Pay0018136 (gene) Melon (Payzawat) v1

Overview


Name	Pay0018136
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein, putative, unclassified
Location	chr11: 24519655 .. 24521189 (-)
RNA-Seq Expression	Pay0018136
Synteny	Pay0018136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTGGACTTCGGGACCTCAGCTTGGGTTAGGGATTGTCTAACAAGTGCTGCTGTTGCGGATAATCCCATGGATTTTTGGCGTAGAAGAAGGCTGGATATCATCATTATTTCTTCCATGTTTTAGAAAATGCAAGAGGTAGGTTTGTCATTCTATCCCTAGAATCTTTTAAAGGAAAACGAGAATTTTCATATCGGAAGGGAGAAAAGGAAAGGGTTGGAGATATTTAGCAGAGGAGATATCAGTTTTGCTTCCAGGATCTGGAAGGGGCAATCAAAATTAGTTTTGCTTTCGTGGTCTGGAAGGGGCAATCTGAAGTCAGGTTAGTAACCCGACCAACTAAGGACCGATTGAAGAAAGGGAAAGAAGGGTCTCAGCCGGCGACAGTTTTGCGCAAGGAAAATAAGGGGCCGAAAAGTCCAAAATTGAGAAGTGCTCAAAATGACGGGGATGTTGGGAAGAAGATGACAAATGGAAGTGGAAAGGAGGTGGGATTTGCATTTGAATGGAAACTGACAGTCATAATTAAGAAATTAAGAGCTGCATCAGATTGAGGGGTTTTGAAGCAGTTGTCTGAACGGATTCTGTCCATTTGTTGTGGCTTTAAAATTTTTTGTGCGAATCTTGTAGTTGGGATTTGTGGGTCTGATTCAAAAGCAGAAATTATCGGATCCAACATTAATGAGTTCTCTTTTCACCTTTGGGACTTTTGTGTGATTGAAGAGGAGAGAAAGCAGGCATTCCGAAGGGGGGGGGGACGGATTACGGCCCTTAATATTCCACCATTCTTATGAACGAGGGAGTTATAGATTCTTTGGTAGCTTGGTGTGGAGGTCTTAATGAAGAAGGAGAACTTTCCTTTGAAACTGATTGGATGAGCGATGTGTGCTTTAAGGTCGTAGGCAACAAGGATGGGTTTAAAGTGTGTTGTGTTGTGAACTACCATCAGTATTCTTTTTTTCGGTGAAATTTTATGCTGGCCGAAGCGAAGAGCGTAAGGGTAAAAAAATGTTAGAAGAAGGTACGAGTAGGACGACCCCTGATCTTTCAGTTTGTCTTTAGGTCAGAGGAGGAAAGAAGGAGATCATGTGAATGTGATGAATTTGAATTGTGCTAAAGGTGTTGGGTCGAGTGGAGTCAAGGCTCATAGCATCTATGAAATGGATAGAACTGTCTTAGGGAGTCTTGTTGAAGTGGGTTGTGTAAGTGATCTGAAGGTGGGTTGGGTTGAGTCGGATCTTAAGGAAGTTGGGGATTATTCTCCGGGGGCTCAGAAAAGAGCTTTGTTGAGTAAAGGTAATATCCGGAAAAGGTAGCCGACTTCTAGAAGGGAGGCACATGAGAAGGTTCAAGTTAAAGAAATGGGCCTTAGTTCTTATTAACAAAAATTAGGTTTTGATTTGAAATCAACGATAAAAGCTAAACAGTACCCAAGGGTTTTTTGCGCAAAGGAACTGGGGAATGGGCCTTCGGATATGAGTTTTGATGAAGAAGAATCCGAAGATGAATCTGGATCTGACCTATTGATTTAG

mRNA sequence

ATGGAGCTGGACTTCGGGACCTCAGCTTGGGGGCAATCTGAAGTCAGGTTAGTAACCCGACCAACTAAGGACCGATTGAAGAAAGGGAAAGAAGGGTCTCAGCCGGCGACAGTTTTGCGCAAGGAAAATAAGGGGCCGAAAAGTCCAAAATTGAGAAGTGCTCAAAATGACGGGGATGTTGGGAAGAAGATGACAAATGGAAGTGGAAAGGAGAGGAGGAAAGAAGGAGATCATGTGAATGTGATGAATTTGAATTGTGCTAAAGGTGTTGGGTCGAGTGGAGTCAAGGCTCATAGCATCTATGAAATGGATAGAACTGTCTTAGGGAGTCTTGTTGAAGTGGGTTGTGTAAGTGATCTGAAGGTGGGTTGGGTTGAGTCGGATCTTAAGGAAGTTGGGGATTATTCTCCGGGGGCTCAGAAAAGAGCTTTGTTGAGTAAAGGTTTTGATTTGAAATCAACGATAAAAGCTAAACAGTACCCAAGGGTTTTTTGCGCAAAGGAACTGGGGAATGGGCCTTCGGATATGAGTTTTGATGAAGAAGAATCCGAAGATGAATCTGGATCTGACCTATTGATTTAG

Coding sequence (CDS)

ATGGAGCTGGACTTCGGGACCTCAGCTTGGGGGCAATCTGAAGTCAGGTTAGTAACCCGACCAACTAAGGACCGATTGAAGAAAGGGAAAGAAGGGTCTCAGCCGGCGACAGTTTTGCGCAAGGAAAATAAGGGGCCGAAAAGTCCAAAATTGAGAAGTGCTCAAAATGACGGGGATGTTGGGAAGAAGATGACAAATGGAAGTGGAAAGGAGAGGAGGAAAGAAGGAGATCATGTGAATGTGATGAATTTGAATTGTGCTAAAGGTGTTGGGTCGAGTGGAGTCAAGGCTCATAGCATCTATGAAATGGATAGAACTGTCTTAGGGAGTCTTGTTGAAGTGGGTTGTGTAAGTGATCTGAAGGTGGGTTGGGTTGAGTCGGATCTTAAGGAAGTTGGGGATTATTCTCCGGGGGCTCAGAAAAGAGCTTTGTTGAGTAAAGGTTTTGATTTGAAATCAACGATAAAAGCTAAACAGTACCCAAGGGTTTTTTGCGCAAAGGAACTGGGGAATGGGCCTTCGGATATGAGTTTTGATGAAGAAGAATCCGAAGATGAATCTGGATCTGACCTATTGATTTAG

Protein sequence

MELDFGTSAWGQSEVRLVTRPTKDRLKKGKEGSQPATVLRKENKGPKSPKLRSAQNDGDVGKKMTNGSGKERRKEGDHVNVMNLNCAKGVGSSGVKAHSIYEMDRTVLGSLVEVGCVSDLKVGWVESDLKEVGDYSPGAQKRALLSKGFDLKSTIKAKQYPRVFCAKELGNGPSDMSFDEEESEDESGSDLLI

Homology

[Close]

BLAST of Pay0018136 vs. ExPASy TrEMBL
Match: A0A5A7UMB2 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G005030 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.1e-56
Identity = 135/211 (63.98%), Postives = 145/211 (68.72%), Query Frame = 0


Query: 1   MELDFGTSAW-----------------GQSE--------------VRLVTRPTKDRLKKG 60
           MELDFGTSAW                 G  E               RLVTRPTKDRL+KG
Sbjct: 35  MELDFGTSAWVRDCLTSAAVGIIPWIFGVEEGWISSLFLPCFRKCKRLVTRPTKDRLEKG 94

Query: 61  KEGSQPATVLRKENKGPKSPKLRSAQNDGDVGKKMTNGSGKE------------------ 120
           K GSQPATVLRKENKGPK P+LRSAQND DVGKKMT+GSGKE                  
Sbjct: 95  KAGSQPATVLRKENKGPKGPELRSAQNDRDVGKKMTDGSGKEVGFAFEWKLTVIIKKLRA 154

Query: 121 --RRKEGDHVNVMNLNCAKGVGSSGVKAHSIYEMDRTVLGSLVEVGCVSDLKVGWVESDL 161
             RR+EGDH  VMNLNCAKGVGSSGVKAHS+YEMDRTVLGSLVEVGCVS LKVGWV+SDL
Sbjct: 155 GHRREEGDH--VMNLNCAKGVGSSGVKAHSVYEMDRTVLGSLVEVGCVSVLKVGWVDSDL 214

[Close]

BLAST of Pay0018136 vs. ExPASy TrEMBL
Match: A0A5D3C9P5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00120 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.1e-56
Identity = 135/211 (63.98%), Postives = 145/211 (68.72%), Query Frame = 0


Query: 1   MELDFGTSAW-----------------GQSE--------------VRLVTRPTKDRLKKG 60
           MELDFGTSAW                 G  E               RLVTRPTKDRL+KG
Sbjct: 35  MELDFGTSAWVRDCLTSAAVGIIPWIFGVEEGWISSLFLPCFRKCKRLVTRPTKDRLEKG 94

Query: 61  KEGSQPATVLRKENKGPKSPKLRSAQNDGDVGKKMTNGSGKE------------------ 120
           K GSQPATVLRKENKGPK P+LRSAQND DVGKKMT+GSGKE                  
Sbjct: 95  KAGSQPATVLRKENKGPKGPELRSAQNDRDVGKKMTDGSGKEVGFAFEWKLTVIIKKLRA 154

Query: 121 --RRKEGDHVNVMNLNCAKGVGSSGVKAHSIYEMDRTVLGSLVEVGCVSDLKVGWVESDL 161
             RR+EGDH  VMNLNCAKGVGSSGVKAHS+YEMDRTVLGSLVEVGCVS LKVGWV+SDL
Sbjct: 155 GHRREEGDH--VMNLNCAKGVGSSGVKAHSVYEMDRTVLGSLVEVGCVSVLKVGWVDSDL 214

[Close]

BLAST of Pay0018136 vs. NCBI nr
Match: KAA0054681.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 2.4e-56
Identity = 135/211 (63.98%), Postives = 145/211 (68.72%), Query Frame = 0


Query: 1   MELDFGTSAW-----------------GQSE--------------VRLVTRPTKDRLKKG 60
           MELDFGTSAW                 G  E               RLVTRPTKDRL+KG
Sbjct: 35  MELDFGTSAWVRDCLTSAAVGIIPWIFGVEEGWISSLFLPCFRKCKRLVTRPTKDRLEKG 94

Query: 61  KEGSQPATVLRKENKGPKSPKLRSAQNDGDVGKKMTNGSGKE------------------ 120
           K GSQPATVLRKENKGPK P+LRSAQND DVGKKMT+GSGKE                  
Sbjct: 95  KAGSQPATVLRKENKGPKGPELRSAQNDRDVGKKMTDGSGKEVGFAFEWKLTVIIKKLRA 154

Query: 121 --RRKEGDHVNVMNLNCAKGVGSSGVKAHSIYEMDRTVLGSLVEVGCVSDLKVGWVESDL 161
             RR+EGDH  VMNLNCAKGVGSSGVKAHS+YEMDRTVLGSLVEVGCVS LKVGWV+SDL
Sbjct: 155 GHRREEGDH--VMNLNCAKGVGSSGVKAHSVYEMDRTVLGSLVEVGCVSVLKVGWVDSDL 214

[Close]

BLAST of Pay0018136 vs. NCBI nr
Match: TYK08591.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 2.4e-56
Identity = 135/211 (63.98%), Postives = 145/211 (68.72%), Query Frame = 0


Query: 1   MELDFGTSAW-----------------GQSE--------------VRLVTRPTKDRLKKG 60
           MELDFGTSAW                 G  E               RLVTRPTKDRL+KG
Sbjct: 35  MELDFGTSAWVRDCLTSAAVGIIPWIFGVEEGWISSLFLPCFRKCKRLVTRPTKDRLEKG 94

Query: 61  KEGSQPATVLRKENKGPKSPKLRSAQNDGDVGKKMTNGSGKE------------------ 120
           K GSQPATVLRKENKGPK P+LRSAQND DVGKKMT+GSGKE                  
Sbjct: 95  KAGSQPATVLRKENKGPKGPELRSAQNDRDVGKKMTDGSGKEVGFAFEWKLTVIIKKLRA 154

Query: 121 --RRKEGDHVNVMNLNCAKGVGSSGVKAHSIYEMDRTVLGSLVEVGCVSDLKVGWVESDL 161
             RR+EGDH  VMNLNCAKGVGSSGVKAHS+YEMDRTVLGSLVEVGCVS LKVGWV+SDL
Sbjct: 155 GHRREEGDH--VMNLNCAKGVGSSGVKAHSVYEMDRTVLGSLVEVGCVSVLKVGWVDSDL 214

The following BLAST results are available for this feature:

BLAST of Pay0018136 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0018136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMB2	1.1e-56	63.98	Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3C9P5	1.1e-56	63.98	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Pay0018136 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054681.1	2.4e-56	63.98	retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]	[more]
TYK08591.1	2.4e-56	63.98	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0018136 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0018136.1	Pay0018136.1	mRNA