G ++              SKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYR     
Sbjct: 398 GDILVYSKTEASMRSTCISKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRFVED 457

Query: 181 ------------RKGTPFICSPACKS-------------IFTMPYGSGSFVIYSDVSKKG 200
                       RKGTPFI SPACKS             +FTMPYGSGSFVIYSDVSKKG
Sbjct: 458 FSRIASSLTQLTRKGTPFIWSPACKSSFQKLKKKLVTTLVFTMPYGSGSFVIYSDVSKKG 517

[Close]

BLAST of Pay0018256 vs. ExPASy TrEMBL
Match: A0A5D3BWP3 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00380 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 7.3e-87
Identity = 226/573 (39.44%), Postives = 254/573 (44.33%), Query Frame = 0


Query: 1    MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDK 60
            +V +YP++FPDELP LPP REIDF IELE GTA ISR PYR+A AEL ELKV LQELLDK
Sbjct: 761  VVWKYPDVFPDELPRLPPPREIDFVIELEPGTAPISRDPYRMAPAELNELKVQLQELLDK 820

Query: 61   -------------------------------------------GYHQLRIRDNDIPKTAF 120
                                                       GYHQLRI+D+DIPKTAF
Sbjct: 821  GFIRPSVSPWGAPMLFVKKKDGIDDLCDQLQGATIFSKIDLRSGYHQLRIKDSDIPKTAF 880

Query: 121  HSRYGHYEFIVKSFGLTNATAVFMDLMNKVKK---------------------------- 180
             SRY HYEFIV SFGLTNA  +FMDLMN+V K                            
Sbjct: 881  RSRYEHYEFIVMSFGLTNAPTIFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKHL 940

Query: 181  --VSFLGHVVFSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYR------------ 240
              V+FL HVV ++GVS+DP KI+ VTSWPRP  +SE+RSFLGLAGYYR            
Sbjct: 941  HQVTFLDHVVSNEGVSMDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASP 1000

Query: 241  -----RKGTPFICSPACKSIF-------------TMPYGSGSFVIYSDVSKKGLDCVLMQ 297
                 RKGTPF+ SPAC+S F             TMP GSGSFVIYSD SKKG+ CVL+Q
Sbjct: 1001 LTQLTRKGTPFVWSPACESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQ 1060

[Close]

BLAST of Pay0018256 vs. NCBI nr
Match: XP_016902032.1 (PREDICTED: uncharacterized protein LOC107991507 [Cucumis melo])

HSP 1 Score: 560.5 bits (1443), Expect = 8.9e-156
Identity = 286/309 (92.56%), Postives = 287/309 (92.88%), Query Frame = 0


Query: 1   MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDK 60
           MVREYPNIFPDELPELP SREIDFAIELE GTASISRA YRI LAELKELKV LQELLDK
Sbjct: 1   MVREYPNIFPDELPELPTSREIDFAIELEPGTASISRASYRIDLAELKELKVQLQELLDK 60

Query: 61  GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKKVSFLGHVVFSK 120
           GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKKVSFLGHVVFSK
Sbjct: 61  GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKKVSFLGHVVFSK 120

Query: 121 GVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRKGTPFICSPACKS----------- 180
           GVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRKGTPFI SPACKS           
Sbjct: 121 GVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRKGTPFIWSPACKSSFQKLKKKLVT 180

Query: 181 --IFTMPYGSGSFVIYSDVSKKGLDCVLMQQVSIVEVTSHLAQLSVQPTLRQRIIVAQLN 240
             +FTMPYGSGSFVIYSDVSKKGLDCVLMQQVSIVEVTS LAQLSVQPTLRQRIIVAQLN
Sbjct: 181 TLVFTMPYGSGSFVIYSDVSKKGLDCVLMQQVSIVEVTSQLAQLSVQPTLRQRIIVAQLN 240

Query: 241 DPYLIDNHRLVEAGYQAKIGMAPFEALYGRCYRSPVCWGEVGEQRMLGPKLVQTTNAAIQ 297
           DPYLID HRLVE GYQAKIGMAPFEALYGRCYRSPVCWGEVGEQRMLGPKLVQTTNAAIQ
Sbjct: 241 DPYLIDKHRLVEVGYQAKIGMAPFEALYGRCYRSPVCWGEVGEQRMLGPKLVQTTNAAIQ 300

[Close]

BLAST of Pay0018256 vs. NCBI nr
Match: TYK22433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 392.1 bits (1006), Expect = 4.2e-105
Identity = 250/474 (52.74%), Postives = 264/474 (55.70%), Query Frame = 0


Query: 1   MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDK 60
           MVREYPNIFPDELPELP SREIDFAIELE GTASISRA YRI LAELKELKV LQELLDK
Sbjct: 300 MVREYPNIFPDELPELPTSREIDFAIELEPGTASISRASYRIDLAELKELKVQLQELLDK 359

Query: 61  GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKK-------VSFL 120
           GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKV K       + F+
Sbjct: 360 GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVFKDFLHIFVIVFI 419

Query: 121 GHVV-------------FSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYR----- 180
           G ++              SKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYR     
Sbjct: 420 GDILVYSKTEASMRSTCISKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRFVED 479

Query: 181 ------------RKGTPFICSPACKS-------------IFTMPYGSGSFVIYSDVSKKG 240
                       RKGTPFI SPACKS             +FTMPYGSGSFVIYSDVSKKG
Sbjct: 480 FSRIASSLTQLTRKGTPFIWSPACKSSFQKLKKKLVTTLVFTMPYGSGSFVIYSDVSKKG 539

Query: 241 LDCVLMQQVSI-VEVTSH------LAQLSVQPTLRQRIIVAQLN---------------- 297
           LDCVLMQQV   +++  H      +   + Q +L+      +LN                
Sbjct: 540 LDCVLMQQVVFALKIWRHYLYGEKIQIFTDQKSLKYFFTQKKLNMRQRRWLELVKDYDCE 599

[Close]

BLAST of Pay0018256 vs. NCBI nr
Match: KAA0051440.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 351.3 bits (900), Expect = 8.2e-93
Identity = 235/526 (44.68%), Postives = 255/526 (48.48%), Query Frame = 0


Query: 1    MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDK 60
            +VREYP++FPDELP LPP REIDFAIELE GTA ISRAPYR+A AELKELKV LQELL+K
Sbjct: 489  VVREYPDVFPDELPGLPPPREIDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLEK 548

Query: 61   -----------------GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDL 120
                             GYHQLRIRD+DIPKTAF SRYGHYEFIV SFGLTNA AVFMDL
Sbjct: 549  RFVWPRSHCLFQDRPAIGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDL 608

Query: 121  MNKV-----------------------------------------------------KKV 180
            MN+V                                                     KKV
Sbjct: 609  MNRVFKDFLDSFVIVFIDDILIYSKTEAEHEKHLHQVLETLRANKLYVKFSKCEFWLKKV 668

Query: 181  SFLGHVVFSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRKGTPFICSPACKSI 240
            +FLGHVV S+GVSVDP KI+ VT+WPR   VSE+RSFLGLAGYYRR    F       S+
Sbjct: 669  TFLGHVVSSEGVSVDPPKIEAVTNWPRLSTVSEIRSFLGLAGYYRRFVEDF-------SL 728

Query: 241  FTMPYGSGSFVIYSDVSKKGLDCVLMQQ-------------------------------- 297
              +P GSGSFVIYSD SKKGL CVLMQQ                                
Sbjct: 729  LIVPDGSGSFVIYSDASKKGLGCVLMQQGKANVVADALSRKVAHSAALITKQAPLLRDFE 788

[Close]

BLAST of Pay0018256 vs. NCBI nr
Match: KAA0067512.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 335.1 bits (858), Expect = 6.1e-88
Identity = 184/249 (73.90%), Postives = 189/249 (75.90%), Query Frame = 0


Query: 1   MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDK 60
           MVREYPNIFPDELPELP SREIDFAIELE GTASISRA YRI LAELKELKV LQELLDK
Sbjct: 278 MVREYPNIFPDELPELPTSREIDFAIELEPGTASISRASYRIDLAELKELKVQLQELLDK 337

Query: 61  GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVKK-------VSFL 120
           GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKV K       + F+
Sbjct: 338 GYHQLRIRDNDIPKTAFHSRYGHYEFIVKSFGLTNATAVFMDLMNKVFKDFLHIFVIVFI 397

Query: 121 GHVV-------------FSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYR----- 180
           G ++              SKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYR     
Sbjct: 398 GDILVYSKTEASMRSTCISKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRRFVED 457

Query: 181 ------------RKGTPFICSPACKS-------------IFTMPYGSGSFVIYSDVSKKG 200
                       RKGTPFI SPACKS             +FTMPYGSGSFVIYSDVSKKG
Sbjct: 458 FSRIASSLTQLTRKGTPFIWSPACKSSFQKLKKKLVTTLVFTMPYGSGSFVIYSDVSKKG 517

[Close]

BLAST of Pay0018256 vs. NCBI nr
Match: TYK03544.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 1.5e-86
Identity = 226/573 (39.44%), Postives = 254/573 (44.33%), Query Frame = 0


Query: 1    MVREYPNIFPDELPELPPSREIDFAIELESGTASISRAPYRIALAELKELKVHLQELLDK 60
            +V +YP++FPDELP LPP REIDF IELE GTA ISR PYR+A AEL ELKV LQELLDK
Sbjct: 761  VVWKYPDVFPDELPRLPPPREIDFVIELEPGTAPISRDPYRMAPAELNELKVQLQELLDK 820

Query: 61   -------------------------------------------GYHQLRIRDNDIPKTAF 120
                                                       GYHQLRI+D+DIPKTAF
Sbjct: 821  GFIRPSVSPWGAPMLFVKKKDGIDDLCDQLQGATIFSKIDLRSGYHQLRIKDSDIPKTAF 880

Query: 121  HSRYGHYEFIVKSFGLTNATAVFMDLMNKVKK---------------------------- 180
             SRY HYEFIV SFGLTNA  +FMDLMN+V K                            
Sbjct: 881  RSRYEHYEFIVMSFGLTNAPTIFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKHL 940

Query: 181  --VSFLGHVVFSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYR------------ 240
              V+FL HVV ++GVS+DP KI+ VTSWPRP  +SE+RSFLGLAGYYR            
Sbjct: 941  HQVTFLDHVVSNEGVSMDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASP 1000

Query: 241  -----RKGTPFICSPACKSIF-------------TMPYGSGSFVIYSDVSKKGLDCVLMQ 297
                 RKGTPF+ SPAC+S F             TMP GSGSFVIYSD SKKG+ CVL+Q
Sbjct: 1001 LTQLTRKGTPFVWSPACESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQ 1060

[Close]

BLAST of Pay0018256 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-08
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 109 KVSFLG--HVVFSKGVSVDPTKIKVVTSWPRPFKVSEVRSFLGLAGYYRR 157
           ++++LG  H++  +GVS DP K++ +  WP P   +E+R FLGL GYYRR
Sbjct: 29  QIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRR 78

The following BLAST results are available for this feature:

BLAST of Pay0018256 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	3.2e-15	30.92	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.0e-13	28.29	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	6.7e-13	27.11	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	4.1e-10	28.48	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P92523	1.9e-07	46.00	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Pay0018256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1D1	4.3e-156	92.56	uncharacterized protein LOC107991507 OS=Cucumis melo OX=3656 GN=LOC107991507 PE=...	[more]
A0A5D3DFV7	2.0e-105	52.74	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U8E6	4.0e-93	44.68	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VGM5	3.0e-88	73.90	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BWP3	7.3e-87	39.44	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw...	[more]

BLAST of Pay0018256 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902032.1	8.9e-156	92.56	PREDICTED: uncharacterized protein LOC107991507 [Cucumis melo]	[more]
TYK22433.1	4.2e-105	52.74	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051440.1	8.2e-93	44.68	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0067512.1	6.1e-88	73.90	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK03544.1	1.5e-86	39.44	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]

BLAST of Pay0018256 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.3e-08	46.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..60
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 63..95 e-value: 8.1E-14 score: 53.4
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 59..107
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 106..156
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 106..156 coord: 59..107
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 58..113 e-value: 8.1E-14 score: 53.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 127..168 e-value: 5.5E-7 score: 31.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0018256.1	Pay0018256.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity