Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTGGACATGAGGTGTTGGAGAGCCATTATATCAGGGTGGGAGCATCTCACTGAAAAGGATGAAACCAGTAAAGTTACACGAAAGTCTTAACTAAAGTGGACAAGCGAAGAAGATGATGCAGCCGTGGGCAACTCACGTGCACTGAATGCACTATTCAATGTCGTTGATCCAAACATTTTTAAGCTAATCAACACCTGTAAGTCGGCTAAGGTCGCATGGGATACCCTAGAGGTAGCCTTTGAAGGAACGTCAAAGGTGAAAATCTCACGGTTGCAGATCCTGACATCTCATTTCGAAGCACTTCAAATGACTGAAGAAGAGACTATCGCTGAGTTCAATGTTCGAGTACTTGACATTACCAACGAATCAGATGTGCTAGAAGAAAAAATGTCTGATTCAAAACTAGTTTGGAAAGTCCTTAGATCTCTACCATCGAAGTTCAACATGAAAGTCACTACGATCGAGGAAGCCAATGACCTATCAAAAATGAAGCTGGATGAACTGTTCGGGTCATTGTGTACGTTCGAAATACACCTAGGAGACAGTGCAAGCAAGAGGAAACCTGGTCTTGCTCTAACCTCAGTAAAGGAAGAATCCACAAAGGAGTACAGAATATCTCAAAGTAACAACTCTCTAGCAGAATCTATGGCATTACTGACTAAGTAGGTTGCAAAACTCAAGAGTCAGTTTCACAAACACATTGGCAGTTAATGTAACAGCCGCGAAGCCACCTCAGCTACTCAACCTATAATATCAAGCTCTTCTTCATCTGGACTGTACCGAAGAAAGGACCACAAACGAAATGAAAAGGACAATGGCTCTTCAAAATTTGAGAAGTCTGGCAAATGAATCAGGTGTCATGAGTGTGAAGGATTTGGACACATTCAAACTAAATGTGCAACCTATCTCAAATGCAAGAAGAAGAGTCTGGTAGCCACCTTATCAGACGAAGAAGACTATTCTGAAAGTGATGATGAAGAAGTAGGATTAGCCTTGATCAGTATCACCACTATGAACAAAGAAGAAGCCGCACAAGTGACCTCCCAAGCATCAGACCAGCAGGAATCAATGATAGATGACTGTCTCAATGACAATATAGTGCAAAGGAAGTGGAAGGAAGATCAAGCAATCATCATACAACAACAAGAAAGGATACAATGCTTGATGGAAAAAATCAAAGCTTCTTGTCCTCAATAGTTACTCTAAAAGCTGAATTAAAGGAAGCCAAAAATCAATTTGAAGAACTAACCAAATCTGTAAAGATGTTGGCAAACGGGTCTAAAAAACTAGATGATTTAATTGGCCAAGGAAAGAGATACAATGACAAACGAGGTCTGGGTTTTATAGGAAGGAAAAGCACAAGGAATAGGACCACTGTGTTTGTACGAGAGTGTGACACTCAGAACAGTCAAACAGAAAATGCAAAAGGGAAGTACATAGTGGATGTGGTGAACAGACGAAAAACTTGTTATTTATATGGAAAGAAAAAAGGAAGTACACAGGGAAGTACACATTCGACCTTACTGCTTTCAACTGCAAAATCCCATGTATCATCAACATGCTCTCAGTCAAAGCATATATCTGAACGACGAAGGACAGAATGGCACCCAAAAATGAATTCGAAAAACTGCAAGGTGGCTCTTACTTCTGTTAATAATCTTAATTCTTCTGACTGGTACTTTGATAGTGGTTGTTCCAGGCATATGACGAGGAATGCCGCCTTCTTCTCAGAACTTAGCGAATGCAACGCAGGATCCGTGGTTTTTAGTGATGGAGAAAAAGGTAGAATCATTGGTAAAGGAACTATTGATCACCCTGGTTTGCCCTATCTGCTTGATGTTTGCTTGGTGCAGGGGTTGTCAGCAAATCTGATCAGCATTAGTCAATTGTGCGATCAAGGATATCAAGTCAGCTTTAGCAAAGACAGATGCAATGTGGTAGATAGTCAAAACAAAGTCTTTCTTAGCGGAACAAGGCTGTCTAACAACTGTTATCACTGGGATTTGGAGGTCAATTTATGCAACCTGTCAAAGGCGGAAGAGGCTGGTCTATGGCACAAGCCATTGGAACACATCAGTGGAACTTCCATTGCCAAAATTGCAAAGGTAGACACCACCATAGGCCTTCCCACTCTCACTTTTAATCCACATGATTGCTGCTCAAATTGTCCTGTTGGAAAGCAAGTCAAGTCATCCCATAAGTCCACCCGTCTGCCCTGTACTTCATGCATTCTGGAACTTCTCCATATAAATCTCATGGGGCCAATGCAAACAGAAAGTCTGGGGGGAAAAAGGTATGCTCTAGTATGTGTAGACAATTTTTCTTGCTATACCTGGGTGAAATTTATTTATGATAAATCTGAGGCTTTCAAAGTATGTCAAACTCTATTCTTACAAATTCAAAGAGAAAAGAATACAGGTATTTGTCACATACGAAGTGACCATGGCCGTGAGTTTGAAAATAAATATTTTACTGAGTTTTATGAGAATGAAGGAATTTTCCATGAGTTCTTAGCCCCACTAACACCTCAGCATAATGGAGTTGTTGAACGAAATAACAAAACGCTATAGGAAATGGCTCGGGTGATGATTCACGCAAAGCATCTGCCCATTTACTTATGGGCTGAAGCTCTAAATATTGCTTGTCACATACACAACCGGGTCAATCTTCGTCTTGGGACAATTACTACTCCATATGAACTCTGGAAAGGGAGAAAATCGAATGTGAAGTACTTTCACATTTTTGGTAGTACATGTTTTATTTTGAGTGACAGAGAGCATCATCGAAAGTGGGATTCAAAGTCTAATAGAGGAATATTTCTTGGCTACTCGACTAACAGCTGAGCCTACAGAGTCTATAATCGGCGTACTAGGACAGTTATGGAATCCGTTAATGTCATCATAGATGATCATGAGAAAGTCTCTATTGGAAGCATTGATGAAGAAGATGGAGATATTTGGGCTCCCTACTCCCAGAAAACTAAAACTTCGGTGTCTGAACTTTCTTTCCTAACCGACGATAAAGATAATTCATCTTCTCACACAAATGTTGACAGCATGGACATGTCTATCGAGCCTACATCAGTTGGTCACTTTGACACCAGTGCAAGTGAAGCATCAGTGTCTGCTTGTTAG
mRNA sequence
ATGTCTCTGGACATGAGGCATATGACGAGGAATGCCGCCTTCTTCTCAGAACTTAGCGAATGCAACGCAGGATCCGTGGTTTTTAGTGATGGAGAAAAAGCAAATCTGATCAGCATTAGTCAATTGTGCGATCAAGGATATCAAGTCAGCTTTAGCAAAGACAGATGCAATGTGGTAGATAGTCAAAACAAAGTCTTTCTTAGCGGAACAAGGCTGTCTAACAACTGTTATCACTGGGATTTGGAGCCATTGGAACACATCAGTGGAACTTCCATTGCCAAAATTGCAAAGGTAGACACCACCATAGGCCTTCCCACTCTCACTTTTAATCCACATGATTGCTGCTCAAATTGTCCTGTTGGAAAGCAAGTCAAGTCATCCCATAAGTCCACCCGTCTGCCCTGTACTTCATGCATTCTGGAACTTCTCCATATAAATCTCATGGGGCCAATGCAAACAGAAAGTCTGGGGGGAAAAAGGTATGCTCTAGAAATGGCTCGGGTGATGATTCACGCAAAGCATCTGCCCATTTACTTATGGGCTGAAGCTCTAAATATTGCTTGTCACATACACAACCGGTACTTTCACATTTTTGGTAGTACATGTTTTATTTTGAGTGACAGAGAGCATCATCGAAAGTGGGATTCAAAGTCTAATAGAGGAATATTTCTTGTCTATAATCGGCGTACTAGGACAGTTATGGAATCCGTTAATGTCATCATAGATGATCATGAGAAAGTCTCTATTGGAAGCATTGATGAAGAAGATGGAGATATTTGGGCTCCCTACTCCCAGAAAACTAAAACTTCGGTGTCTGAACTTTCTTTCCTAACCGACGATAAAGATAATTCATCTTCTCACACAAATGTTGACAGCATGGACATGTCTATCGAGCCTACATCAGTTGGTCACTTTGACACCAGTGCAAGTGAAGCATCAGTGTCTGCTTGTTAG
Coding sequence (CDS)
ATGTCTCTGGACATGAGGCATATGACGAGGAATGCCGCCTTCTTCTCAGAACTTAGCGAATGCAACGCAGGATCCGTGGTTTTTAGTGATGGAGAAAAAGCAAATCTGATCAGCATTAGTCAATTGTGCGATCAAGGATATCAAGTCAGCTTTAGCAAAGACAGATGCAATGTGGTAGATAGTCAAAACAAAGTCTTTCTTAGCGGAACAAGGCTGTCTAACAACTGTTATCACTGGGATTTGGAGCCATTGGAACACATCAGTGGAACTTCCATTGCCAAAATTGCAAAGGTAGACACCACCATAGGCCTTCCCACTCTCACTTTTAATCCACATGATTGCTGCTCAAATTGTCCTGTTGGAAAGCAAGTCAAGTCATCCCATAAGTCCACCCGTCTGCCCTGTACTTCATGCATTCTGGAACTTCTCCATATAAATCTCATGGGGCCAATGCAAACAGAAAGTCTGGGGGGAAAAAGGTATGCTCTAGAAATGGCTCGGGTGATGATTCACGCAAAGCATCTGCCCATTTACTTATGGGCTGAAGCTCTAAATATTGCTTGTCACATACACAACCGGTACTTTCACATTTTTGGTAGTACATGTTTTATTTTGAGTGACAGAGAGCATCATCGAAAGTGGGATTCAAAGTCTAATAGAGGAATATTTCTTGTCTATAATCGGCGTACTAGGACAGTTATGGAATCCGTTAATGTCATCATAGATGATCATGAGAAAGTCTCTATTGGAAGCATTGATGAAGAAGATGGAGATATTTGGGCTCCCTACTCCCAGAAAACTAAAACTTCGGTGTCTGAACTTTCTTTCCTAACCGACGATAAAGATAATTCATCTTCTCACACAAATGTTGACAGCATGGACATGTCTATCGAGCCTACATCAGTTGGTCACTTTGACACCAGTGCAAGTGAAGCATCAGTGTCTGCTTGTTAG
Protein sequence
MSLDMRHMTRNAAFFSELSECNAGSVVFSDGEKANLISISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDLEPLEHISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQTESLGGKRYALEMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGSTCFILSDREHHRKWDSKSNRGIFLVYNRRTRTVMESVNVIIDDHEKVSIGSIDEEDGDIWAPYSQKTKTSVSELSFLTDDKDNSSSHTNVDSMDMSIEPTSVGHFDTSASEASVSAC
Homology
BLAST of Pay0017139 vs. ExPASy TrEMBL
Match:
A0A5A7T4Y7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00680 PE=4 SV=1)
HSP 1 Score: 415.6 bits (1067), Expect = 1.8e-112
Identity = 232/354 (65.54%), Postives = 248/354 (70.06%), Query Frame = 0
Query: 6 RHMTRNAAFFSELSECNAGSVVFSDGEK---------------------------ANLIS 65
RHM N AFFSELSECNAG +VF DG K ANLIS
Sbjct: 29 RHMIGNVAFFSELSECNAGFMVFGDGGKGRIIGKRTIDHPGLPYLIDVRLVQGLSANLIS 88
Query: 66 ISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDL----------------- 125
ISQLCDQ YQVS SKDRCNVVDSQNKVFLSGTRLS+NCYHWD
Sbjct: 89 ISQLCDQRYQVSLSKDRCNVVDSQNKVFLSGTRLSDNCYHWDSKVNLCNLSKAEEGSLLH 148
Query: 126 EPLEHISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILE 185
+ L HISGTSIAK+AKVD IGL TLTFNP +CCS+CPVGKQVKSSHKST LP T C LE
Sbjct: 149 KRLGHISGTSIAKVAKVDAIIGLLTLTFNPQECCSDCPVGKQVKSSHKSTCLPSTLCTLE 208
Query: 186 LLHINLMGPMQTESLGGKRYALEMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGST 245
LLHI+LMGPMQTESLGGK+ EMARVMIHAKHLPIY WAEALN ACH HNR
Sbjct: 209 LLHIDLMGPMQTESLGGKK---EMARVMIHAKHLPIYFWAEALNTACHKHNR-------- 268
Query: 246 CFILSDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVSIGS 305
WDSKS++GIFL VYN RTRTVMES+NVIIDD EKVS GS
Sbjct: 269 ------------WDSKSHKGIFLGYSTNSQAYIVYNWRTRTVMESINVIIDDDEKVSNGS 328
BLAST of Pay0017139 vs. ExPASy TrEMBL
Match:
A0A5D3C9Q6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00180 PE=4 SV=1)
HSP 1 Score: 319.3 bits (817), Expect = 1.8e-83
Identity = 205/477 (42.98%), Postives = 237/477 (49.69%), Query Frame = 0
Query: 6 RHMTRNAAFFSELSECNAGSVVFSDGEK---------------------------ANLIS 65
RHMT NA FFSELSEC AGSVVF DG K ANLIS
Sbjct: 82 RHMTGNADFFSELSECKAGSVVFEDGGKGKIIGKGTINRPGLPFLLDVRLVQGLSANLIS 141
Query: 66 ISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDLE---------------- 125
SQLCDQGY+V+FSKDRCNV+D QNKVFLSGTRLS+NCYHWD E
Sbjct: 142 TSQLCDQGYKVNFSKDRCNVLDGQNKVFLSGTRLSDNCYHWDAEVTLCNLSKVEEAGLWH 201
Query: 126 -PLEHISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILE 185
L H+ G +I+K+ K + IGLP L+F+ + CS CP GKQVKS HK + TS ILE
Sbjct: 202 KRLGHLGGATISKVIKANAIIGLPPLSFSSLESCSECPAGKQVKSVHKPVNISLTSHILE 261
Query: 186 LLHINLMGPMQTESLGGKRYAL-------------------------------------- 245
LLHI+LM PMQTESLG KRYA+
Sbjct: 262 LLHIDLMRPMQTESLGRKRYAVVCVDDFSRYTWIKFILEKLETFKTCQTLVTQLQREKNT 321
Query: 246 ---------------------------------------------------EMARVMIHA 305
EMARVMIHA
Sbjct: 322 GIGRIRTEHGCEFENKHFAEFCDNEGIFHEFSAQLTPQENGVVEKRNQTLQEMARVMIHA 381
Query: 306 KHLPIYLWAEALNIACHIHNR-----------------------YFHIFGSTCFILSDRE 317
K LPI WAEALN ACHIHNR YFHIFG TCFILSDR+
Sbjct: 382 KQLPIQFWAEALNTACHIHNRVILRPRTTTTSYELWKGRKPNVKYFHIFGGTCFILSDRD 441
BLAST of Pay0017139 vs. ExPASy TrEMBL
Match:
A0A1S4E3G4 (uncharacterized protein LOC107991705 OS=Cucumis melo OX=3656 GN=LOC107991705 PE=4 SV=1)
HSP 1 Score: 317.8 bits (813), Expect = 5.2e-83
Identity = 185/304 (60.86%), Postives = 203/304 (66.78%), Query Frame = 0
Query: 1 MSLDMRHMTRNAAFFSELSECNAGSVVFSDGEK---ANLISISQLCDQGYQVSFSKDRCN 60
MSLDMRHMT N AFFSELSECNA S+V EK ANLI+I QLCDQGYQVSFSKDRCN
Sbjct: 33 MSLDMRHMTGNVAFFSELSECNAKSMVLVMEEKRLLANLINIIQLCDQGYQVSFSKDRCN 92
Query: 61 VVDSQNKVFLSG--------TRLSNNCY-----HWDLEPL--EHISGTSIAKIAKVDTTI 120
VV + K F + TR+ + + L+ L +I+GTSIAK+AK D I
Sbjct: 93 VVVVKTKSFSAKQDCLTTVITRIQRSIFVICQRRRKLKSLGRYNINGTSIAKVAKDDAII 152
Query: 121 GLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQTESLGGKRYA 180
GLPTLTFNP +CCS+CP GKQVKSS KST LP TS LELL I+LM PMQT SLG ++
Sbjct: 153 GLPTLTFNPQECCSDCPTGKQVKSSDKSTSLPSTSRTLELLRIDLMRPMQTNSLGARKKG 212
Query: 181 L-----------------EMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGSTCFIL 240
L E ARVMIHAKHLPIY W EALN CHIHNRY IL
Sbjct: 213 LLTPQQNDVVERKNRTLQEKARVMIHAKHLPIYFWVEALNTVCHIHNRYM-------LIL 272
Query: 241 SDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVSIGSIDEE 260
SDREHHRKWDSKS+RGIFL VYNR R VMESVNVIIDDHEKVS GS+DEE
Sbjct: 273 SDREHHRKWDSKSDRGIFLGYSTNSRAYRVYNRHMRIVMESVNVIIDDHEKVSNGSVDEE 329
BLAST of Pay0017139 vs. ExPASy TrEMBL
Match:
A0A5D3DVK5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold742G00060 PE=4 SV=1)
HSP 1 Score: 308.9 bits (790), Expect = 2.4e-80
Identity = 176/288 (61.11%), Postives = 194/288 (67.36%), Query Frame = 0
Query: 7 HMTRNAAFFSELSECNAGSVVFSDGEK---ANLISISQLCDQGYQVSFSKDRCNVVDSQN 66
HMT N AFFSELSECNA S+V EK ANLI+I QLCDQGYQVSFSKDRCNVV +
Sbjct: 78 HMTGNVAFFSELSECNAKSMVLVMEEKRLLANLINIIQLCDQGYQVSFSKDRCNVVVVKT 137
Query: 67 KVFLSGTRLSNNCYHWDLEPLE-----HISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNC 126
K F + +C + ++ +I+GTSIAK+AK D IGLPTLTFNP +CCS+C
Sbjct: 138 KSFSA----KQDCLTTVITRIQSLGRYNINGTSIAKVAKDDAIIGLPTLTFNPQECCSDC 197
Query: 127 PVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQTESLGGKRYAL--------------- 186
P GKQVKSS KST LP TS LELL I+LM PMQT SLG ++ L
Sbjct: 198 PTGKQVKSSDKSTSLPSTSRTLELLRIDLMRPMQTNSLGARKKGLLTPQQNDVVERKNRT 257
Query: 187 --EMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGSTCFILSDREHHRKWDSKSNRG 246
E ARVMIHAKHLPIY W EALN CHIHNRY ILSDREHHRKWDSKS+RG
Sbjct: 258 LQEKARVMIHAKHLPIYFWVEALNTVCHIHNRYM-------LILSDREHHRKWDSKSDRG 317
Query: 247 IFL----------VYNRRTRTVMESVNVIIDDHEKVSIGSIDEEDGDI 260
IFL VYNR R VMESVNVIIDDHEKVS GS+DEEDGDI
Sbjct: 318 IFLGYSTNSRAYRVYNRHMRIVMESVNVIIDDHEKVSNGSVDEEDGDI 354
BLAST of Pay0017139 vs. ExPASy TrEMBL
Match:
A0A5A7TGK3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001130 PE=4 SV=1)
HSP 1 Score: 307.0 bits (785), Expect = 9.2e-80
Identity = 204/429 (47.55%), Postives = 218/429 (50.82%), Query Frame = 0
Query: 1 MSLDMRHMTRNAAFFSELSECNAGSVVFSDGEK--------------------------- 60
MS RHM N AFF ELSECNAG VVF DG K
Sbjct: 165 MSGCSRHMIGNVAFFLELSECNAGFVVFGDGGKGKIIGKGTIDHPRLPYLLDVRLVQGLS 224
Query: 61 ANLISISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDLEPLEHISGTSIA 120
NLISISQLCDQGYQVSFS
Sbjct: 225 VNLISISQLCDQGYQVSFS----------------------------------------- 284
Query: 121 KIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQT 180
LPTL+FNP +CC +C GKQVKSSHKST LP T LELLHI+LMGPMQT
Sbjct: 285 ----------LPTLSFNPQECCPDCLAGKQVKSSHKSTSLPFTLRTLELLHIDLMGPMQT 344
Query: 181 ESLGGK----------------------------------------------------RY 240
ESLGGK R
Sbjct: 345 ESLGGKREKNTGICRIRSDHGREFENKYFTEFCENEGIFLEFSAPLTPQQNGVVERKNRT 404
Query: 241 ALEMARVMIHAKHLPIYLWAEALNIACHIHNR-----------------------YFHIF 300
EMARVMIHAKHLP Y WAEALN ACHIHNR YF IF
Sbjct: 405 LQEMARVMIHAKHLPTYFWAEALNTACHIHNRVTLRPGTITTSYELWKGRKPNVKYFLIF 464
Query: 301 GSTCFILSDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVS 318
G+T FI SD++HHRKWDSKS+RGIFL VYN+RTRTVM+SVNVIIDDH K
Sbjct: 465 GNTYFIFSDKDHHRKWDSKSDRGIFLGYSTNSRAYIVYNQRTRTVMKSVNVIIDDHGK-- 524
BLAST of Pay0017139 vs. NCBI nr
Match:
KAA0037898.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 415.6 bits (1067), Expect = 3.8e-112
Identity = 232/354 (65.54%), Postives = 248/354 (70.06%), Query Frame = 0
Query: 6 RHMTRNAAFFSELSECNAGSVVFSDGEK---------------------------ANLIS 65
RHM N AFFSELSECNAG +VF DG K ANLIS
Sbjct: 29 RHMIGNVAFFSELSECNAGFMVFGDGGKGRIIGKRTIDHPGLPYLIDVRLVQGLSANLIS 88
Query: 66 ISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDL----------------- 125
ISQLCDQ YQVS SKDRCNVVDSQNKVFLSGTRLS+NCYHWD
Sbjct: 89 ISQLCDQRYQVSLSKDRCNVVDSQNKVFLSGTRLSDNCYHWDSKVNLCNLSKAEEGSLLH 148
Query: 126 EPLEHISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILE 185
+ L HISGTSIAK+AKVD IGL TLTFNP +CCS+CPVGKQVKSSHKST LP T C LE
Sbjct: 149 KRLGHISGTSIAKVAKVDAIIGLLTLTFNPQECCSDCPVGKQVKSSHKSTCLPSTLCTLE 208
Query: 186 LLHINLMGPMQTESLGGKRYALEMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGST 245
LLHI+LMGPMQTESLGGK+ EMARVMIHAKHLPIY WAEALN ACH HNR
Sbjct: 209 LLHIDLMGPMQTESLGGKK---EMARVMIHAKHLPIYFWAEALNTACHKHNR-------- 268
Query: 246 CFILSDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVSIGS 305
WDSKS++GIFL VYN RTRTVMES+NVIIDD EKVS GS
Sbjct: 269 ------------WDSKSHKGIFLGYSTNSQAYIVYNWRTRTVMESINVIIDDDEKVSNGS 328
BLAST of Pay0017139 vs. NCBI nr
Match:
KAA0048721.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07908.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 319.3 bits (817), Expect = 3.7e-83
Identity = 205/477 (42.98%), Postives = 237/477 (49.69%), Query Frame = 0
Query: 6 RHMTRNAAFFSELSECNAGSVVFSDGEK---------------------------ANLIS 65
RHMT NA FFSELSEC AGSVVF DG K ANLIS
Sbjct: 82 RHMTGNADFFSELSECKAGSVVFEDGGKGKIIGKGTINRPGLPFLLDVRLVQGLSANLIS 141
Query: 66 ISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDLE---------------- 125
SQLCDQGY+V+FSKDRCNV+D QNKVFLSGTRLS+NCYHWD E
Sbjct: 142 TSQLCDQGYKVNFSKDRCNVLDGQNKVFLSGTRLSDNCYHWDAEVTLCNLSKVEEAGLWH 201
Query: 126 -PLEHISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILE 185
L H+ G +I+K+ K + IGLP L+F+ + CS CP GKQVKS HK + TS ILE
Sbjct: 202 KRLGHLGGATISKVIKANAIIGLPPLSFSSLESCSECPAGKQVKSVHKPVNISLTSHILE 261
Query: 186 LLHINLMGPMQTESLGGKRYAL-------------------------------------- 245
LLHI+LM PMQTESLG KRYA+
Sbjct: 262 LLHIDLMRPMQTESLGRKRYAVVCVDDFSRYTWIKFILEKLETFKTCQTLVTQLQREKNT 321
Query: 246 ---------------------------------------------------EMARVMIHA 305
EMARVMIHA
Sbjct: 322 GIGRIRTEHGCEFENKHFAEFCDNEGIFHEFSAQLTPQENGVVEKRNQTLQEMARVMIHA 381
Query: 306 KHLPIYLWAEALNIACHIHNR-----------------------YFHIFGSTCFILSDRE 317
K LPI WAEALN ACHIHNR YFHIFG TCFILSDR+
Sbjct: 382 KQLPIQFWAEALNTACHIHNRVILRPRTTTTSYELWKGRKPNVKYFHIFGGTCFILSDRD 441
BLAST of Pay0017139 vs. NCBI nr
Match:
XP_016902520.1 (PREDICTED: uncharacterized protein LOC107991705 [Cucumis melo])
HSP 1 Score: 317.8 bits (813), Expect = 1.1e-82
Identity = 185/304 (60.86%), Postives = 203/304 (66.78%), Query Frame = 0
Query: 1 MSLDMRHMTRNAAFFSELSECNAGSVVFSDGEK---ANLISISQLCDQGYQVSFSKDRCN 60
MSLDMRHMT N AFFSELSECNA S+V EK ANLI+I QLCDQGYQVSFSKDRCN
Sbjct: 33 MSLDMRHMTGNVAFFSELSECNAKSMVLVMEEKRLLANLINIIQLCDQGYQVSFSKDRCN 92
Query: 61 VVDSQNKVFLSG--------TRLSNNCY-----HWDLEPL--EHISGTSIAKIAKVDTTI 120
VV + K F + TR+ + + L+ L +I+GTSIAK+AK D I
Sbjct: 93 VVVVKTKSFSAKQDCLTTVITRIQRSIFVICQRRRKLKSLGRYNINGTSIAKVAKDDAII 152
Query: 121 GLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQTESLGGKRYA 180
GLPTLTFNP +CCS+CP GKQVKSS KST LP TS LELL I+LM PMQT SLG ++
Sbjct: 153 GLPTLTFNPQECCSDCPTGKQVKSSDKSTSLPSTSRTLELLRIDLMRPMQTNSLGARKKG 212
Query: 181 L-----------------EMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGSTCFIL 240
L E ARVMIHAKHLPIY W EALN CHIHNRY IL
Sbjct: 213 LLTPQQNDVVERKNRTLQEKARVMIHAKHLPIYFWVEALNTVCHIHNRYM-------LIL 272
Query: 241 SDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVSIGSIDEE 260
SDREHHRKWDSKS+RGIFL VYNR R VMESVNVIIDDHEKVS GS+DEE
Sbjct: 273 SDREHHRKWDSKSDRGIFLGYSTNSRAYRVYNRHMRIVMESVNVIIDDHEKVSNGSVDEE 329
BLAST of Pay0017139 vs. NCBI nr
Match:
TYK27534.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 308.9 bits (790), Expect = 5.0e-80
Identity = 176/288 (61.11%), Postives = 194/288 (67.36%), Query Frame = 0
Query: 7 HMTRNAAFFSELSECNAGSVVFSDGEK---ANLISISQLCDQGYQVSFSKDRCNVVDSQN 66
HMT N AFFSELSECNA S+V EK ANLI+I QLCDQGYQVSFSKDRCNVV +
Sbjct: 78 HMTGNVAFFSELSECNAKSMVLVMEEKRLLANLINIIQLCDQGYQVSFSKDRCNVVVVKT 137
Query: 67 KVFLSGTRLSNNCYHWDLEPLE-----HISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNC 126
K F + +C + ++ +I+GTSIAK+AK D IGLPTLTFNP +CCS+C
Sbjct: 138 KSFSA----KQDCLTTVITRIQSLGRYNINGTSIAKVAKDDAIIGLPTLTFNPQECCSDC 197
Query: 127 PVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQTESLGGKRYAL--------------- 186
P GKQVKSS KST LP TS LELL I+LM PMQT SLG ++ L
Sbjct: 198 PTGKQVKSSDKSTSLPSTSRTLELLRIDLMRPMQTNSLGARKKGLLTPQQNDVVERKNRT 257
Query: 187 --EMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGSTCFILSDREHHRKWDSKSNRG 246
E ARVMIHAKHLPIY W EALN CHIHNRY ILSDREHHRKWDSKS+RG
Sbjct: 258 LQEKARVMIHAKHLPIYFWVEALNTVCHIHNRYM-------LILSDREHHRKWDSKSDRG 317
Query: 247 IFL----------VYNRRTRTVMESVNVIIDDHEKVSIGSIDEEDGDI 260
IFL VYNR R VMESVNVIIDDHEKVS GS+DEEDGDI
Sbjct: 318 IFLGYSTNSRAYRVYNRHMRIVMESVNVIIDDHEKVSNGSVDEEDGDI 354
BLAST of Pay0017139 vs. NCBI nr
Match:
KAA0041176.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 307.0 bits (785), Expect = 1.9e-79
Identity = 204/429 (47.55%), Postives = 218/429 (50.82%), Query Frame = 0
Query: 1 MSLDMRHMTRNAAFFSELSECNAGSVVFSDGEK--------------------------- 60
MS RHM N AFF ELSECNAG VVF DG K
Sbjct: 165 MSGCSRHMIGNVAFFLELSECNAGFVVFGDGGKGKIIGKGTIDHPRLPYLLDVRLVQGLS 224
Query: 61 ANLISISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDLEPLEHISGTSIA 120
NLISISQLCDQGYQVSFS
Sbjct: 225 VNLISISQLCDQGYQVSFS----------------------------------------- 284
Query: 121 KIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQT 180
LPTL+FNP +CC +C GKQVKSSHKST LP T LELLHI+LMGPMQT
Sbjct: 285 ----------LPTLSFNPQECCPDCLAGKQVKSSHKSTSLPFTLRTLELLHIDLMGPMQT 344
Query: 181 ESLGGK----------------------------------------------------RY 240
ESLGGK R
Sbjct: 345 ESLGGKREKNTGICRIRSDHGREFENKYFTEFCENEGIFLEFSAPLTPQQNGVVERKNRT 404
Query: 241 ALEMARVMIHAKHLPIYLWAEALNIACHIHNR-----------------------YFHIF 300
EMARVMIHAKHLP Y WAEALN ACHIHNR YF IF
Sbjct: 405 LQEMARVMIHAKHLPTYFWAEALNTACHIHNRVTLRPGTITTSYELWKGRKPNVKYFLIF 464
Query: 301 GSTCFILSDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVS 318
G+T FI SD++HHRKWDSKS+RGIFL VYN+RTRTVM+SVNVIIDDH K
Sbjct: 465 GNTYFIFSDKDHHRKWDSKSDRGIFLGYSTNSRAYIVYNQRTRTVMKSVNVIIDDHGK-- 524
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T4Y7 | 1.8e-112 | 65.54 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G0... | [more] |
| A0A5D3C9Q6 | 1.8e-83 | 42.98 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G... | [more] |
| A0A1S4E3G4 | 5.2e-83 | 60.86 | uncharacterized protein LOC107991705 OS=Cucumis melo OX=3656 GN=LOC107991705 PE=... | [more] |
| A0A5D3DVK5 | 2.4e-80 | 61.11 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold742G... | [more] |
| A0A5A7TGK3 | 9.2e-80 | 47.55 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0037898.1 | 3.8e-112 | 65.54 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0048721.1 | 3.7e-83 | 42.98 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07908.1 gag-pol polyprotein [... | [more] |
| XP_016902520.1 | 1.1e-82 | 60.86 | PREDICTED: uncharacterized protein LOC107991705 [Cucumis melo] | [more] |
| TYK27534.1 | 5.0e-80 | 61.11 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0041176.1 | 1.9e-79 | 47.55 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
