Pay0018238 (gene) Melon (Payzawat) v1

Overview
NamePay0018238
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr01: 8713341 .. 8715165 (+)
RNA-Seq ExpressionPay0018238
SyntenyPay0018238
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAATACATTTGCTCCACAGATAGTCCTCACTAGTACACACTTGCGATCTGCAATCGATGCGTGTATGAAATCAGCAGTGGATATAAAGACCAAGTTGGTAAGTATTGCATATGGGTATGTGATTATATTTTGGTTGGTAAGGTAACAATATCTTTAAAAATAACTGGCAAAAATTGAAAGTTTTTGCCAAAGTATCTTCATCGGATCACAAAGCCTGACAAAAACTACACTATTATTTGGTTTGGTTCATTGCTTTGTAAAACCAATCTTTTTAAAAAAGACATTTGTAAGAATTATGGTGGAATTAAGGTTCATTTTGTGTAACTATTAATAACAAATATCACTCAATTATTTTATCTTTTAAAGACAGATCAATTTGTAGAAACAAACAAAGCTATAGATTCTTGGTGATCTTTAGGCCAATTAACATATGATTTCTATAATCTCTAGTGGTCAAATGGAATTGATTCATGTGGGATCTTTTTTCTTTCTTTCAAAAATTGGGAGACAGTCATTCATTGCCAGGCTTTAATGTTGAGAAACCACATTGCAAAACCAAGCCATATGGTTTGATAAATAGACTAATAATTGTTGTTATTATGATTATTAATATTATCATTGAGTACTAGTGGTTTGAATATTTGTAAGGAGACAAAGAGGCAATGGATGGTGTTTAATTAAATCTTAGGTTATAATGTGAATGAATCATTATTTTTGGTACATTTGTACGTTTGTCACTCTCTCTATTATGGATCCGTACGTTTAAATGAAATCTTTTGGATGGTTGACCTAATCTTGTGGCTACAAGATTACATTAAGAATTTGCTCACATGCTTATGCCCCACATCCATTTATTCATCCTCTCAATATTTGGTGACTTGATGACCTCAATGTTCAAACGCTTTCTCCTCTTGATCCAAATGTAATATTAGCACTTGTATGCCGGTGTTTTGTTGATCTAAAAGTTAACATGTTTTAAACCCTACAAGTGCAAATATTAGATTTTTTTTAGATAGTGTGTCAAATGTTTTTTGCCCTCTATCATATCATTACAACGTTCAAATTTTATGATACTTAAGATTAACAAATAGATCGATACGAAACACAGTGGTTAAGTGCTCCTCTTGGCTCCTATGTGCATCAACTCTTGGTCTTGATCCAAATGTAACTTCAGTGGTCAAACATTAGTTTATAATGGTTGTTTCTTACTCATATTTTTTTCATCTTGCAAAATTGAATTACCTTAAGAAATGTTAAGATTTTTACCTTGGTAAGTTTCTTTTTGTTAATTATACACGTAGAGTGTAAAGTTCTAATAGAGGAAAAATAAATTATTCGTTAGAAACTACAGCAATGACGTAAAATCGAAAATCGTTCATTTTGTTGTTGGGATGTATAGTAATACTAAATTAAAATTCATGAAACGGAAGAACAACGGATATGATGAAATTACTAATATATTTGAGAAAGTTTTCTTAATGCAATAGAAACAGGATGAATCAAATGGATGTTAATACGTACCGACTTTACACCAAAAGTTGTTTTGATTCATAAATGACACTCTCAGTTCAAGTGGAATTCTGACAAAGAATTTTGTATTCTTGTTCGTTTTTTGAGTGAACTAATAATAGAGTCATAGATTGATGATGCTTACGCTACTCTTATCCTTGCAGGCAATGGATTTTCATTTCATTCAAATTCATGCACCTTACGGTGAAGGTGATTGCTGTGTTGTTTTGTTCAGTGCCCTTCACATGTTCGACAAAACGCCTGACTTAACCTCTTCTCGTGTCTCCCTCATGGCGTCTCTTAAGGACTAG

mRNA sequence

ATGTGCAATACATTTGCTCCACAGATAGTCCTCACTAGTACACACTTGCGATCTGCAATCGATGCGTGTATGAAATCAGCAGTGGATATAAAGACCAAGTTGGCAATGGATTTTCATTTCATTCAAATTCATGCACCTTACGGTGAAGGTGATTGCTGTGTTGTTTTGTTCAGTGCCCTTCACATGTTCGACAAAACGCCTGACTTAACCTCTTCTCGTGTCTCCCTCATGGCGTCTCTTAAGGACTAG

Coding sequence (CDS)

ATGTGCAATACATTTGCTCCACAGATAGTCCTCACTAGTACACACTTGCGATCTGCAATCGATGCGTGTATGAAATCAGCAGTGGATATAAAGACCAAGTTGGCAATGGATTTTCATTTCATTCAAATTCATGCACCTTACGGTGAAGGTGATTGCTGTGTTGTTTTGTTCAGTGCCCTTCACATGTTCGACAAAACGCCTGACTTAACCTCTTCTCGTGTCTCCCTCATGGCGTCTCTTAAGGACTAG

Protein sequence

MCNTFAPQIVLTSTHLRSAIDACMKSAVDIKTKLAMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
Homology
[Close]
BLAST of Pay0018238 vs. ExPASy TrEMBL
Match: A0A5A7SN01 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00740 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 8   QIVLTSTHLRSAIDACMKSAVDIKTKLAMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTP 67
           QIVLT THLRSAIDACMKSAVDIKTKLAMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTP
Sbjct: 445 QIVLTGTHLRSAIDACMKSAVDIKTKLAMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTP 504

Query: 68  DLTSSRVSLMASLKD 83
           DLTSSRVSLMASLKD
Sbjct: 505 DLTSSRVSLMASLKD 519

[Close]
BLAST of Pay0018238 vs. ExPASy TrEMBL
Match: A0A0A0KKX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507500 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.3e-13
Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 26 SAVDIKTKLAMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD 83
          S +  K   AMDFHFIQIHAP+GE  C V L  ALHMFDKTPD TSS VSLMASLKD
Sbjct: 8  SGILTKNFFAMDFHFIQIHAPFGEDVCSVFLLCALHMFDKTPDSTSSHVSLMASLKD 64

[Close]
BLAST of Pay0018238 vs. NCBI nr
Match: KAA0025621.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12496.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 3.5e-33
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 8   QIVLTSTHLRSAIDACMKSAVDIKTKLAMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTP 67
           QIVLT THLRSAIDACMKSAVDIKTKLAMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTP
Sbjct: 445 QIVLTGTHLRSAIDACMKSAVDIKTKLAMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTP 504

Query: 68  DLTSSRVSLMASLKD 83
           DLTSSRVSLMASLKD
Sbjct: 505 DLTSSRVSLMASLKD 519

[Close]
BLAST of Pay0018238 vs. NCBI nr
Match: KGN48977.1 (hypothetical protein Csa_003732 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 26 SAVDIKTKLAMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD 83
          S +  K   AMDFHFIQIHAP+GE  C V L  ALHMFDKTPD TSS VSLMASLKD
Sbjct: 8  SGILTKNFFAMDFHFIQIHAPFGEDVCSVFLLCALHMFDKTPDSTSSHVSLMASLKD 64

The following BLAST results are available for this feature:
BLAST of Pay0018238 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0018238 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SN011.7e-3398.67Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0KKX07.3e-1371.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507500 PE=4 SV=1[more]
BLAST of Pay0018238 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0025621.13.5e-3398.67pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12496... [more]
KGN48977.11.5e-1271.93hypothetical protein Csa_003732 [Cucumis sativus][more]
BLAST of Pay0018238 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0018238.1Pay0018238.1mRNA