Pay0017458 (gene) Melon (Payzawat) v1

Overview


Name	Pay0017458
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	SWIB domain-containing protein
Location	chr01: 749984 .. 752025 (+)
RNA-Seq Expression	Pay0017458
Synteny	Pay0017458

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTACCGCTTCACCTTCTTCGCTTTATCCATTTTTTGAGAACAACCTTTCGTCACTCACTTACTTCCGGCCATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCTCCTCCTCCTCCCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTCGCTTCCAACCAGGCCACTGCCCCCCGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAGATTTCACCGGAGTTGCAAGCACTTGTCGGCGCTCCTGAGATTTCCCGCACCCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGGTAGAATCTCTCTTCTTCTTTCGTTTTCCGTTTTTCTTTTTCTTTCCGTGCTGTTTTCATTACTTTTCTGTGGTGTGTTTTTTTCTTCAGTGGAGTTGAAAGTTTATGGGGCTTCCATAGTTTTCCAAACCCTCATTTCTGAACAAGACATTGGATGTTGGTCTTTAGAACTTTTCTTGCTATGTTCTTTCTGGAATGCGGTTTAATGGTTATTAGATGATGTTTCTTCGTCTCTTAATGCTTTATTTTGAAGATTGGTTCGATGTGGTCTTTTTTTATTAGTGAAGTTTGTATAAGAAAATGGGAGATGTTTGCTCTGATTTGTTGGGTTACGAGGAGGTTGGGAGATATATTGGCATGGTTTGAATATTTCTTGTTCTGAACAATGGTTTTGGATTGTTGGTCTTTAAAATTTTCTTGCTGTGTTGTTGTTAGAATGTGCTTTGATGATCATTGGATGGATGTTTTTAACAACTCTTAATGCATTATTTTGAAGAGGCTTTAGATGTGGCATGTGGATAGTGATGCTTTTAGATTAATTGACATCCTTGTTATTGGGTTTGAGGCTTTTAAGGTTTTTGAAGAGCTTTTTCTGTTTTGGGTTTCCAAGTTAACTCTTTTCTGATTTGTACATTGGTTTTCAAACACTTGGAACAGTTCTAGTAAAACATATGCTTGTTTCTCGGTTTTCAATTGTTTCATAGATTGAATCCATCCATTCAAGTGCTATTGTTAAAAACATAAACACCTTCTATTTGGATAAAGATATACATCTTCTGAAATTTAAATTGGCAGAAGGTTCTAATTACAATATTTCTTTCTGTACTCACCACATGCTCTCATTGCAAAGTTTTTACACTAATTCCTATACGAGCTTTATCATTCTCTTATTTGCTCTCTCCGTAAACACTCTCCCTCTTTCTTATGCAACTCTGTTTGTCTAAAAACTCGCTCACCATTTTTTGTTCCCTAGCACATTTCTATCCTTAATTGAGTTCTGCATATATAATTGACCTTTAGCTTGTCTTGTATGTTGGTGATATCTACTTGATTTCCATTAGTTCTCTTACATTACTGCATTAAACCTGTCCTTTCTTTGGTTAAATACCGCCTGGTGTTTCATAAAAGAACATAAATTGGTTATGATAGTTGATGTCTTACAAATCAGCGATTTGAAGCACAGAAACTCCGGGTCATGTCAATTTGTTTTTCTTTTAAATGATATTCTTTATTCTTTTAGAAACCAAGCGACAAGAAAGTCATAGTTTGCGATGAGAAACTGAAGAACATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATCGCAGGTTTAATAAGTCCACACTTTCTATAATTATTCGAAGTATGGAAGATAGACATAATGGACCTTCTTTTGAGTCCATGAAGATGAACTTTTTTTTTCCTTTTGTTGTGGGAGCCTCTCAACTCAAGTATTGCTCACTGAATCCTGTAGTTCAGAGCCCACATCTTATGATTAGTAGTTAAATAGAGAGAAAGAAAGCTTTTGTAAGAACTATGATTGGTGGTTTTATGTAGAGATTGTTATATGGAAATCTCTTTTAATTATGAGTTTTTGGGTATAATGTTTCACTTTTGTATTATTCTACATGCTTGCTTTTTTTGTGCTTCC

mRNA sequence

CTCTTACCGCTTCACCTTCTTCGCTTTATCCATTTTTTGAGAACAACCTTTCGTCACTCACTTACTTCCGGCCATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCTCCTCCTCCTCCCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTCGCTTCCAACCAGGCCACTGCCCCCCGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAGATTTCACCGGAGTTGCAAGCACTTGTCGGCGCTCCTGAGATTTCCCGCACCCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGAAACCAAGCGACAAGAAAGTCATAGTTTGCGATGAGAAACTGAAGAACATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATCGCAGGTTTAATAAGTCCACACTTTCTATAATTATTCGAAGTATGGAAGATAGACATAATGGACCTTCTTTTGAGTCCATGAAGATGAACTTTTTTTTTCCTTTTGTTGTGGGAGCCTCTCAACTCAAGTATTGCTCACTGAATCCTGTAGTTCAGAGCCCACATCTTATGATTAGTAGTTAAATAGAGAGAAAGAAAGCTTTTGTAAGAACTATGATTGGTGGTTTTATGTAGAGATTGTTATATGGAAATCTCTTTTAATTATGAGTTTTTGGGTATAATGTTTCACTTTTGTATTATTCTACATGCTTGCTTTTTTTGTGCTTCC

Coding sequence (CDS)

ATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCTCCTCCTCCTCCCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTCGCTTCCAACCAGGCCACTGCCCCCCGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAGATTTCACCGGAGTTGCAAGCACTTGTCGGCGCTCCTGAGATTTCCCGCACCCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGAAACCAAGCGACAAGAAAGTCATAGTTTGCGATGAGAAACTGAAGAACATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATCGCAGGTTTAATAAGTCCACACTTTCTATAA

Protein sequence

MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAPRREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLKNIFGGKDEVGFLEIAGLISPHFL

Homology

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BLAST of Pay0017458 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-10
Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 67  ITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLKNIF 124
           + KP K+SP+L   +G  ++SR Q +K +W YIK ++LQ P+DK+ I+CD+KLK++F
Sbjct: 117 LNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173

[Close]

BLAST of Pay0017458 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-10
Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 73  ISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLKNIFGGK 127
           +S  LQ  +G+ E+ RTQ +K+IW YIKE++LQ P D++ I+CDEK++ IFG K
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK 179

[Close]

BLAST of Pay0017458 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 68  TKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLKNIFG 125
           T+   +S  L +L+G  E++RT+ ++ +WAYIK +NLQ P++KK I+CDEKL+ I G
Sbjct: 121 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG 177

[Close]

BLAST of Pay0017458 vs. ExPASy TrEMBL
Match: A0A1S3C0N2 (SWI/SNF complex component SNF12 homolog OS=Cucumis melo OX=3656 GN=LOC103495293 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60
           MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60

Query: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120
           RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK
Sbjct: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 144
           NIFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 143

[Close]

BLAST of Pay0017458 vs. ExPASy TrEMBL
Match: A0A0A0K2G6 (Brg-1 associated factor OS=Cucumis sativus OX=3659 GN=Csa_7G071540 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.9e-64
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60
           MAFLSTFIAVKPSLLVVKPSPTT   SSS+LKHLNQLPLPDLRFPRTVTFA AS QATAP
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTT---SSSNLKHLNQLPLPDLRFPRTVTFALASKQATAP 60

Query: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120
            REPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPS+KKVI CDEKLK
Sbjct: 61  SREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 144
            IFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 KIFGGKDEVGFLEIAGLISPHFL 140

[Close]

BLAST of Pay0017458 vs. ExPASy TrEMBL
Match: A0A6J1GL33 (uncharacterized protein LOC111455244 OS=Cucurbita moschata OX=3662 GN=LOC111455244 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.7e-49
Identity = 105/143 (73.43%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60
           MAF+STF++ +PSLLV +     +S+  SS+KH  QLPLP+LRF RT+TFA ASNQ TA 
Sbjct: 1   MAFVSTFVSGEPSLLVAR-----ASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTAS 60

Query: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120
            R+PRGI KPR+ISPE+QALVGAPEISRT+ALKVIW +IKE+NLQKPSDKK+I+CDEKLK
Sbjct: 61  SRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 144
            IFGGKDEVGFLEIAGLIS HFL
Sbjct: 121 KIFGGKDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Pay0017458 vs. ExPASy TrEMBL
Match: A0A6J1IAA1 (uncharacterized protein LOC111471082 OS=Cucurbita maxima OX=3661 GN=LOC111471082 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 5.0e-49
Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60
           MAF+STF++ + SLL+ +     +S+  SS+KH  QLPLP+LRF RT+TFA ASNQATA 
Sbjct: 1   MAFVSTFVSGELSLLLAR-----ASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATAS 60

Query: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120
            R+PRGI KPR+ISPE+QALVGAPEISRTQALKVIWA+IKE+NLQKPSDKK+I+CDEKLK
Sbjct: 61  SRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 144
            IFGGKDEVGFLEIAGLIS HFL
Sbjct: 121 KIFGGKDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Pay0017458 vs. ExPASy TrEMBL
Match: A0A6J1JNZ3 (uncharacterized protein LOC111486197 OS=Cucurbita maxima OX=3661 GN=LOC111486197 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.5e-49
Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60
           MAF+STFI+ + SLL V+     +S++SSS+KH  Q P  +L F RTVTFA  SNQATA 
Sbjct: 1   MAFVSTFISGELSLLTVR-----ASATSSSVKHPYQFPPSNLHFARTVTFASTSNQATAS 60

Query: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120
           +R+PRGI KP++ISPE+QALVG PEISRTQALKVIWA+IKE+NLQKPSDKKVI+CDEKLK
Sbjct: 61  QRQPRGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 144
           NIFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 138

[Close]

BLAST of Pay0017458 vs. NCBI nr
Match: XP_008455019.1 (PREDICTED: SWI/SNF complex component SNF12 homolog [Cucumis melo])

HSP 1 Score: 278.5 bits (711), Expect = 3.3e-71
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60
           MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60

Query: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120
           RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK
Sbjct: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 144
           NIFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 143

[Close]

BLAST of Pay0017458 vs. NCBI nr
Match: XP_004136946.1 (uncharacterized protein LOC101217337 [Cucumis sativus] >KGN43865.1 hypothetical protein Csa_017148 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 3.9e-64
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60
           MAFLSTFIAVKPSLLVVKPSPTT   SSS+LKHLNQLPLPDLRFPRTVTFA AS QATAP
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTT---SSSNLKHLNQLPLPDLRFPRTVTFALASKQATAP 60

Query: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120
            REPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPS+KKVI CDEKLK
Sbjct: 61  SREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 144
            IFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 KIFGGKDEVGFLEIAGLISPHFL 140

[Close]

BLAST of Pay0017458 vs. NCBI nr
Match: XP_038888173.1 (uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida])

HSP 1 Score: 218.4 bits (555), Expect = 4.0e-53
Identity = 114/143 (79.72%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60
           MAFLSTFI+ +PSLLVVK     +S++++S+K   QLPLP+LRF RTVTFA ASNQATA 
Sbjct: 1   MAFLSTFISGEPSLLVVK-----ASATATSVKQPYQLPLPNLRFARTVTFASASNQATAS 60

Query: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120
            R+PRGI KPR+ISPE+QALVGAPEISRTQALKVIWA+IKE+NLQKPSDKKVI+CDEKLK
Sbjct: 61  HRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 144
           NIFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 138

[Close]

BLAST of Pay0017458 vs. NCBI nr
Match: XP_022952608.1 (uncharacterized protein LOC111455244 [Cucurbita moschata])

HSP 1 Score: 205.3 bits (521), Expect = 3.5e-49
Identity = 105/143 (73.43%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60
           MAF+STF++ +PSLLV +     +S+  SS+KH  QLPLP+LRF RT+TFA ASNQ TA 
Sbjct: 1   MAFVSTFVSGEPSLLVAR-----ASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTAS 60

Query: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120
            R+PRGI KPR+ISPE+QALVGAPEISRT+ALKVIW +IKE+NLQKPSDKK+I+CDEKLK
Sbjct: 61  SRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 144
            IFGGKDEVGFLEIAGLIS HFL
Sbjct: 121 KIFGGKDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Pay0017458 vs. NCBI nr
Match: XP_023553864.1 (uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 3.5e-49
Identity = 105/143 (73.43%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60
           MAF+STF++ +PSLLV +     +S+  SS+KH  QLPLP+LRF RT+TFA ASNQ TA 
Sbjct: 1   MAFVSTFVSGEPSLLVAR-----ASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTAS 60

Query: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120
            R+PRGI KPR+ISPE+QALVGAPEISRTQALKVIW +IKE+NLQKP+DKK+I+CDEKLK
Sbjct: 61  SRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWTHIKEHNLQKPNDKKIIICDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 144
            IFGGKDEVGFLEIAGLIS HFL
Sbjct: 121 KIFGGKDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Pay0017458 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 131.3 bits (329), Expect = 6.0e-31
Identity = 76/140 (54.29%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 5   STFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP-RRE 64
           STF+ +K +      +P+T  SS     H    P   LR  R VT A  S++ TA  +R 
Sbjct: 9   STFLCIKTTSF---RNPSTPLSSLRFASH----PAAKLRLVRAVTSATESSEPTATNKRV 68

Query: 65  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLKNIF 124
           PRGI KPR +SPE+Q +V  PEI+RTQALK IWAYIKE++LQ P +K+ I+CDEKLK IF
Sbjct: 69  PRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIF 128

Query: 125 GGKDEVGFLEIAGLISPHFL 144
            G+D VGFLEIA LI PHFL
Sbjct: 129 EGRDRVGFLEIAKLIGPHFL 141

[Close]

BLAST of Pay0017458 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 8.7e-30
Identity = 73/134 (54.48%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 13  SLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQ---ATAPRREPRGITK 72
           + L V  +P  SS  S S   L+     +LR  R VT A A++     T   REPRGI K
Sbjct: 11  TFLCVDTAPLRSSMLSPSSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTKTREPRGIMK 70

Query: 73  PRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLKNIFGGKDEV 132
           PR +S  +Q +VG PEI RTQALK IWAYIKE++LQ P +K+ I+CDEKLK IF GK+ V
Sbjct: 71  PRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERV 130

Query: 133 GFLEIAGLISPHFL 144
           GFLEIA LI PHFL
Sbjct: 131 GFLEIAKLIGPHFL 144

[Close]

BLAST of Pay0017458 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 61  RREPR--GITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEK 120
           ++ PR  GI K   +SP L   +G  E SRT A+K IW YIK ++LQ P+DK+ I CDE 
Sbjct: 56  KKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDET 115

Query: 121 LKNIFGGKDEVGFLEIAGLISPHFL 144
           LK IF GKD+VGFLEI+ L+SPHF+
Sbjct: 116 LKLIFEGKDKVGFLEISKLLSPHFV 140

[Close]

BLAST of Pay0017458 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-19
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 46  RTVTFAFASNQATAPRREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQ 105
           RT+    A+ +A     E +GI K R +S +L +  G  E++R  ALK +W Y+K +NLQ
Sbjct: 12  RTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQ 71

Query: 106 KPSDKKVIVCDEKLKNIFGGKDEVGFLEIAGLISPHF 143
            P++KK I CD+KLK IF GKD+VG  EI  L+SPHF
Sbjct: 72  NPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

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BLAST of Pay0017458 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-19
Identity = 47/90 (52.22%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 53  ASNQATAPRREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKV 112
           AS+      R+  GI K   +S  L   +G  E+SRT A+K IW YIK NNLQ P +K+ 
Sbjct: 16  ASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKRE 75

Query: 113 IVCDEKLKNIFGGKDEVGFLEIAGLISPHF 143
           I+CDE+LK IF GKD VGFLEI+ L+S HF
Sbjct: 76  ILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105

The following BLAST results are available for this feature:

BLAST of Pay0017458 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	1.5e-10	47.37	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q05024	5.7e-10	51.85	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	1.8e-08	47.37	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of Pay0017458 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0N2	1.6e-71	100.00	SWI/SNF complex component SNF12 homolog OS=Cucumis melo OX=3656 GN=LOC103495293 ...	[more]
A0A0A0K2G6	1.9e-64	93.01	Brg-1 associated factor OS=Cucumis sativus OX=3659 GN=Csa_7G071540 PE=4 SV=1	[more]
A0A6J1GL33	1.7e-49	73.43	uncharacterized protein LOC111455244 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1IAA1	5.0e-49	74.13	uncharacterized protein LOC111471082 OS=Cucurbita maxima OX=3661 GN=LOC111471082...	[more]
A0A6J1JNZ3	8.5e-49	74.13	uncharacterized protein LOC111486197 OS=Cucurbita maxima OX=3661 GN=LOC111486197...	[more]

BLAST of Pay0017458 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455019.1	3.3e-71	100.00	PREDICTED: SWI/SNF complex component SNF12 homolog [Cucumis melo]	[more]
XP_004136946.1	3.9e-64	93.01	uncharacterized protein LOC101217337 [Cucumis sativus] >KGN43865.1 hypothetical ...	[more]
XP_038888173.1	4.0e-53	79.72	uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida]	[more]
XP_022952608.1	3.5e-49	73.43	uncharacterized protein LOC111455244 [Cucurbita moschata]	[more]
XP_023553864.1	3.5e-49	73.43	uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Pay0017458 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14880.1	6.0e-31	54.29	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	8.7e-30	54.48	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	1.4e-19	55.29	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	2.4e-19	47.42	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	3.1e-19	52.22	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 67..143 e-value: 4.4E-30 score: 115.9
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 62..143 e-value: 2.6E-27 score: 96.5
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 63..142
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 69..142 e-value: 2.7E-29 score: 100.8
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 66..143 score: 22.475433
None	No IPR available	PANTHER	PTHR13844:SF8	EXPRESSED PROTEIN-RELATED	coord: 17..143
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 17..143
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 71..142 e-value: 8.56383E-36 score: 116.489

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0017458.1	Pay0017458.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus