Pay0017270 (gene) Melon (Payzawat) v1

Overview
NamePay0017270
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionCopia-like polyprotein
Locationchr06: 23648048 .. 23649500 (-)
RNA-Seq ExpressionPay0017270
SyntenyPay0017270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTAAATGGGTATTTGTGCGTAAACGAAATAAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTTTCTCAAAGACCAGACATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGACTATATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTGTATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTAAAGGATTTAAGATACTTGAATCATATAATTCAAGCTCTAGAGAATTATGTTCAATCAAATTACAAAAATCATTATATGGATTGAAACAATCAGGACAAATGTTGTACAATCGCTTAAGTGAGTATTTATGGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGTGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTTAAATGAAAGATCTTGGTAAGACAAAATTTTTCCTTGGCTTACAAATCGAGCACTTAGCCGATGAAATTTGTATTCATCAATCGACATATACAAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGTGGATGCTGGATATTTATCTGATCCACGCAAAACAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAATTGCTATATCTTGGCGGTTGTAAAGCAAACCATGACGACCACTTCATCGAATCATGCAGAAATTCGTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACTAGAACTCTTATATACGCATGACCTTGACGAAAATGGTGACATCAGTGTTCAACAAATTTCTTCAAAAGACAACTTGGCGGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGTGA

mRNA sequence

ATGGGATTTAAATGGGTATTTGTGCGTAAACGAAATAAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTTTCTCAAAGACCAGACATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGACTATATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTGTATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTAAAGGATTTAAGATACTTGAATCATATAATTCAAGCTCTAGAGAATTATGTTCAATCAAATTACAAAAATCATTATATGGATTGAAACAATCAGGACAAATATTCTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATACACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACTAGAACTCTTATATACGCATGACCTTGACGAAAATGGTGACATCAGTGTTCAACAAATTTCTTCAAAAGACAACTTGGCGGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGTGA

Coding sequence (CDS)

ATGGGATTTAAATGGGTATTTGTGCGTAAACGAAATAAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTTTCTCAAAGACCAGACATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGACTATATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTGTATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTAAAGGATTTAAGATACTTGAATCATATAATTCAAGCTCTAGAGAATTATGTTCAATCAAATTACAAAAATCATTATATGGATTGAAACAATCAGGACAAATATTCTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATACACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACTAGAACTCTTATATACGCATGACCTTGACGAAAATGGTGACATCAGTGTTCAACAAATTTCTTCAAAAGACAACTTGGCGGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGTGA

Protein sequence

MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQIFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYTQIKGGYIKGDRTKHISLELLYTHDLDENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGM
Homology
BLAST of Pay0017270 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 105.9 bits (263), Expect = 6.8e-22
Identity = 55/120 (45.83%), Postives = 82/120 (68.33%), Query Frame = 0

Query: 4    KWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICENLD 63
            +WVF  K N+     RYKARLVA+GF+Q+  IDYEET++PV    + R+++SL I  NL 
Sbjct: 938  RWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLK 997

Query: 64   MHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQIFY 123
            +H MDV TA+L G+L+ EIYM++P+G       + +S  +C  KL K++YGLKQ+ + ++
Sbjct: 998  VHQMDVKTAFLNGTLKEEIYMRLPQGI------SCNSDNVC--KLNKAIYGLKQAARCWF 1049

BLAST of Pay0017270 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-21
Identity = 53/121 (43.80%), Postives = 83/121 (68.60%), Query Frame = 0

Query: 4   KWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICENLD 63
           KWVF  K++ + ++ RYKARLV +GF Q+  ID++E +SPVV   ++R ++SL    +L+
Sbjct: 858 KWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLE 917

Query: 64  MHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQIFY 123
           +  +DV TA+L+G LE EIYM+ P+GF++      + ++    KL KSLYGLKQ+ + +Y
Sbjct: 918 VEQLDVKTAFLHGDLEEEIYMEQPEGFEV------AGKKHMVCKLNKSLYGLKQAPRQWY 972

Query: 124 M 125
           M
Sbjct: 978 M 972

BLAST of Pay0017270 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-20
Identity = 47/125 (37.60%), Postives = 81/125 (64.80%), Query Frame = 0

Query: 1    MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
            +G +W+F +K N +  + RYKARLVA+G++QRP +DY ET+SPV+ + ++R ++ + +  
Sbjct: 998  VGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDR 1057

Query: 61   NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
            +  +  +DV  A+L G+L +++YM  P GF          R     KL+K+LYGLKQ+ +
Sbjct: 1058 SWPIRQLDVNNAFLQGTLTDDVYMSQPPGF------IDKDRPNYVCKLRKALYGLKQAPR 1116

Query: 121  IFYMD 126
             +Y++
Sbjct: 1118 AWYVE 1116

BLAST of Pay0017270 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.9e-20
Identity = 46/125 (36.80%), Postives = 81/125 (64.80%), Query Frame = 0

Query: 1    MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
            +G +W+F +K N +  + RYKARLVA+G++QRP +DY ET+SPV+ + ++R ++ + +  
Sbjct: 981  VGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDR 1040

Query: 61   NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
            +  +  +DV  A+L G+L +E+YM  P GF          R     +L+K++YGLKQ+ +
Sbjct: 1041 SWPIRQLDVNNAFLQGTLTDEVYMSQPPGFV------DKDRPDYVCRLRKAIYGLKQAPR 1099

Query: 121  IFYMD 126
             +Y++
Sbjct: 1101 AWYVE 1099

BLAST of Pay0017270 vs. ExPASy Swiss-Prot
Match: Q12490 (Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-BL PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.5e-08
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 0

Query: 5    WVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICENLDM 64
            ++F RKR+       +KAR VA+G  Q PD       S  V    L   +SL +  N  +
Sbjct: 1288 FIFNRKRDGT-----HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYHI 1347

Query: 65   HLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQIFY 124
              +D+ +AYLY  ++ E+Y++ P    + +           I+L+KSLYGLKQSG  +Y
Sbjct: 1348 TQLDISSAYLYADIKEELYIRPPPHLGMNDKL---------IRLKKSLYGLKQSGANWY 1392

BLAST of Pay0017270 vs. ExPASy TrEMBL
Match: A0A438BTB5 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_44 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.3e-87
Identity = 196/420 (46.67%), Postives = 227/420 (54.05%), Query Frame = 0

Query: 1   MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
           +G+KWVFVRKRN+NNE+ RYKARLVAQGFSQRP IDYEETYSPV+DAIT R+LISL + E
Sbjct: 148 VGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSE 207

Query: 61  NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
            LDM LMDV+TAYLYGS++N+IYMKIP+GFK+ ++ N+  R + SIKLQ+SLYGLKQSG+
Sbjct: 208 GLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGR 267

Query: 121 I-----------------------------------FYMDKAHPLNIPMVVRSLDVKKDI 180
           +                                   FYMDKAHPL+ PMV RSLDVKKD 
Sbjct: 268 MWYNRLSEYLLKEGSSIFQMEFLVHQSTYIKKVLKRFYMDKAHPLSSPMVDRSLDVKKDP 327

Query: 181 FRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYT-------------- 240
           FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSVNLLARY+              
Sbjct: 328 FRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHI 387

Query: 241 ------------------------------------------------------------ 256
                                                                       
Sbjct: 388 LRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNCNGTAISWRSVKQT 447

BLAST of Pay0017270 vs. ExPASy TrEMBL
Match: Q949J4 (Putative copia-like polyprotein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 5.3e-86
Identity = 185/361 (51.25%), Postives = 213/361 (59.00%), Query Frame = 0

Query: 1   MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
           +G+KW+FVRKRN+  EV RYKARLVAQGFSQRP IDY ETYSPVVDAIT RYLI+L + E
Sbjct: 413 VGYKWIFVRKRNEKGEVMRYKARLVAQGFSQRPGIDYMETYSPVVDAITFRYLINLAVYE 472

Query: 61  NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
            L+M LMDVVTAYLYGSL++ I+MKIP+ FK+ E+Y   SRE CSIKLQKSLYGLKQSG+
Sbjct: 473 KLEMRLMDVVTAYLYGSLDHNIFMKIPEAFKVPETY-KDSRETCSIKLQKSLYGLKQSGR 532

Query: 121 I----------------------------------------------------------- 180
           +                                                           
Sbjct: 533 MWYNRLSEYLLKKGYKNDSICPCIFIKRLGSEFVIIAVYVDDLNIIGTRKELLEAVECLK 592

Query: 181 ----------------------------------------FYMDKAHPLNIPMVVRSLDV 240
                                                   FYMD +HPL+ PMVVRSLD+
Sbjct: 593 REFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMVVRSLDI 652

Query: 241 KKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARY-------TQIK 256
             D FRP+E++EELLG E PYLSAIGALMYL NNTRPDI F+      Y        Q+K
Sbjct: 653 NTDPFRPQENDEELLGDETPYLSAIGALMYLVNNTRPDICFANIPTTMYEDNAACIAQLK 712

BLAST of Pay0017270 vs. ExPASy TrEMBL
Match: A0A2N9J4G7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59221 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 4.6e-82
Identity = 198/484 (40.91%), Postives = 231/484 (47.73%), Query Frame = 0

Query: 1   MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
           +G+KWVFVRKRN+ NE+ RYKARLVAQGFSQRP IDYEETYSPV+DAIT R+LISL + E
Sbjct: 298 VGYKWVFVRKRNEKNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLVVTE 357

Query: 61  NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
           NLDM LMDVVTAYLYGSL+N+IYMKIP+G+K+ E+YNS SR + SIKLQ+SLYGLKQSG+
Sbjct: 358 NLDMRLMDVVTAYLYGSLDNDIYMKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGR 417

Query: 121 I----------------------------------------------------------- 180
           +                                                           
Sbjct: 418 MWYNRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLK 477

Query: 181 ----------------------------------------FYMDKAHPLNIPMVVRSLDV 240
                                                   F+MDKAHPL+ PMVVRSLDV
Sbjct: 478 NEFEMKDLGKTKFCLGLQIEHLPDGILIHQSTYIEKVLKHFHMDKAHPLSTPMVVRSLDV 537

Query: 241 KKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARY----------- 256
           KKD FRP+E  EE LGPEVPYLSAIGALMYLAN TRPDIAFSVNLLARY           
Sbjct: 538 KKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNG 597

BLAST of Pay0017270 vs. ExPASy TrEMBL
Match: A0A2N9FK49 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15524 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 4.6e-82
Identity = 198/484 (40.91%), Postives = 231/484 (47.73%), Query Frame = 0

Query: 1   MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
           +G+KWVFVRKRN+ NE+ RYKARLVAQGFSQRP IDYEETYSPV+DAIT R+LISL + E
Sbjct: 232 VGYKWVFVRKRNEKNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLVVTE 291

Query: 61  NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
           NLDM LMDVVTAYLYGSL+N+IYMKIP+G+K+ E+YNS SR + SIKLQ+SLYGLKQSG+
Sbjct: 292 NLDMRLMDVVTAYLYGSLDNDIYMKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGR 351

Query: 121 I----------------------------------------------------------- 180
           +                                                           
Sbjct: 352 MWYNRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEKLTKTADYLN 411

Query: 181 ----------------------------------------FYMDKAHPLNIPMVVRSLDV 240
                                                   F+MDKAHPL+ PMVVRSLDV
Sbjct: 412 NEFEMKDLGKTKFCLGLQIEHLPDGILIHQSTYIEKVLKHFHMDKAHPLSTPMVVRSLDV 471

Query: 241 KKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARY----------- 256
           KKD FRP+E  EE LGPEVPYLSAIGALMYLAN TRPDIAFSVNLLARY           
Sbjct: 472 KKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNG 531

BLAST of Pay0017270 vs. ExPASy TrEMBL
Match: A0A2N9I099 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45690 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 4.6e-82
Identity = 198/484 (40.91%), Postives = 231/484 (47.73%), Query Frame = 0

Query: 1   MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
           +G+KWVFVRKRN+ NE+ RYKARLVAQGFSQRP IDYEETYSPV+DAIT R+LISL + E
Sbjct: 309 VGYKWVFVRKRNEKNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLVVTE 368

Query: 61  NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
           NLDM LMDVVTAYLYGSL+N+IYMKIP+G+K+ E+YNS SR + SIKLQ+SLYGLKQSG+
Sbjct: 369 NLDMRLMDVVTAYLYGSLDNDIYMKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGR 428

Query: 121 I----------------------------------------------------------- 180
           +                                                           
Sbjct: 429 MWYNRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLK 488

Query: 181 ----------------------------------------FYMDKAHPLNIPMVVRSLDV 240
                                                   F+MDKAHPL+ PMVVRSLDV
Sbjct: 489 NEFEMKDLGKTKFCLGLQIEHLPDGILIHQSTYIEKVLKHFHMDKAHPLSTPMVVRSLDV 548

Query: 241 KKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARY----------- 256
           KKD FRP+E  EE LGPEVPYLSAIGALMYLAN TRPDIAFSVNLLARY           
Sbjct: 549 KKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNG 608

BLAST of Pay0017270 vs. NCBI nr
Match: RVW14192.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 332.8 bits (852), Expect = 2.6e-87
Identity = 196/420 (46.67%), Postives = 227/420 (54.05%), Query Frame = 0

Query: 1   MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
           +G+KWVFVRKRN+NNE+ RYKARLVAQGFSQRP IDYEETYSPV+DAIT R+LISL + E
Sbjct: 148 VGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSE 207

Query: 61  NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
            LDM LMDV+TAYLYGS++N+IYMKIP+GFK+ ++ N+  R + SIKLQ+SLYGLKQSG+
Sbjct: 208 GLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGR 267

Query: 121 I-----------------------------------FYMDKAHPLNIPMVVRSLDVKKDI 180
           +                                   FYMDKAHPL+ PMV RSLDVKKD 
Sbjct: 268 MWYNRLSEYLLKEGSSIFQMEFLVHQSTYIKKVLKRFYMDKAHPLSSPMVDRSLDVKKDP 327

Query: 181 FRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYT-------------- 240
           FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSVNLLARY+              
Sbjct: 328 FRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHI 387

Query: 241 ------------------------------------------------------------ 256
                                                                       
Sbjct: 388 LRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNCNGTAISWRSVKQT 447

BLAST of Pay0017270 vs. NCBI nr
Match: AAK84483.1 (putative copia-like polyprotein [Solanum lycopersicum])

HSP 1 Score: 327.4 bits (838), Expect = 1.1e-85
Identity = 185/361 (51.25%), Postives = 213/361 (59.00%), Query Frame = 0

Query: 1   MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
           +G+KW+FVRKRN+  EV RYKARLVAQGFSQRP IDY ETYSPVVDAIT RYLI+L + E
Sbjct: 413 VGYKWIFVRKRNEKGEVMRYKARLVAQGFSQRPGIDYMETYSPVVDAITFRYLINLAVYE 472

Query: 61  NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
            L+M LMDVVTAYLYGSL++ I+MKIP+ FK+ E+Y   SRE CSIKLQKSLYGLKQSG+
Sbjct: 473 KLEMRLMDVVTAYLYGSLDHNIFMKIPEAFKVPETY-KDSRETCSIKLQKSLYGLKQSGR 532

Query: 121 I----------------------------------------------------------- 180
           +                                                           
Sbjct: 533 MWYNRLSEYLLKKGYKNDSICPCIFIKRLGSEFVIIAVYVDDLNIIGTRKELLEAVECLK 592

Query: 181 ----------------------------------------FYMDKAHPLNIPMVVRSLDV 240
                                                   FYMD +HPL+ PMVVRSLD+
Sbjct: 593 REFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMVVRSLDI 652

Query: 241 KKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARY-------TQIK 256
             D FRP+E++EELLG E PYLSAIGALMYL NNTRPDI F+      Y        Q+K
Sbjct: 653 NTDPFRPQENDEELLGDETPYLSAIGALMYLVNNTRPDICFANIPTTMYEDNAACIAQLK 712

BLAST of Pay0017270 vs. NCBI nr
Match: RVX16158.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 310.8 bits (795), Expect = 1.1e-80
Identity = 197/484 (40.70%), Postives = 228/484 (47.11%), Query Frame = 0

Query: 1    MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
            +G+KWVFVRKRN+NNE+ RYKARLVAQGFSQRP IDYEETYSPV+DAIT R+LISL + E
Sbjct: 595  VGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSE 654

Query: 61   NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
             LDM LMDV+TAYLYGS++N+IYMKIP+GFK+ ++ N+  R + SIKLQ+SLYGLKQSG+
Sbjct: 655  GLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGR 714

Query: 121  I----------------------------------------------------------- 180
            +                                                           
Sbjct: 715  MWYNRLSEYLLKKGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLK 774

Query: 181  ----------------------------------------FYMDKAHPLNIPMVVRSLDV 240
                                                    FYMDKAHPL+ PMVVRSLDV
Sbjct: 775  KEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKCFYMDKAHPLSSPMVVRSLDV 834

Query: 241  KKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYT---------- 256
            KKD FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSVNLLARY+          
Sbjct: 835  KKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSTPTRRHWNG 894

BLAST of Pay0017270 vs. NCBI nr
Match: RVW13569.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 310.8 bits (795), Expect = 1.1e-80
Identity = 197/484 (40.70%), Postives = 228/484 (47.11%), Query Frame = 0

Query: 1    MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
            +G+KWVFVRKRN+NNE+ RYKARLVAQGFSQRP IDYEETYSPV+DAIT R+LISL + E
Sbjct: 638  VGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSE 697

Query: 61   NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
             LDM LMDV+TAYLYGS++N+IYMKIP+GFK+ ++ N+  R + SIKLQ+SLYGLKQSG+
Sbjct: 698  GLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGR 757

Query: 121  I----------------------------------------------------------- 180
            +                                                           
Sbjct: 758  MWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLK 817

Query: 181  ----------------------------------------FYMDKAHPLNIPMVVRSLDV 240
                                                    FYMDKAHPL+ PMVVRSLDV
Sbjct: 818  KEFEMKDLGKTKFCLSLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDV 877

Query: 241  KKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYT---------- 256
            KKD FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSVNLLARY+          
Sbjct: 878  KKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNG 937

BLAST of Pay0017270 vs. NCBI nr
Match: RVW59049.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 310.8 bits (795), Expect = 1.1e-80
Identity = 197/484 (40.70%), Postives = 228/484 (47.11%), Query Frame = 0

Query: 1    MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
            +G+KWVFVRKRN+NNE+ RYKARLVAQGFSQRP IDYEETYSPV+DAIT R+LISL + E
Sbjct: 582  VGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSE 641

Query: 61   NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
             LDM LMDV+TAYLYGS++N+IYMKIP+GFK+ ++ N+  R + SIKLQ+SLYGLKQSG+
Sbjct: 642  GLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGR 701

Query: 121  I----------------------------------------------------------- 180
            +                                                           
Sbjct: 702  MWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLK 761

Query: 181  ----------------------------------------FYMDKAHPLNIPMVVRSLDV 240
                                                    FYMDKAHPL+ PMVVRSLDV
Sbjct: 762  KEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDV 821

Query: 241  KKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYT---------- 256
            KKD FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSVNLLARY+          
Sbjct: 822  KKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNG 881

BLAST of Pay0017270 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-21
Identity = 46/124 (37.10%), Postives = 81/124 (65.32%), Query Frame = 0

Query: 1   MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISLTICE 60
           +G KWV+  K N +  + RYKARLVA+G++Q+  ID+ ET+SPV    +++ +++++   
Sbjct: 127 IGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIY 186

Query: 61  NLDMHLMDVVTAYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQKSLYGLKQSGQ 120
           N  +H +D+  A+L G L+ EIYMK+P G+   +  +     +C +K  KS+YGLKQ+ +
Sbjct: 187 NFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASR 246

Query: 121 IFYM 125
            +++
Sbjct: 247 QWFL 248

BLAST of Pay0017270 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-07
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 1   MGFKWVFVRKRNKNNEVTRYKARLVAQGFSQRPDIDYEETYSPVVDAITLRYLISL 57
           +G KWVF  K + +  + R KARLVA+GF Q   I + ETYSPVV   T+R ++++
Sbjct: 69  LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNV 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P041466.8e-2245.83Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P109782.0e-2143.80Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q94HW22.2e-2037.60Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT944.9e-2036.80Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q124909.5e-0833.61Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2... [more]
Match NameE-valueIdentityDescription
A0A438BTB51.3e-8746.67Copia protein OS=Vitis vinifera OX=29760 GN=GIP_44 PE=4 SV=1[more]
Q949J45.3e-8651.25Putative copia-like polyprotein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
A0A2N9J4G74.6e-8240.91Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
A0A2N9FK494.6e-8240.91Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
A0A2N9I0994.6e-8240.91Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
Match NameE-valueIdentityDescription
RVW14192.12.6e-8746.67Copia protein [Vitis vinifera][more]
AAK84483.11.1e-8551.25putative copia-like polyprotein [Solanum lycopersicum][more]
RVX16158.11.1e-8040.70Copia protein [Vitis vinifera][more]
RVW13569.11.1e-8040.70Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW59049.11.1e-8040.70Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
AT4G23160.13.5e-2137.10cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.11.7e-0746.43Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..124
e-value: 5.9E-33
score: 114.5
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 5..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0017270.1Pay0017270.1mRNA