Pay0017478 (gene) Melon (Payzawat) v1

Overview


Name	Pay0017478
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Location	chr07: 17023042 .. 17027584 (-)
RNA-Seq Expression	Pay0017478
Synteny	Pay0017478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCAAAGGAGAGGTGCACGTAGGGGTGGTCGAGGAGGCCGAGGAAGGGGAGCAGGACGTGTTCAACCTGAGGTACAGCCTGTAGCCCAAGCCACTGACCCGGCTGCGCCAGTTACTCATGCGGACCTAGCTGCTATGGAGCAGAGGTTCAGGGATTTGATTATACAGATGCGGGAGCAGCAGCAGCAGCAACCTACCCCGCTAGCTCCTGCTCCAGCTCCGGCTCTAGTTTCAGTTGTGCCGGATCAGTTGTCGGCAGAGGCCAAGCACCTGAGGGATTTCAGGAAGTATAACCCCACGACATTCGATGGGTCTTTGGAGGACCCCACCAGGGATTAGCTGTGGTTATCGTCTTTGGAGACCATATTCTGGTACATGAAGTGCCCTGAGGATCAGAAAGTTCAGTGTGTTGTTTTTATGTTGACAGACAGAGGTACTGCATGGTGGAGACTACAGAGAGAATGCTAGGGGGTGACGTGGGTCAGATCACCTGGCAACAGTTCAAAGAGAGTTTCTATGCGAAACTCTTCTCTGCTAGTTTGAGAGATGCCAAGCGGCAGGAGTTCCTGAACTTAGAGCAGGGTGACATGACAGTGGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACTGAGGCGGCCAAAGCTGATAAGTTTGTTAGAGGCCTCCGACTAGACATCCAGGGTTTGGTTCGAGCTTTCCAACCCGCTACACATGCCGATGCACTGCGCCTGGCAGTGGATCTCAGTTTACAGGAGATGGCTAACTCGTCTAAGGTCACAGGTAGAGGTTCGACCTCGGGACAGAAAAGGAAGGCTGAGCAGCAGCCTAATCCAGTGCCACAGCGAAACTTCAGATCAGGTGGTGAGTTTCGCCGCTTCCAGCAGAAACCTTTTGAGGCAGGGGAAGCTGCCAGGGGGAAGCCGTTGTGTACCACTTGTGGGAAGCACCATCTGGGCCGTTGTTTATTTGAGACCAGGACTTGCTTTAAGTGTAGGCAAGAGGGGCATACAACTGACAGATTCCCGATGAGGCTTACGGGGAATGCGCAGAATCAGGGAGCAGGTGCTCCATACCAGGGTAAAGTCTTTGCTACTAACAAGACTGAGGCTGAGAGGGCAGGCACAATGGTGATAGGTACGCTTCCAGTATTGGGGCATTACGCCTTAGTTTTGTTTGATTCGGGTTCGTCACATTCTTTTATCTCTTCTGCATTTGTGTTGCATGCCCGCTGAGAGGTAGATCCTCTACACCATGTTCTATCAGTATCTACTTCTTCTGGGGAGTGTATGTTGTCGAAGGAAAAGGTGAAAGCATGCCAGATTGAGATAGCAGGCCATGTGATTGAAGTAACACTGTTAGTCCTGGACATGCTCGACTTTGATGTAATTCTGGGTATGGATTGGTTGGCCGCTAACCATGCCAGCATAGATTGTTCCCGTAAGGAGGTAGCGTTTAACCCTTCCTCGATGGTCAGTTTTAAATTTAAGGGAGAAGGGTCAAGGTCGTTACCTCAGGTAATCTCAGCCATGAGGGCCAGCAAACTGCTCAGTCAGGGTACTTGGAGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCAGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCTCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCGTACAGAATGGCCCCAGCATAGTTGAAAGAACTGAAAGTGCAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTGTGCATTGACTATAGGGAGTTAAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACTAAAGACAGCATTTTGTTCCAGATACGGACAATATGAGTTTATTGTGATGTATTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAATAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCATGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGCCAAGCATGAAGAGCATTTACATATGGTTCTACAAACACTACGGGATAATAAATTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTAAAGCAGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACCCGACCTTCCACAGTCAATGAGGTTCGTAGCTTTCTGGCTTGGCTGGTTATTATCGAGGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTAACCAGGAAAGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGAAAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGATTTGTGATTTATAGTGATGCTTTCAAGAAGGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCTTCAGTTGAAGAGTCATGAGCAGAATTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTGCATTGAAAATATGGAGGCATTACTTGCATGGTGAAAAGATACAGATCTTCACGGACCATAAGAGCTTGAAATATTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGCCAAATGTGGTAGCTGATGCTCTTAGTAGGAAGGTATCACATTCAGCAGCACTTATTACCCGACAGACCCCATTGCATCGAGATCTTGAGAGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTCACTATGCAGTTAGCCCAGTTGATGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTGACGATCCTTATTTGGATGAGAAGTGTGGCCTAGCAGAGGCAGGGCAAGCTGTTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTAAGAGGCGCCTCTGTGTGCCATCAGATAGTGCGGTTAAGACGGAATTATTATCTGAGGCTCACAGTTCCCCATTTTCCATGCACCCGGGTAGTACGAAGATGTATCAAGACCTTAAGCGGGTTTATTGGTGGCGTAATATGAAGAGGGAGGTGGCAAAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAACGGGTTTATTACAACCCTTGAGCGTACCGGAATGGAAGTGGGAAAACATGCCCATGGATTTCATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACCGTGATTTGGGTTGTGGTTGACAGGCTTACCAAATCAGCGCACTTTGTTCCGGGTAAATCCACCTACACCGCTAGTAAGTGGGCACAACTGTACATGTCTGAGATCGTAAGATTACATGGAGTGCCAATGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCCTTCCATTCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGATGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGTTGGGACTCCCAATTGCATTTGATGAAATTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGAACGGCAAATGTTGTAGATCCCCTGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCTTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAAATTAGATCACGTATGCTTACCGCACAGAGTAGGCAGAAGAGTTATGCGGATGTGAGACGGAGGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGAAGGTAGCACCTATGAAAGGTGTCTTACGATTTGAAAGGAGAGGAAAACTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCGTATCGCTTGGCGTTGCCACCATCACTCTCGGCAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATACTGAACAACCCGTTGAGGTGCTGGCTAGAGAGGTGAAAATGTTGAGGAATAGAGAAATTGCTTTGGTTAAAGTCTTATGGCCGAATCACAGGGTCGAAGAGGCTACCTGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGATCTGTTCGAGGAATAA

mRNA sequence

ATGCCGCAAAGGAGAGGTGCACGTAGGGGTGGTCGAGGAGGCCGAGGAAGGGGAGCAGGACGTGTTCAACCTGAGGTACAGCCTGTAGCCCAAGCCACTGACCCGGCTGCGCCAAGTAGGCAGAAGAGTTATGCGGATGTGAGACGGAGGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGAAGGTAGCACCTATGAAAGGTGTCTTACGATTTGAAAGGAGAGGAAAACTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCGTATCGCTTGGCGTTGCCACCATCACTCTCGGCAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATACTGAACAACCCGTTGAGGTGCTGGCTAGAGAGGTGAAAATGTTGAGGAATAGAGAAATTGCTTTGGTTAAAGTCTTATGGCCGAATCACAGGGTCGAAGAGGCTACCTGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGATCTGTTCGAGGAATAA

Coding sequence (CDS)

ATGCCGCAAAGGAGAGGTGCACGTAGGGGTGGTCGAGGAGGCCGAGGAAGGGGAGCAGGACGTGTTCAACCTGAGGTACAGCCTGTAGCCCAAGCCACTGACCCGGCTGCGCCAAGTAGGCAGAAGAGTTATGCGGATGTGAGACGGAGGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGAAGGTAGCACCTATGAAAGGTGTCTTACGATTTGAAAGGAGAGGAAAACTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCGTATCGCTTGGCGTTGCCACCATCACTCTCGGCAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATACTGAACAACCCGTTGAGGTGCTGGCTAGAGAGGTGAAAATGTTGAGGAATAGAGAAATTGCTTTGGTTAAAGTCTTATGGCCGAATCACAGGGTCGAAGAGGCTACCTGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGATCTGTTCGAGGAATAA

Protein sequence

MPQRRGARRGGRGGRGRGAGRVQPEVQPVAQATDPAAPSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKMLRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE

Homology

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BLAST of Pay0017478 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-06
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 40   RQKSYADVRRRDL-EFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAY 99
            + K Y D++ +++ EF  GD V +K     G L   +  KL+P F GPF +L++ GP  Y
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNY 1236

Query: 100  RLALPPSLSAV-HDVFHVSMLRKY 122
             L LP S+  +    FHVS L KY
Sbjct: 1237 ELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Pay0017478 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-06
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 40   RQKSYADVRRRDL-EFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAY 99
            + K Y D++ +++ EF  GD V +K     G L   +  KL+P F GPF +L++ GP  Y
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNY 1236

Query: 100  RLALPPSLSAV-HDVFHVSMLRKY 122
             L LP S+  +    FHVS L KY
Sbjct: 1237 ELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Pay0017478 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-06
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 40   RQKSYADVRRRDL-EFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAY 99
            + K Y D++ +++ EF  GD V +K     G L   +  KL+P F GPF +L++ GP  Y
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNY 1236

Query: 100  RLALPPSLSAV-HDVFHVSMLRKY 122
             L LP S+  +    FHVS L KY
Sbjct: 1237 ELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Pay0017478 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-06
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 40   RQKSYADVRRRDL-EFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAY 99
            + K Y D++ +++ EF  GD V +K     G L   +  KL+P F GPF +L++ GP  Y
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNY 1236

Query: 100  RLALPPSLSAV-HDVFHVSMLRKY 122
             L LP S+  +    FHVS L KY
Sbjct: 1237 ELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Pay0017478 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-06
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 40   RQKSYADVRRRDL-EFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAY 99
            + K Y D++ +++ EF  GD V +K     G L   +  KL+P F GPF +L++ GP  Y
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNY 1236

Query: 100  RLALPPSLSAV-HDVFHVSMLRKY 122
             L LP S+  +    FHVS L KY
Sbjct: 1237 ELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Pay0017478 vs. ExPASy TrEMBL
Match: A0A1S4DWP6 (uncharacterized protein LOC107990886 OS=Cucumis melo OX=3656 GN=LOC107990886 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.1e-86
Identity = 168/195 (86.15%), Postives = 178/195 (91.28%), Query Frame = 0


Query: 1   MPQRRGARRGGRGGRGRGAGRVQPEVQPVAQATDPAAPSRQKSYADVRRRDLEFDVGDKV 60
           MP RRG  RG +GGRGRG GR    VQPVAQATD AAPSRQKSYADVRRRDLEFDVGDKV
Sbjct: 1   MPSRRGVHRGDQGGRGRGTGR----VQPVAQATDHAAPSRQKSYADVRRRDLEFDVGDKV 60

Query: 61  FLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 120
           FLKVAPMKGVLRFERRGKLSPRFVGPF+ILE+IG VAYRL LPPSLS VHDVFHVSMLRK
Sbjct: 61  FLKVAPMKGVLRFERRGKLSPRFVGPFDILEKIGSVAYRLVLPPSLSVVHDVFHVSMLRK 120

Query: 121 YVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKMLRNREIALVKVLWPNHRVEEATWE 180
           YVP+PSHVVDY+PLEIDENLSYTEQPVEVLAREVKMLR +EI LVKVLW NH+VEEATWE
Sbjct: 121 YVPNPSHVVDYDPLEIDENLSYTEQPVEVLAREVKMLRIKEIPLVKVLWWNHKVEEATWE 180

Query: 181 REDDMRSRYPDLFEE 196
           REDDM++ YP+LFEE
Sbjct: 181 REDDMKAHYPELFEE 191

[Close]

BLAST of Pay0017478 vs. ExPASy TrEMBL
Match: A0A5A7TVQ8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001020 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 9.3e-83
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 37   APSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV 96
            A SRQKSYADVRRRDLEFDVGDKVFLKVAPMKGV+RFERRGKLSPRFVGPFEILERIGPV
Sbjct: 1259 AQSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVVRFERRGKLSPRFVGPFEILERIGPV 1318

Query: 97   AYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM 156
            AYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM
Sbjct: 1319 AYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM 1378

Query: 157  LRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE 196
            LRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE
Sbjct: 1379 LRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE 1417

[Close]

BLAST of Pay0017478 vs. ExPASy TrEMBL
Match: A0A5A7TVQ8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001020 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1   MPQRRGARRGGRGGRGRGAGRVQPEVQPVAQATDPAAPSRQKSYADVRRR 51
           MP RRGARRGGRGGRGRGAGRVQPEVQPVAQATDPAAP      A + +R
Sbjct: 80  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQATDPAAPVTHADLAAMEQR 129

HSP 2 Score: 306.2 bits (783), Expect = 9.7e-80
Identity = 153/160 (95.62%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 36  AAPSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP 95
           AA SRQKSYADVRR+DLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP
Sbjct: 236 AAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP 295

Query: 96  VAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK 155
           VAYRLALPPSLSAVHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEVLAREVK
Sbjct: 296 VAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK 355

Query: 156 MLRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE 196
           MLRNREI LVKVLW NHRVEEATWE+EDDMRSRYP+LFEE
Sbjct: 356 MLRNREIPLVKVLWRNHRVEEATWEQEDDMRSRYPELFEE 395

[Close]

BLAST of Pay0017478 vs. ExPASy TrEMBL
Match: A0A5D3BQF6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold904G00020 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.2e-79
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 37   APSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV 96
            A SRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV
Sbjct: 1069 AESRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV 1128

Query: 97   AYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM 156
            AYRLALP SLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM
Sbjct: 1129 AYRLALPQSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM 1188

Query: 157  LRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE 196
            LRNREIALVKVLW NHR+EEATWE+EDDMRSRYP+LFEE
Sbjct: 1189 LRNREIALVKVLWRNHRMEEATWEQEDDMRSRYPELFEE 1227

[Close]

BLAST of Pay0017478 vs. ExPASy TrEMBL
Match: A0A5A7TW43 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001000 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.2e-79
Identity = 151/159 (94.97%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 37   APSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV 96
            A SRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV
Sbjct: 1347 AQSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV 1406

Query: 97   AYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM 156
            AYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYT QP+EVLAREVKM
Sbjct: 1407 AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTNQPIEVLAREVKM 1466

Query: 157  LRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE 196
             RNREI LVKVLW NHRVEEATWEREDDMRSRYP+LFEE
Sbjct: 1467 FRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 1505

[Close]

BLAST of Pay0017478 vs. NCBI nr
Match: XP_016900398.1 (PREDICTED: uncharacterized protein LOC107990886 [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 6.4e-86
Identity = 168/195 (86.15%), Postives = 178/195 (91.28%), Query Frame = 0


Query: 1   MPQRRGARRGGRGGRGRGAGRVQPEVQPVAQATDPAAPSRQKSYADVRRRDLEFDVGDKV 60
           MP RRG  RG +GGRGRG GR    VQPVAQATD AAPSRQKSYADVRRRDLEFDVGDKV
Sbjct: 1   MPSRRGVHRGDQGGRGRGTGR----VQPVAQATDHAAPSRQKSYADVRRRDLEFDVGDKV 60

Query: 61  FLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 120
           FLKVAPMKGVLRFERRGKLSPRFVGPF+ILE+IG VAYRL LPPSLS VHDVFHVSMLRK
Sbjct: 61  FLKVAPMKGVLRFERRGKLSPRFVGPFDILEKIGSVAYRLVLPPSLSVVHDVFHVSMLRK 120

Query: 121 YVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKMLRNREIALVKVLWPNHRVEEATWE 180
           YVP+PSHVVDY+PLEIDENLSYTEQPVEVLAREVKMLR +EI LVKVLW NH+VEEATWE
Sbjct: 121 YVPNPSHVVDYDPLEIDENLSYTEQPVEVLAREVKMLRIKEIPLVKVLWWNHKVEEATWE 180

Query: 181 REDDMRSRYPDLFEE 196
           REDDM++ YP+LFEE
Sbjct: 181 REDDMKAHYPELFEE 191

[Close]

BLAST of Pay0017478 vs. NCBI nr
Match: KAA0045329.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 316.2 bits (809), Expect = 1.9e-82
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 37   APSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV 96
            A SRQKSYADVRRRDLEFDVGDKVFLKVAPMKGV+RFERRGKLSPRFVGPFEILERIGPV
Sbjct: 1259 AQSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVVRFERRGKLSPRFVGPFEILERIGPV 1318

Query: 97   AYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM 156
            AYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM
Sbjct: 1319 AYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM 1378

Query: 157  LRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE 196
            LRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE
Sbjct: 1379 LRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE 1417

[Close]

BLAST of Pay0017478 vs. NCBI nr
Match: KAA0045329.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-09
Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1   MPQRRGARRGGRGGRGRGAGRVQPEVQPVAQATDPAAPSRQKSYADVRRR 51
           MP RRGARRGGRGGRGRGAGRVQPEVQPVAQATDPAAP      A + +R
Sbjct: 80  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQATDPAAPVTHADLAAMEQR 129

HSP 2 Score: 306.2 bits (783), Expect = 2.0e-79
Identity = 153/160 (95.62%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 36  AAPSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP 95
           AA SRQKSYADVRR+DLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP
Sbjct: 236 AAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP 295

Query: 96  VAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK 155
           VAYRLALPPSLSAVHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEVLAREVK
Sbjct: 296 VAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK 355

Query: 156 MLRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE 196
           MLRNREI LVKVLW NHRVEEATWE+EDDMRSRYP+LFEE
Sbjct: 356 MLRNREIPLVKVLWRNHRVEEATWEQEDDMRSRYPELFEE 395

[Close]

BLAST of Pay0017478 vs. NCBI nr
Match: KAA0045595.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 305.1 bits (780), Expect = 4.4e-79
Identity = 151/159 (94.97%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 37   APSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV 96
            A SRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV
Sbjct: 1347 AQSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV 1406

Query: 97   AYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM 156
            AYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYT QP+EVLAREVKM
Sbjct: 1407 AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTNQPIEVLAREVKM 1466

Query: 157  LRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE 196
             RNREI LVKVLW NHRVEEATWEREDDMRSRYP+LFEE
Sbjct: 1467 FRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 1505

[Close]

BLAST of Pay0017478 vs. NCBI nr
Match: KAA0045595.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-07
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1   MPQRRGARRGGRGGRGRGAGRVQPEVQPVAQATDPAAPSRQKSYADVRRR 51
           MP RRGARRGGRGGRGRGAGRVQ EVQPVAQAT PAAP      A + +R
Sbjct: 146 MPPRRGARRGGRGGRGRGAGRVQSEVQPVAQATGPAAPVTHADLATMEQR 195

HSP 2 Score: 305.1 bits (780), Expect = 4.4e-79
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 37   APSRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV 96
            A SRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV
Sbjct: 1069 AESRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPV 1128

Query: 97   AYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM 156
            AYRLALP SLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM
Sbjct: 1129 AYRLALPQSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKM 1188

Query: 157  LRNREIALVKVLWPNHRVEEATWEREDDMRSRYPDLFEE 196
            LRNREIALVKVLW NHR+EEATWE+EDDMRSRYP+LFEE
Sbjct: 1189 LRNREIALVKVLWRNHRMEEATWEQEDDMRSRYPELFEE 1227

The following BLAST results are available for this feature:

BLAST of Pay0017478 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	3.1e-06	39.29	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	3.1e-06	39.29	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.1e-06	39.29	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	3.1e-06	39.29	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	3.1e-06	39.29	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Pay0017478 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DWP6	3.1e-86	86.15	uncharacterized protein LOC107990886 OS=Cucumis melo OX=3656 GN=LOC107990886 PE=...	[more]
A0A5A7TVQ8	9.3e-83	98.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5A7TVQ8	1.8e-09	78.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5D3BQF6	2.2e-79	95.60	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TW43	2.2e-79	94.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]

Pages

BLAST of Pay0017478 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900398.1	6.4e-86	86.15	PREDICTED: uncharacterized protein LOC107990886 [Cucumis melo]	[more]
KAA0045329.1	1.9e-82	98.74	pol protein [Cucumis melo var. makuwa]	[more]
KAA0045329.1	3.7e-09	78.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0045595.1	4.4e-79	94.97	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0045595.1	1.6e-07	74.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0017478 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 36..189
None	No IPR available	PANTHER	PTHR46148:SF21	DOMAIN PROTEIN, PUTATIVE-RELATED	coord: 36..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0017478.1	Pay0017478.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding