Pay0017401 (gene) Melon (Payzawat) v1

Overview


Name	Pay0017401
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr07: 16167674 .. 16168021 (+)
RNA-Seq Expression	Pay0017401
Synteny	Pay0017401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTACAATATGTATGAAATGCAGAAGAGTTTGAGTAAGCTGCATGGAATGCCGAAAACTGCAAAGTTGAACATCAAATCTAATTATGAGATTTTGATGTTGCAAAAAGGGAAGAATCCCAAGAATAGGGGACAAGATCAAGGAAAGGGTAATGAGAAAGTTGTTGTCAAGACATCAAAAGTTGATACTTTTATTGCACCTAAGCCAAGATTCAAACCTAAAAAGCCTAAGCCATCCAAGGAAGGAGAATGTTATCACTGTAAGAAAATTGGGCATTGGGAGAGGAACTATCCTCTTTATCTGGAAGAACTGAAGAACAACAAAGGAAGTGTTCCTTTGACTTAA

mRNA sequence

ATGAACTACAATATGTATGAAATGCAGAAGAGTTTGAGTAAGCTGCATGGAATGCCGAAAACTGCAAAGTTGAACATCAAATCTAATTATGAGATTTTGATGTTGCAAAAAGGGAAGAATCCCAAGAATAGGGGACAAGATCAAGGAAAGGGTAATGAGAAAGTTGTTGTCAAGACATCAAAAGTTGATACTTTTATTGCACCTAAGCCAAGATTCAAACCTAAAAAGCCTAAGCCATCCAAGGAAGGAGAATGTTATCACTGTAAGAAAATTGGGCATTGGGAGAGGAACTATCCTCTTTATCTGGAAGAACTGAAGAACAACAAAGGAAGTGTTCCTTTGACTTAA

Coding sequence (CDS)

ATGAACTACAATATGTATGAAATGCAGAAGAGTTTGAGTAAGCTGCATGGAATGCCGAAAACTGCAAAGTTGAACATCAAATCTAATTATGAGATTTTGATGTTGCAAAAAGGGAAGAATCCCAAGAATAGGGGACAAGATCAAGGAAAGGGTAATGAGAAAGTTGTTGTCAAGACATCAAAAGTTGATACTTTTATTGCACCTAAGCCAAGATTCAAACCTAAAAAGCCTAAGCCATCCAAGGAAGGAGAATGTTATCACTGTAAGAAAATTGGGCATTGGGAGAGGAACTATCCTCTTTATCTGGAAGAACTGAAGAACAACAAAGGAAGTGTTCCTTTGACTTAA

Protein sequence

MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT

Homology

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BLAST of Pay0017401 vs. ExPASy TrEMBL
Match: A0A5D3CZL7 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00780 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 6.8e-57
Identity = 111/115 (96.52%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60
           M+YNMYEMQKSLSKLHGMPK AKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS
Sbjct: 1   MSYNMYEMQKSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60

Query: 61  KVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 116
           KVDTFIAPKPR KPKKPKPSKE ECYHCKKIGHWERNYPLYLEELKNNKGSVPLT
Sbjct: 61  KVDTFIAPKPRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 115

[Close]

BLAST of Pay0017401 vs. ExPASy TrEMBL
Match: A0A1S4E1A7 (uncharacterized protein LOC107991397 OS=Cucumis melo OX=3656 GN=LOC107991397 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 6.8e-57
Identity = 111/115 (96.52%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60
           M+YNMYEMQKSLSKLHGMPK AKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS
Sbjct: 1   MSYNMYEMQKSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60

Query: 61  KVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 116
           KVDTFIAPKPR KPKKPKPSKE ECYHCKKIGHWERNYPLYLEELKNNKGSVPLT
Sbjct: 61  KVDTFIAPKPRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 115

[Close]

BLAST of Pay0017401 vs. ExPASy TrEMBL
Match: A0A5A7UN47 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001440 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.1e-38
Identity = 80/115 (69.57%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60
           M+YNM+E++KSL++LHGM KTAKLNIK + E+LM+QKGKNPK R +DQGKG EKVVVK S
Sbjct: 53  MSYNMHEIEKSLTQLHGMLKTAKLNIKFSSEVLMVQKGKNPKKRERDQGKGKEKVVVKAS 112

Query: 61  KVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 116
           KVD    P+ R KPK+PKP KEGECY CKKI HW R  P+YLEELK NKGS+P T
Sbjct: 113 KVDALAVPRSRPKPKEPKPPKEGECYFCKKIEHWNRKCPIYLEELKKNKGSIPST 167

[Close]

BLAST of Pay0017401 vs. ExPASy TrEMBL
Match: A0A5A7VL77 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00490 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.6e-36
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60
           ++YNM+ M+KSL++LHGM KT KLNIKS+ ++LM+QKGKNPK +  DQGKG  KV VKTS
Sbjct: 56  ISYNMHGMKKSLTELHGMLKTIKLNIKSSSKVLMMQKGKNPKKKEHDQGKGKGKVAVKTS 115

Query: 61  KVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 116
           KVD F AP+PR K K+PKP KEGE YHCKKIG+W+RN PLYL+ LK NK SVP T
Sbjct: 116 KVDAFGAPRPRTKSKEPKPPKEGEYYHCKKIGNWKRNCPLYLKYLKKNKESVPFT 170

[Close]

BLAST of Pay0017401 vs. ExPASy TrEMBL
Match: A0A5D3C6L2 (Putative retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00230 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.8e-32
Identity = 70/95 (73.68%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 21  TAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPS 80
           TAKLNIKS+ E+LM+QKGKNPK R +DQGKG EKVVVK SKVD    P+PR KPK+PKP 
Sbjct: 51  TAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPP 110

Query: 81  KEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 116
           KEGECY CKKI HW+R  PLYLEELK NKGS+P T
Sbjct: 111 KEGECYFCKKIEHWKRKCPLYLEELKKNKGSIPST 145

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BLAST of Pay0017401 vs. NCBI nr
Match: XP_016901775.1 (PREDICTED: uncharacterized protein LOC107991397 [Cucumis melo] >KAA0053417.1 putative polyprotein [Cucumis melo var. makuwa] >TYK15896.1 putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 111/115 (96.52%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60
           M+YNMYEMQKSLSKLHGMPK AKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS
Sbjct: 1   MSYNMYEMQKSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60

Query: 61  KVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 116
           KVDTFIAPKPR KPKKPKPSKE ECYHCKKIGHWERNYPLYLEELKNNKGSVPLT
Sbjct: 61  KVDTFIAPKPRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 115

[Close]

BLAST of Pay0017401 vs. NCBI nr
Match: KAA0056624.1 (hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 8.5e-38
Identity = 80/115 (69.57%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60
           M+YNM+E++KSL++LHGM KTAKLNIK + E+LM+QKGKNPK R +DQGKG EKVVVK S
Sbjct: 53  MSYNMHEIEKSLTQLHGMLKTAKLNIKFSSEVLMVQKGKNPKKRERDQGKGKEKVVVKAS 112

Query: 61  KVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 116
           KVD    P+ R KPK+PKP KEGECY CKKI HW R  P+YLEELK NKGS+P T
Sbjct: 113 KVDALAVPRSRPKPKEPKPPKEGECYFCKKIEHWNRKCPIYLEELKKNKGSIPST 167

[Close]

BLAST of Pay0017401 vs. NCBI nr
Match: KAA0066495.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK06146.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60
           ++YNM+ M+KSL++LHGM KT KLNIKS+ ++LM+QKGKNPK +  DQGKG  KV VKTS
Sbjct: 56  ISYNMHGMKKSLTELHGMLKTIKLNIKSSSKVLMMQKGKNPKKKEHDQGKGKGKVAVKTS 115

Query: 61  KVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 116
           KVD F AP+PR K K+PKP KEGE YHCKKIG+W+RN PLYL+ LK NK SVP T
Sbjct: 116 KVDAFGAPRPRTKSKEPKPPKEGEYYHCKKIGNWKRNCPLYLKYLKKNKESVPFT 170

[Close]

BLAST of Pay0017401 vs. NCBI nr
Match: TYK07553.1 (putative retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 70/95 (73.68%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 21  TAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRFKPKKPKPS 80
           TAKLNIKS+ E+LM+QKGKNPK R +DQGKG EKVVVK SKVD    P+PR KPK+PKP 
Sbjct: 51  TAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPP 110

Query: 81  KEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 116
           KEGECY CKKI HW+R  PLYLEELK NKGS+P T
Sbjct: 111 KEGECYFCKKIEHWKRKCPLYLEELKKNKGSIPST 145

[Close]

BLAST of Pay0017401 vs. NCBI nr
Match: KAA0047785.1 (putative retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.2e-24
Identity = 65/115 (56.52%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MNYNMYEMQKSLSKLHGMPKTAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTS 60
           M+YNM++ +KSL+KLHGM KTA+LNIKS++E LM++KGKNPK R Q QG           
Sbjct: 1   MSYNMHKKEKSLNKLHGMLKTAELNIKSSFEDLMIRKGKNPKKREQYQG----------- 60

Query: 61  KVDTFIAPKPRFKPKKPKPSKEGECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 116
                          KPK  KEGE YHCK+IGHW+RN PLYLEELK NKGSVP T
Sbjct: 61  --------------TKPKSPKEGEYYHCKEIGHWKRNCPLYLEELKKNKGSVPST 90

The following BLAST results are available for this feature:

BLAST of Pay0017401 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0017401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZL7	6.8e-57	96.52	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637...	[more]
A0A1S4E1A7	6.8e-57	96.52	uncharacterized protein LOC107991397 OS=Cucumis melo OX=3656 GN=LOC107991397 PE=...	[more]
A0A5A7UN47	4.1e-38	69.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VL77	6.6e-36	67.83	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C6L2	5.8e-32	73.68	Putative retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Pay0017401 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901775.1	1.4e-56	96.52	PREDICTED: uncharacterized protein LOC107991397 [Cucumis melo] >KAA0053417.1 put...	[more]
KAA0056624.1	8.5e-38	69.57	hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]	[more]
KAA0066495.1	1.4e-35	67.83	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK07553.1	1.2e-31	73.68	putative retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047785.1	3.2e-24	56.52	putative retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0017401 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 72..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0017401.1	Pay0017401.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding