Pay0017516 (gene) Melon (Payzawat) v1

Overview
NamePay0017516
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description30S ribosomal protein S17, chloroplastic
Locationchr01: 34880954 .. 34883376 (+)
RNA-Seq ExpressionPay0017516
SyntenyPay0017516
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAAAGCTTGAAGAAGCTCTCAATTTCTTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGGCCTCTTCATCACCGTCGCCATTGGCCTCCCAAACCCCCAATTTCCTTCCCTCCATTAGGGCCATGAGGTCCCTGCAAGGCCGCGTGGTTTGTGCCACCAACGACAAAACCGTCGCCGTTGAGGTAGTCCGATTAGCGCCTCATCCGAAATATAAGCGTCGGATTAGAATCAAGAAGAAGTACCAGGCGCATGATCCGGATAACCAGTTCAAGGTTGGAGATTTTGTGGAGCTTGAAAAATGCCGTCCGATTAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCAGCGAGGACTTCGAAGAAGAAAGCGGCGGAAGGCGGTGAGGGAGGAGAGCTTGGAATTCCATTGGAGTCTCAGCAAGAACAGGTTTGATTGTAATTGGTTGATTTTGTGGATCTGAATGTTGTTTGTGGTTTGATGAATGACTCGTGAATGTTGTATTGATGAGACTGGACCCAAGTTGTCCGAATTTTATAATATTTTCTTTTTCGAATTCTTTTTTGAGTCTACATCTCTGCCATTGCCATTGCCATTGCCATTGATGATGAACAAAGTGTTGTTGCTATTCAAATTTTCTTGATTCTTCCTTTTGGTTGAGAAGATAGTCTGATTCGAATTTCATGGTATCGTTACGACTAAACAAACTCTAACATTTTAGTCCCAAACTTTTTAAGAATATCCTAATTCTCTAATCCCAAATCTAGATGATTTCTTTTGAATTCGAGTTTTTTAAAATGGGTTTTAAACTAGTTTTCAAGAATTCTTCTAAAATGTACGAAACAAGAAGAGAATCGAGAATGGGTAACGAAAGTGAGGTCGCAAGTGTCATGCCAATAAGAACGATCGAGAAGCCAATCATCAAAAGGTTTTTATGAGCGTTTTACAATGTAGTTATGGAATGTTTGCACGAGTGCTTCACTAGGACGTTATGTACAATGAGTCACAATGGCACAAGACAATGTCAAAAGAAAGTTTAATTCCTATTGAATTCTAAAATTTGCCATATTTATAAAGTTTGAGTGTCTGAGACACCAAATAAAGTTCAACAACAAGATTGACTTTTTTCACTAAATTTGATCTTTTAGTTTTATTATGCTTACTACATTAACAAAGGAAAAACACAAAGAAGATGTTTGGACATTATTGATCAATAAAGCAAGGTAATTGTCACATATAAGTATATTTGAATTGATACACATTAAACTTTTTATAGTACTTCAATATTATGTATTTTTTTTCTTTTTAATACAACAATTATGGAGTTTAGAATTGAATTTCGTATTTATCATTATTTATCAATAATTTAATATATTTAAAACATGCAAGTTTTTAACCTACGTATATATTCTTTTAAGAACAAAAACTTACGGTCAGTTTTCGAAAACAGTAAAGAAAATTTCTTGAACCGAATTATGGAGGGATTTGAGAGAACTTCAGTACTGTTTCTCCAACGAATATTTTAACATACTCGACGGAAGCGTACGTTCGGCTGTTGGAGAGGGACTCACTAGGATTTGAGAAGCTACTGTTAGCAATGAGCCTCCTGTTTCCCTCTCTTCTTTGCTAGAACTGATAACCAATGGCCTTGTTGGGTGGCCATCCGGAAGTATTGAGAACCCTGTCGGTAATGTCGTGATGTTGCCTGAGTCGAACCCGGCCATTACAGACTTCATACTGTTCATGTCAACTTCAGCGTAGACAACCGTTGATTCGTATTCATTTGTTAGACTATCTTGTAGAATCCACTTGTTGCTTTCGTCTGATTTTATTGCCTACATTAGTCATTTGTAATTGAATTATATCTCAACGGTTTATAGGTTGTGACAACGTACAACTTGCATGTGAAAAGAGAGGAGAGGATACTCACTTGGATAGTAACCGCATTGCCTCGATTTTGTCCTTTGGCAAAGTTTGCTAACATTTCTACTTGACCGCCACTTAACATCACATCCCACTAAAAGTTTCATGGTTCAAAACGGTTATGTTAAAACTCTGAGATAATTAGATTTACCATAAGCTATTAATGATCTAAGAATATATAAAAGTAAAACTTCATGTATTTAAACTCCGATATAATGTCATTTCCTTCTAAAACCCTCAAATCTAATTTACATTCATATTTATGTTAATAACAATTAAGGAGGTATATATGTTTTAATTAAGAGGAGCGTACTATATATAAATAGACAACGCTACTAATTTGGAGTTGTATTATAATATAGCTATCTATAAAATAAATATCCTTTGCATTGATACAATGTTACTACTTCTACTTGATTGTTCGATGAACAAAGATTTAG

mRNA sequence

ATGTCTACAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAAAGCTTGAAGAAGCTCTCAATTTCTTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGGCCTCTTCATCACCGTCGCCATTGGCCTCCCAAACCCCCAATTTCCTTCCCTCCATTAGGGCCATGAGGTCCCTGCAAGGCCGCGTGGTTTGTGCCACCAACGACAAAACCGTCGCCGTTGAGGTAGTCCGATTAGCGCCTCATCCGAAATATAAGCGTCGGATTAGAATCAAGAAGAAGTACCAGGCGCATGATCCGGATAACCAGTTCAAGGTTGGAGATTTTGTGGAGCTTGAAAAATGCCGTCCGATTAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCAGCGAGGACTTCGAAGAAGAAAGCGGCGGAAGGCGGTGAGGGAGGAGAGCTTGGAATTCCATTGGAGTCTCAGCAAGAACAGATTTAG

Coding sequence (CDS)

ATGTCTACAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAAAGCTTGAAGAAGCTCTCAATTTCTTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGGCCTCTTCATCACCGTCGCCATTGGCCTCCCAAACCCCCAATTTCCTTCCCTCCATTAGGGCCATGAGGTCCCTGCAAGGCCGCGTGGTTTGTGCCACCAACGACAAAACCGTCGCCGTTGAGGTAGTCCGATTAGCGCCTCATCCGAAATATAAGCGTCGGATTAGAATCAAGAAGAAGTACCAGGCGCATGATCCGGATAACCAGTTCAAGGTTGGAGATTTTGTGGAGCTTGAAAAATGCCGTCCGATTAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCAGCGAGGACTTCGAAGAAGAAAGCGGCGGAAGGCGGTGAGGGAGGAGAGCTTGGAATTCCATTGGAGTCTCAGCAAGAACAGATTTAG

Protein sequence

MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQI
Homology
[Close]
BLAST of Pay0017516 vs. ExPASy Swiss-Prot
Match: P16180 (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS17 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.1e-44
Identity = 98/144 (68.06%), Postives = 116/144 (80.56%), Query Frame = 0 

Query: 18  SLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIRAMRSLQGRVVCATNDKT 77
           SL+ L +SS F HGSTPLS LSK +S P+    + P  +P IRAM+++QGRVVCAT+DKT
Sbjct: 9   SLQALKLSSPFAHGSTPLSSLSKPNSFPN---HRMPALVPVIRAMKTMQGRVVCATSDKT 68

Query: 78  VAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPA 137
           VAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPISK K+F+A+PV A
Sbjct: 69  VAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIA 128

Query: 138 RTSKKKAAEGGEGGELGIPLESQQ 162
           R ++K  AE G    LG+PLESQQ
Sbjct: 129 RAARK--AEAGGDELLGLPLESQQ 147

[Close]
BLAST of Pay0017516 vs. ExPASy Swiss-Prot
Match: P82137 (30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 5.7e-38
Identity = 98/162 (60.49%), Postives = 112/162 (69.14%), Query Frame = 0 

Query: 7   SSSLLQIPPLQSLKKLSISSSFLHGSTP----LSFLSKASSSPSPLASQTPNFLPSIRAM 66
           S SLL+ PPL S    S  + FLHG+T     L   S  S S SP +S T    P I+AM
Sbjct: 4   SFSLLK-PPLSS----SNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAM 63

Query: 67  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCR 126
           RS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQAHDPDNQFKVGD+V+L+KCR
Sbjct: 64  RSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCR 123

Query: 127 PISKMKTFLAIPVPARTSKKKAAE--GGEGGELGIPLESQQE 163
           PISK KTFLA+    R S     +       ELGIPLESQ E
Sbjct: 124 PISKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVE 160

[Close]
BLAST of Pay0017516 vs. ExPASy Swiss-Prot
Match: P17092 (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-35
Identity = 78/128 (60.94%), Postives = 96/128 (75.00%), Query Frame = 0 

Query: 35  LSFLSKASSSPSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRR 94
           L+  S   SSP           P+I+AM++++G+VVCA+ +KTVAVEV RLAPHPKY++R
Sbjct: 11  LNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKR 70

Query: 95  IRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELG 154
           IR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P P+R SKK     G  GELG
Sbjct: 71  IRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKK----AGSSGELG 130

Query: 155 IPLESQQE 163
           IPL+SQQE
Sbjct: 131 IPLQSQQE 134

[Close]
BLAST of Pay0017516 vs. ExPASy Swiss-Prot
Match: Q9TJN6 (30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 78/142 (54.93%), Postives = 90/142 (63.38%), Query Frame = 0 

Query: 22  LSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVE 81
           L +SS F+  S P          P PL+S        I A R L GRVV    DKTV VE
Sbjct: 2   LLLSSPFVSVSPP----------PPPLSSHGARPALRIEAARQLTGRVVTTKADKTVGVE 61

Query: 82  VVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSK 141
           VVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL+  RPISK K FLAIP+P R ++
Sbjct: 62  VVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTR 121

Query: 142 KKAAEGGEGGELGIPLESQQEQ 164
           +K+       +L  PL+S  +Q
Sbjct: 122 RKS-------QLLPPLQSDDDQ 126

[Close]
BLAST of Pay0017516 vs. ExPASy Swiss-Prot
Match: Q9ZST1 (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 72/131 (54.96%), Postives = 86/131 (65.65%), Query Frame = 0 

Query: 32  STPLSFLSKASSSPSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKY 91
           S+P+       S  SP A         I+A + L GRVV    DKTV VEVVRLAPHPKY
Sbjct: 9   SSPVRVQGNGGSGASPWAGAATAL--RIQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKY 68

Query: 92  KRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARTSKKKAAEGGEGG 151
           KRR RIKKKYQAHDPDNQFKVGD VEL + RPISK K FLA+P+P R +++K+       
Sbjct: 69  KRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISKTKHFLAVPLPPRDTRRKS------- 128

Query: 152 ELGIPLESQQE 163
           +L  PL+SQ +
Sbjct: 129 QLLPPLQSQSQ 130

[Close]
BLAST of Pay0017516 vs. ExPASy TrEMBL
Match: A0A5A7UW29 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002170 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.6e-80
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60
           MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQI 165
           CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQ+
Sbjct: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]
BLAST of Pay0017516 vs. ExPASy TrEMBL
Match: A0A1S3CGC8 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.2e-80
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60
           MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSK SSSPSPLASQTPNFLPSIR
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSPSPLASQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQI 165
           CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQ+
Sbjct: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]
BLAST of Pay0017516 vs. ExPASy TrEMBL
Match: A0A0A0K952 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446990 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 0 

Query: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60
           MS TLTSSSLLQIPP+QSLKKLSISSSFLHGSTPLSFLSK SSS SP  SQTPNFLPSIR
Sbjct: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQI 165
           CRPISKMKTFLAIPVPAR SKKKA EGGEGGELGIPLESQQEQ+
Sbjct: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164

[Close]
BLAST of Pay0017516 vs. ExPASy TrEMBL
Match: A0A6J1JVM9 (30S ribosomal protein S17, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488732 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.8e-64
Identity = 140/162 (86.42%), Postives = 145/162 (89.51%), Query Frame = 0 

Query: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60
           MS TL+ SS LQIPPLQ LK LS+S+SFLHGS PLSFLSK   SPS  ASQTPNFLPSIR
Sbjct: 1   MSATLSHSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSK--PSPSLSASQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE 163
           CRPISKMKTFLAIPVPAR SK KAAE G  GEL IPLESQQ+
Sbjct: 121 CRPISKMKTFLAIPVPARNSKPKAAEAGV-GELEIPLESQQQ 159

[Close]
BLAST of Pay0017516 vs. ExPASy TrEMBL
Match: A0A6J1GQP3 (30S ribosomal protein S17, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111456201 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.1e-63
Identity = 137/160 (85.62%), Postives = 144/160 (90.00%), Query Frame = 0 

Query: 3   TTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIRAM 62
           + L+ SS LQIPPLQ LK LSIS+SFLHGS PLSFLSK   SPS  ASQTPNFLPSI+AM
Sbjct: 2   SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSK--PSPSLSASQTPNFLPSIKAM 61

Query: 63  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCR 122
           RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCR
Sbjct: 62  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCR 121

Query: 123 PISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE 163
           PISKMKTFLAIPVPAR SK KAAE G  GELGIPLESQ++
Sbjct: 122 PISKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQEQ 158

[Close]
BLAST of Pay0017516 vs. NCBI nr
Match: KAA0059310.1 (30S ribosomal protein S17 [Cucumis melo var. makuwa] >TYK04018.1 30S ribosomal protein S17 [Cucumis melo var. makuwa])

HSP 1 Score: 308.5 bits (789), Expect = 3.4e-80
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60
           MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQI 165
           CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQ+
Sbjct: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]
BLAST of Pay0017516 vs. NCBI nr
Match: XP_008462167.1 (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60
           MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSK SSSPSPLASQTPNFLPSIR
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSPSPLASQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQI 165
           CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQ+
Sbjct: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]
BLAST of Pay0017516 vs. NCBI nr
Match: XP_004141765.1 (30S ribosomal protein S17, chloroplastic [Cucumis sativus] >KGN45384.1 hypothetical protein Csa_015845 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 0 

Query: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60
           MS TLTSSSLLQIPP+QSLKKLSISSSFLHGSTPLSFLSK SSS SP  SQTPNFLPSIR
Sbjct: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQI 165
           CRPISKMKTFLAIPVPAR SKKKA EGGEGGELGIPLESQQEQ+
Sbjct: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164

[Close]
BLAST of Pay0017516 vs. NCBI nr
Match: XP_038898716.1 (30S ribosomal protein S17, chloroplastic [Benincasa hispida])

HSP 1 Score: 268.1 bits (684), Expect = 5.1e-68
Identity = 146/164 (89.02%), Postives = 151/164 (92.07%), Query Frame = 0 

Query: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60
           MS TLTSSSLLQIPPLQ LKKLSIS+SFLHGS+PL F SK    PSP A QTPNFLPSIR
Sbjct: 41  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSSPLPFHSK----PSPSAFQTPNFLPSIR 100

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK
Sbjct: 101 AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 160

Query: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQI 165
           CRPISKMKTFLAIPVP R+SKKKAAE G+ GELGIPLESQQEQ+
Sbjct: 161 CRPISKMKTFLAIPVPERSSKKKAAEDGD-GELGIPLESQQEQV 199

[Close]
BLAST of Pay0017516 vs. NCBI nr
Match: XP_023548191.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.1 bits (653), Expect = 2.0e-64
Identity = 140/162 (86.42%), Postives = 146/162 (90.12%), Query Frame = 0 

Query: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60
           MS TL+ SS LQIPPLQ LK LS+S+SFLHGS PLSFLSK   SPS  ASQTPNFLPSI+
Sbjct: 1   MSATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSK--PSPSLSASQTPNFLPSIK 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE 163
           CRPISKMKTFLAIPVPAR SK KAAE G  GELGIPLESQQ+
Sbjct: 121 CRPISKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQQQ 159

[Close]
BLAST of Pay0017516 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-45
Identity = 98/144 (68.06%), Postives = 116/144 (80.56%), Query Frame = 0 

Query: 18  SLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIRAMRSLQGRVVCATNDKT 77
           SL+ L +SS F HGSTPLS LSK +S P+    + P  +P IRAM+++QGRVVCAT+DKT
Sbjct: 9   SLQALKLSSPFAHGSTPLSSLSKPNSFPN---HRMPALVPVIRAMKTMQGRVVCATSDKT 68

Query: 78  VAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPA 137
           VAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPISK K+F+A+PV A
Sbjct: 69  VAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIA 128

Query: 138 RTSKKKAAEGGEGGELGIPLESQQ 162
           R ++K  AE G    LG+PLESQQ
Sbjct: 129 RAARK--AEAGGDELLGLPLESQQ 147

The following BLAST results are available for this feature:
BLAST of Pay0017516 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P161804.1e-4468.0630S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
P821375.7e-3860.4930S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 P... [more]
P170922.6e-3560.9430S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=... [more]
Q9TJN61.4e-2854.9330S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1[more]
Q9ZST11.2e-2754.9630S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=3994... [more]
BLAST of Pay0017516 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UW291.6e-8099.3930S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3CGC86.2e-8098.7830S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591... [more]
A0A0A0K9522.1e-7593.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446990 PE=3 SV=1[more]
A0A6J1JVM94.8e-6486.4230S ribosomal protein S17, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1GQP34.1e-6385.6330S ribosomal protein S17, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
BLAST of Pay0017516 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059310.13.4e-8099.3930S ribosomal protein S17 [Cucumis melo var. makuwa] >TYK04018.1 30S ribosomal p... [more]
XP_008462167.11.3e-7998.78PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo][more]
XP_004141765.14.3e-7593.9030S ribosomal protein S17, chloroplastic [Cucumis sativus] >KGN45384.1 hypotheti... [more]
XP_038898716.15.1e-6889.0230S ribosomal protein S17, chloroplastic [Benincasa hispida][more]
XP_023548191.12.0e-6486.4230S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Pay0017516 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G79850.12.9e-4568.06ribosomal protein S17 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 113..123
score: 52.55
coord: 81..104
score: 34.25
coord: 123..130
score: 52.75
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 67..130
e-value: 6.2E-24
score: 83.9
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 36..163
NoneNo IPR availableGENE3D2.40.50.140coord: 61..150
e-value: 4.0E-25
score: 89.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..164
NoneNo IPR availablePANTHERPTHR10744:SF730S RIBOSOMAL PROTEIN S17, CHLOROPLASTICcoord: 36..163
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 113..125
IPR01998430S ribosomal protein S17HAMAPMF_01345_BRibosomal_S17_Bcoord: 62..137
score: 17.915262
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 62..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0017516.1Pay0017516.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome