Pay0017139 (gene) Melon (Payzawat) v1

Overview
NamePay0017139
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag-pol polyprotein
Locationchr03: 3927569 .. 3930708 (-)
RNA-Seq ExpressionPay0017139
SyntenyPay0017139
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTGGACATGAGGTGTTGGAGAGCCATTATATCAGGGTGGGAGCATCTCACTGAAAAGGATGAAACCAGTAAAGTTACACGAAAGTCTTAACTAAAGTGGACAAGCGAAGAAGATGATGCAGCCGTGGGCAACTCACGTGCACTGAATGCACTATTCAATGTCGTTGATCCAAACATTTTTAAGCTAATCAACACCTGTAAGTCGGCTAAGGTCGCATGGGATACCCTAGAGGTAGCCTTTGAAGGAACGTCAAAGGTGAAAATCTCACGGTTGCAGATCCTGACATCTCATTTCGAAGCACTTCAAATGACTGAAGAAGAGACTATCGCTGAGTTCAATGTTCGAGTACTTGACATTACCAACGAATCAGATGTGCTAGAAGAAAAAATGTCTGATTCAAAACTAGTTTGGAAAGTCCTTAGATCTCTACCATCGAAGTTCAACATGAAAGTCACTACGATCGAGGAAGCCAATGACCTATCAAAAATGAAGCTGGATGAACTGTTCGGGTCATTGTGTACGTTCGAAATACACCTAGGAGACAGTGCAAGCAAGAGGAAACCTGGTCTTGCTCTAACCTCAGTAAAGGAAGAATCCACAAAGGAGTACAGAATATCTCAAAGTAACAACTCTCTAGCAGAATCTATGGCATTACTGACTAAGTAGGTTGCAAAACTCAAGAGTCAGTTTCACAAACACATTGGCAGTTAATGTAACAGCCGCGAAGCCACCTCAGCTACTCAACCTATAATATCAAGCTCTTCTTCATCTGGACTGTACCGAAGAAAGGACCACAAACGAAATGAAAAGGACAATGGCTCTTCAAAATTTGAGAAGTCTGGCAAATGAATCAGGTGTCATGAGTGTGAAGGATTTGGACACATTCAAACTAAATGTGCAACCTATCTCAAATGCAAGAAGAAGAGTCTGGTAGCCACCTTATCAGACGAAGAAGACTATTCTGAAAGTGATGATGAAGAAGTAGGATTAGCCTTGATCAGTATCACCACTATGAACAAAGAAGAAGCCGCACAAGTGACCTCCCAAGCATCAGACCAGCAGGAATCAATGATAGATGACTGTCTCAATGACAATATAGTGCAAAGGAAGTGGAAGGAAGATCAAGCAATCATCATACAACAACAAGAAAGGATACAATGCTTGATGGAAAAAATCAAAGCTTCTTGTCCTCAATAGTTACTCTAAAAGCTGAATTAAAGGAAGCCAAAAATCAATTTGAAGAACTAACCAAATCTGTAAAGATGTTGGCAAACGGGTCTAAAAAACTAGATGATTTAATTGGCCAAGGAAAGAGATACAATGACAAACGAGGTCTGGGTTTTATAGGAAGGAAAAGCACAAGGAATAGGACCACTGTGTTTGTACGAGAGTGTGACACTCAGAACAGTCAAACAGAAAATGCAAAAGGGAAGTACATAGTGGATGTGGTGAACAGACGAAAAACTTGTTATTTATATGGAAAGAAAAAAGGAAGTACACAGGGAAGTACACATTCGACCTTACTGCTTTCAACTGCAAAATCCCATGTATCATCAACATGCTCTCAGTCAAAGCATATATCTGAACGACGAAGGACAGAATGGCACCCAAAAATGAATTCGAAAAACTGCAAGGTGGCTCTTACTTCTGTTAATAATCTTAATTCTTCTGACTGGTACTTTGATAGTGGTTGTTCCAGGCATATGACGAGGAATGCCGCCTTCTTCTCAGAACTTAGCGAATGCAACGCAGGATCCGTGGTTTTTAGTGATGGAGAAAAAGGTAGAATCATTGGTAAAGGAACTATTGATCACCCTGGTTTGCCCTATCTGCTTGATGTTTGCTTGGTGCAGGGGTTGTCAGCAAATCTGATCAGCATTAGTCAATTGTGCGATCAAGGATATCAAGTCAGCTTTAGCAAAGACAGATGCAATGTGGTAGATAGTCAAAACAAAGTCTTTCTTAGCGGAACAAGGCTGTCTAACAACTGTTATCACTGGGATTTGGAGGTCAATTTATGCAACCTGTCAAAGGCGGAAGAGGCTGGTCTATGGCACAAGCCATTGGAACACATCAGTGGAACTTCCATTGCCAAAATTGCAAAGGTAGACACCACCATAGGCCTTCCCACTCTCACTTTTAATCCACATGATTGCTGCTCAAATTGTCCTGTTGGAAAGCAAGTCAAGTCATCCCATAAGTCCACCCGTCTGCCCTGTACTTCATGCATTCTGGAACTTCTCCATATAAATCTCATGGGGCCAATGCAAACAGAAAGTCTGGGGGGAAAAAGGTATGCTCTAGTATGTGTAGACAATTTTTCTTGCTATACCTGGGTGAAATTTATTTATGATAAATCTGAGGCTTTCAAAGTATGTCAAACTCTATTCTTACAAATTCAAAGAGAAAAGAATACAGGTATTTGTCACATACGAAGTGACCATGGCCGTGAGTTTGAAAATAAATATTTTACTGAGTTTTATGAGAATGAAGGAATTTTCCATGAGTTCTTAGCCCCACTAACACCTCAGCATAATGGAGTTGTTGAACGAAATAACAAAACGCTATAGGAAATGGCTCGGGTGATGATTCACGCAAAGCATCTGCCCATTTACTTATGGGCTGAAGCTCTAAATATTGCTTGTCACATACACAACCGGGTCAATCTTCGTCTTGGGACAATTACTACTCCATATGAACTCTGGAAAGGGAGAAAATCGAATGTGAAGTACTTTCACATTTTTGGTAGTACATGTTTTATTTTGAGTGACAGAGAGCATCATCGAAAGTGGGATTCAAAGTCTAATAGAGGAATATTTCTTGGCTACTCGACTAACAGCTGAGCCTACAGAGTCTATAATCGGCGTACTAGGACAGTTATGGAATCCGTTAATGTCATCATAGATGATCATGAGAAAGTCTCTATTGGAAGCATTGATGAAGAAGATGGAGATATTTGGGCTCCCTACTCCCAGAAAACTAAAACTTCGGTGTCTGAACTTTCTTTCCTAACCGACGATAAAGATAATTCATCTTCTCACACAAATGTTGACAGCATGGACATGTCTATCGAGCCTACATCAGTTGGTCACTTTGACACCAGTGCAAGTGAAGCATCAGTGTCTGCTTGTTAG

mRNA sequence

ATGTCTCTGGACATGAGGCATATGACGAGGAATGCCGCCTTCTTCTCAGAACTTAGCGAATGCAACGCAGGATCCGTGGTTTTTAGTGATGGAGAAAAAGCAAATCTGATCAGCATTAGTCAATTGTGCGATCAAGGATATCAAGTCAGCTTTAGCAAAGACAGATGCAATGTGGTAGATAGTCAAAACAAAGTCTTTCTTAGCGGAACAAGGCTGTCTAACAACTGTTATCACTGGGATTTGGAGCCATTGGAACACATCAGTGGAACTTCCATTGCCAAAATTGCAAAGGTAGACACCACCATAGGCCTTCCCACTCTCACTTTTAATCCACATGATTGCTGCTCAAATTGTCCTGTTGGAAAGCAAGTCAAGTCATCCCATAAGTCCACCCGTCTGCCCTGTACTTCATGCATTCTGGAACTTCTCCATATAAATCTCATGGGGCCAATGCAAACAGAAAGTCTGGGGGGAAAAAGGTATGCTCTAGAAATGGCTCGGGTGATGATTCACGCAAAGCATCTGCCCATTTACTTATGGGCTGAAGCTCTAAATATTGCTTGTCACATACACAACCGGTACTTTCACATTTTTGGTAGTACATGTTTTATTTTGAGTGACAGAGAGCATCATCGAAAGTGGGATTCAAAGTCTAATAGAGGAATATTTCTTGTCTATAATCGGCGTACTAGGACAGTTATGGAATCCGTTAATGTCATCATAGATGATCATGAGAAAGTCTCTATTGGAAGCATTGATGAAGAAGATGGAGATATTTGGGCTCCCTACTCCCAGAAAACTAAAACTTCGGTGTCTGAACTTTCTTTCCTAACCGACGATAAAGATAATTCATCTTCTCACACAAATGTTGACAGCATGGACATGTCTATCGAGCCTACATCAGTTGGTCACTTTGACACCAGTGCAAGTGAAGCATCAGTGTCTGCTTGTTAG

Coding sequence (CDS)

ATGTCTCTGGACATGAGGCATATGACGAGGAATGCCGCCTTCTTCTCAGAACTTAGCGAATGCAACGCAGGATCCGTGGTTTTTAGTGATGGAGAAAAAGCAAATCTGATCAGCATTAGTCAATTGTGCGATCAAGGATATCAAGTCAGCTTTAGCAAAGACAGATGCAATGTGGTAGATAGTCAAAACAAAGTCTTTCTTAGCGGAACAAGGCTGTCTAACAACTGTTATCACTGGGATTTGGAGCCATTGGAACACATCAGTGGAACTTCCATTGCCAAAATTGCAAAGGTAGACACCACCATAGGCCTTCCCACTCTCACTTTTAATCCACATGATTGCTGCTCAAATTGTCCTGTTGGAAAGCAAGTCAAGTCATCCCATAAGTCCACCCGTCTGCCCTGTACTTCATGCATTCTGGAACTTCTCCATATAAATCTCATGGGGCCAATGCAAACAGAAAGTCTGGGGGGAAAAAGGTATGCTCTAGAAATGGCTCGGGTGATGATTCACGCAAAGCATCTGCCCATTTACTTATGGGCTGAAGCTCTAAATATTGCTTGTCACATACACAACCGGTACTTTCACATTTTTGGTAGTACATGTTTTATTTTGAGTGACAGAGAGCATCATCGAAAGTGGGATTCAAAGTCTAATAGAGGAATATTTCTTGTCTATAATCGGCGTACTAGGACAGTTATGGAATCCGTTAATGTCATCATAGATGATCATGAGAAAGTCTCTATTGGAAGCATTGATGAAGAAGATGGAGATATTTGGGCTCCCTACTCCCAGAAAACTAAAACTTCGGTGTCTGAACTTTCTTTCCTAACCGACGATAAAGATAATTCATCTTCTCACACAAATGTTGACAGCATGGACATGTCTATCGAGCCTACATCAGTTGGTCACTTTGACACCAGTGCAAGTGAAGCATCAGTGTCTGCTTGTTAG

Protein sequence

MSLDMRHMTRNAAFFSELSECNAGSVVFSDGEKANLISISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDLEPLEHISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQTESLGGKRYALEMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGSTCFILSDREHHRKWDSKSNRGIFLVYNRRTRTVMESVNVIIDDHEKVSIGSIDEEDGDIWAPYSQKTKTSVSELSFLTDDKDNSSSHTNVDSMDMSIEPTSVGHFDTSASEASVSAC
Homology
BLAST of Pay0017139 vs. ExPASy TrEMBL
Match: A0A5A7T4Y7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00680 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.8e-112
Identity = 232/354 (65.54%), Postives = 248/354 (70.06%), Query Frame = 0

Query: 6   RHMTRNAAFFSELSECNAGSVVFSDGEK---------------------------ANLIS 65
           RHM  N AFFSELSECNAG +VF DG K                           ANLIS
Sbjct: 29  RHMIGNVAFFSELSECNAGFMVFGDGGKGRIIGKRTIDHPGLPYLIDVRLVQGLSANLIS 88

Query: 66  ISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDL----------------- 125
           ISQLCDQ YQVS SKDRCNVVDSQNKVFLSGTRLS+NCYHWD                  
Sbjct: 89  ISQLCDQRYQVSLSKDRCNVVDSQNKVFLSGTRLSDNCYHWDSKVNLCNLSKAEEGSLLH 148

Query: 126 EPLEHISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILE 185
           + L HISGTSIAK+AKVD  IGL TLTFNP +CCS+CPVGKQVKSSHKST LP T C LE
Sbjct: 149 KRLGHISGTSIAKVAKVDAIIGLLTLTFNPQECCSDCPVGKQVKSSHKSTCLPSTLCTLE 208

Query: 186 LLHINLMGPMQTESLGGKRYALEMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGST 245
           LLHI+LMGPMQTESLGGK+   EMARVMIHAKHLPIY WAEALN ACH HNR        
Sbjct: 209 LLHIDLMGPMQTESLGGKK---EMARVMIHAKHLPIYFWAEALNTACHKHNR-------- 268

Query: 246 CFILSDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVSIGS 305
                       WDSKS++GIFL          VYN RTRTVMES+NVIIDD EKVS GS
Sbjct: 269 ------------WDSKSHKGIFLGYSTNSQAYIVYNWRTRTVMESINVIIDDDEKVSNGS 328

BLAST of Pay0017139 vs. ExPASy TrEMBL
Match: A0A5D3C9Q6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00180 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.8e-83
Identity = 205/477 (42.98%), Postives = 237/477 (49.69%), Query Frame = 0

Query: 6   RHMTRNAAFFSELSECNAGSVVFSDGEK---------------------------ANLIS 65
           RHMT NA FFSELSEC AGSVVF DG K                           ANLIS
Sbjct: 82  RHMTGNADFFSELSECKAGSVVFEDGGKGKIIGKGTINRPGLPFLLDVRLVQGLSANLIS 141

Query: 66  ISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDLE---------------- 125
            SQLCDQGY+V+FSKDRCNV+D QNKVFLSGTRLS+NCYHWD E                
Sbjct: 142 TSQLCDQGYKVNFSKDRCNVLDGQNKVFLSGTRLSDNCYHWDAEVTLCNLSKVEEAGLWH 201

Query: 126 -PLEHISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILE 185
             L H+ G +I+K+ K +  IGLP L+F+  + CS CP GKQVKS HK   +  TS ILE
Sbjct: 202 KRLGHLGGATISKVIKANAIIGLPPLSFSSLESCSECPAGKQVKSVHKPVNISLTSHILE 261

Query: 186 LLHINLMGPMQTESLGGKRYAL-------------------------------------- 245
           LLHI+LM PMQTESLG KRYA+                                      
Sbjct: 262 LLHIDLMRPMQTESLGRKRYAVVCVDDFSRYTWIKFILEKLETFKTCQTLVTQLQREKNT 321

Query: 246 ---------------------------------------------------EMARVMIHA 305
                                                              EMARVMIHA
Sbjct: 322 GIGRIRTEHGCEFENKHFAEFCDNEGIFHEFSAQLTPQENGVVEKRNQTLQEMARVMIHA 381

Query: 306 KHLPIYLWAEALNIACHIHNR-----------------------YFHIFGSTCFILSDRE 317
           K LPI  WAEALN ACHIHNR                       YFHIFG TCFILSDR+
Sbjct: 382 KQLPIQFWAEALNTACHIHNRVILRPRTTTTSYELWKGRKPNVKYFHIFGGTCFILSDRD 441

BLAST of Pay0017139 vs. ExPASy TrEMBL
Match: A0A1S4E3G4 (uncharacterized protein LOC107991705 OS=Cucumis melo OX=3656 GN=LOC107991705 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 5.2e-83
Identity = 185/304 (60.86%), Postives = 203/304 (66.78%), Query Frame = 0

Query: 1   MSLDMRHMTRNAAFFSELSECNAGSVVFSDGEK---ANLISISQLCDQGYQVSFSKDRCN 60
           MSLDMRHMT N AFFSELSECNA S+V    EK   ANLI+I QLCDQGYQVSFSKDRCN
Sbjct: 33  MSLDMRHMTGNVAFFSELSECNAKSMVLVMEEKRLLANLINIIQLCDQGYQVSFSKDRCN 92

Query: 61  VVDSQNKVFLSG--------TRLSNNCY-----HWDLEPL--EHISGTSIAKIAKVDTTI 120
           VV  + K F +         TR+  + +        L+ L   +I+GTSIAK+AK D  I
Sbjct: 93  VVVVKTKSFSAKQDCLTTVITRIQRSIFVICQRRRKLKSLGRYNINGTSIAKVAKDDAII 152

Query: 121 GLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQTESLGGKRYA 180
           GLPTLTFNP +CCS+CP GKQVKSS KST LP TS  LELL I+LM PMQT SLG ++  
Sbjct: 153 GLPTLTFNPQECCSDCPTGKQVKSSDKSTSLPSTSRTLELLRIDLMRPMQTNSLGARKKG 212

Query: 181 L-----------------EMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGSTCFIL 240
           L                 E ARVMIHAKHLPIY W EALN  CHIHNRY         IL
Sbjct: 213 LLTPQQNDVVERKNRTLQEKARVMIHAKHLPIYFWVEALNTVCHIHNRYM-------LIL 272

Query: 241 SDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVSIGSIDEE 260
           SDREHHRKWDSKS+RGIFL          VYNR  R VMESVNVIIDDHEKVS GS+DEE
Sbjct: 273 SDREHHRKWDSKSDRGIFLGYSTNSRAYRVYNRHMRIVMESVNVIIDDHEKVSNGSVDEE 329

BLAST of Pay0017139 vs. ExPASy TrEMBL
Match: A0A5D3DVK5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold742G00060 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 2.4e-80
Identity = 176/288 (61.11%), Postives = 194/288 (67.36%), Query Frame = 0

Query: 7   HMTRNAAFFSELSECNAGSVVFSDGEK---ANLISISQLCDQGYQVSFSKDRCNVVDSQN 66
           HMT N AFFSELSECNA S+V    EK   ANLI+I QLCDQGYQVSFSKDRCNVV  + 
Sbjct: 78  HMTGNVAFFSELSECNAKSMVLVMEEKRLLANLINIIQLCDQGYQVSFSKDRCNVVVVKT 137

Query: 67  KVFLSGTRLSNNCYHWDLEPLE-----HISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNC 126
           K F +      +C    +  ++     +I+GTSIAK+AK D  IGLPTLTFNP +CCS+C
Sbjct: 138 KSFSA----KQDCLTTVITRIQSLGRYNINGTSIAKVAKDDAIIGLPTLTFNPQECCSDC 197

Query: 127 PVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQTESLGGKRYAL--------------- 186
           P GKQVKSS KST LP TS  LELL I+LM PMQT SLG ++  L               
Sbjct: 198 PTGKQVKSSDKSTSLPSTSRTLELLRIDLMRPMQTNSLGARKKGLLTPQQNDVVERKNRT 257

Query: 187 --EMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGSTCFILSDREHHRKWDSKSNRG 246
             E ARVMIHAKHLPIY W EALN  CHIHNRY         ILSDREHHRKWDSKS+RG
Sbjct: 258 LQEKARVMIHAKHLPIYFWVEALNTVCHIHNRYM-------LILSDREHHRKWDSKSDRG 317

Query: 247 IFL----------VYNRRTRTVMESVNVIIDDHEKVSIGSIDEEDGDI 260
           IFL          VYNR  R VMESVNVIIDDHEKVS GS+DEEDGDI
Sbjct: 318 IFLGYSTNSRAYRVYNRHMRIVMESVNVIIDDHEKVSNGSVDEEDGDI 354

BLAST of Pay0017139 vs. ExPASy TrEMBL
Match: A0A5A7TGK3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001130 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 9.2e-80
Identity = 204/429 (47.55%), Postives = 218/429 (50.82%), Query Frame = 0

Query: 1   MSLDMRHMTRNAAFFSELSECNAGSVVFSDGEK--------------------------- 60
           MS   RHM  N AFF ELSECNAG VVF DG K                           
Sbjct: 165 MSGCSRHMIGNVAFFLELSECNAGFVVFGDGGKGKIIGKGTIDHPRLPYLLDVRLVQGLS 224

Query: 61  ANLISISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDLEPLEHISGTSIA 120
            NLISISQLCDQGYQVSFS                                         
Sbjct: 225 VNLISISQLCDQGYQVSFS----------------------------------------- 284

Query: 121 KIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQT 180
                     LPTL+FNP +CC +C  GKQVKSSHKST LP T   LELLHI+LMGPMQT
Sbjct: 285 ----------LPTLSFNPQECCPDCLAGKQVKSSHKSTSLPFTLRTLELLHIDLMGPMQT 344

Query: 181 ESLGGK----------------------------------------------------RY 240
           ESLGGK                                                    R 
Sbjct: 345 ESLGGKREKNTGICRIRSDHGREFENKYFTEFCENEGIFLEFSAPLTPQQNGVVERKNRT 404

Query: 241 ALEMARVMIHAKHLPIYLWAEALNIACHIHNR-----------------------YFHIF 300
             EMARVMIHAKHLP Y WAEALN ACHIHNR                       YF IF
Sbjct: 405 LQEMARVMIHAKHLPTYFWAEALNTACHIHNRVTLRPGTITTSYELWKGRKPNVKYFLIF 464

Query: 301 GSTCFILSDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVS 318
           G+T FI SD++HHRKWDSKS+RGIFL          VYN+RTRTVM+SVNVIIDDH K  
Sbjct: 465 GNTYFIFSDKDHHRKWDSKSDRGIFLGYSTNSRAYIVYNQRTRTVMKSVNVIIDDHGK-- 524

BLAST of Pay0017139 vs. NCBI nr
Match: KAA0037898.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 415.6 bits (1067), Expect = 3.8e-112
Identity = 232/354 (65.54%), Postives = 248/354 (70.06%), Query Frame = 0

Query: 6   RHMTRNAAFFSELSECNAGSVVFSDGEK---------------------------ANLIS 65
           RHM  N AFFSELSECNAG +VF DG K                           ANLIS
Sbjct: 29  RHMIGNVAFFSELSECNAGFMVFGDGGKGRIIGKRTIDHPGLPYLIDVRLVQGLSANLIS 88

Query: 66  ISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDL----------------- 125
           ISQLCDQ YQVS SKDRCNVVDSQNKVFLSGTRLS+NCYHWD                  
Sbjct: 89  ISQLCDQRYQVSLSKDRCNVVDSQNKVFLSGTRLSDNCYHWDSKVNLCNLSKAEEGSLLH 148

Query: 126 EPLEHISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILE 185
           + L HISGTSIAK+AKVD  IGL TLTFNP +CCS+CPVGKQVKSSHKST LP T C LE
Sbjct: 149 KRLGHISGTSIAKVAKVDAIIGLLTLTFNPQECCSDCPVGKQVKSSHKSTCLPSTLCTLE 208

Query: 186 LLHINLMGPMQTESLGGKRYALEMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGST 245
           LLHI+LMGPMQTESLGGK+   EMARVMIHAKHLPIY WAEALN ACH HNR        
Sbjct: 209 LLHIDLMGPMQTESLGGKK---EMARVMIHAKHLPIYFWAEALNTACHKHNR-------- 268

Query: 246 CFILSDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVSIGS 305
                       WDSKS++GIFL          VYN RTRTVMES+NVIIDD EKVS GS
Sbjct: 269 ------------WDSKSHKGIFLGYSTNSQAYIVYNWRTRTVMESINVIIDDDEKVSNGS 328

BLAST of Pay0017139 vs. NCBI nr
Match: KAA0048721.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07908.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 3.7e-83
Identity = 205/477 (42.98%), Postives = 237/477 (49.69%), Query Frame = 0

Query: 6   RHMTRNAAFFSELSECNAGSVVFSDGEK---------------------------ANLIS 65
           RHMT NA FFSELSEC AGSVVF DG K                           ANLIS
Sbjct: 82  RHMTGNADFFSELSECKAGSVVFEDGGKGKIIGKGTINRPGLPFLLDVRLVQGLSANLIS 141

Query: 66  ISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDLE---------------- 125
            SQLCDQGY+V+FSKDRCNV+D QNKVFLSGTRLS+NCYHWD E                
Sbjct: 142 TSQLCDQGYKVNFSKDRCNVLDGQNKVFLSGTRLSDNCYHWDAEVTLCNLSKVEEAGLWH 201

Query: 126 -PLEHISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILE 185
             L H+ G +I+K+ K +  IGLP L+F+  + CS CP GKQVKS HK   +  TS ILE
Sbjct: 202 KRLGHLGGATISKVIKANAIIGLPPLSFSSLESCSECPAGKQVKSVHKPVNISLTSHILE 261

Query: 186 LLHINLMGPMQTESLGGKRYAL-------------------------------------- 245
           LLHI+LM PMQTESLG KRYA+                                      
Sbjct: 262 LLHIDLMRPMQTESLGRKRYAVVCVDDFSRYTWIKFILEKLETFKTCQTLVTQLQREKNT 321

Query: 246 ---------------------------------------------------EMARVMIHA 305
                                                              EMARVMIHA
Sbjct: 322 GIGRIRTEHGCEFENKHFAEFCDNEGIFHEFSAQLTPQENGVVEKRNQTLQEMARVMIHA 381

Query: 306 KHLPIYLWAEALNIACHIHNR-----------------------YFHIFGSTCFILSDRE 317
           K LPI  WAEALN ACHIHNR                       YFHIFG TCFILSDR+
Sbjct: 382 KQLPIQFWAEALNTACHIHNRVILRPRTTTTSYELWKGRKPNVKYFHIFGGTCFILSDRD 441

BLAST of Pay0017139 vs. NCBI nr
Match: XP_016902520.1 (PREDICTED: uncharacterized protein LOC107991705 [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 1.1e-82
Identity = 185/304 (60.86%), Postives = 203/304 (66.78%), Query Frame = 0

Query: 1   MSLDMRHMTRNAAFFSELSECNAGSVVFSDGEK---ANLISISQLCDQGYQVSFSKDRCN 60
           MSLDMRHMT N AFFSELSECNA S+V    EK   ANLI+I QLCDQGYQVSFSKDRCN
Sbjct: 33  MSLDMRHMTGNVAFFSELSECNAKSMVLVMEEKRLLANLINIIQLCDQGYQVSFSKDRCN 92

Query: 61  VVDSQNKVFLSG--------TRLSNNCY-----HWDLEPL--EHISGTSIAKIAKVDTTI 120
           VV  + K F +         TR+  + +        L+ L   +I+GTSIAK+AK D  I
Sbjct: 93  VVVVKTKSFSAKQDCLTTVITRIQRSIFVICQRRRKLKSLGRYNINGTSIAKVAKDDAII 152

Query: 121 GLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQTESLGGKRYA 180
           GLPTLTFNP +CCS+CP GKQVKSS KST LP TS  LELL I+LM PMQT SLG ++  
Sbjct: 153 GLPTLTFNPQECCSDCPTGKQVKSSDKSTSLPSTSRTLELLRIDLMRPMQTNSLGARKKG 212

Query: 181 L-----------------EMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGSTCFIL 240
           L                 E ARVMIHAKHLPIY W EALN  CHIHNRY         IL
Sbjct: 213 LLTPQQNDVVERKNRTLQEKARVMIHAKHLPIYFWVEALNTVCHIHNRYM-------LIL 272

Query: 241 SDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVSIGSIDEE 260
           SDREHHRKWDSKS+RGIFL          VYNR  R VMESVNVIIDDHEKVS GS+DEE
Sbjct: 273 SDREHHRKWDSKSDRGIFLGYSTNSRAYRVYNRHMRIVMESVNVIIDDHEKVSNGSVDEE 329

BLAST of Pay0017139 vs. NCBI nr
Match: TYK27534.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 308.9 bits (790), Expect = 5.0e-80
Identity = 176/288 (61.11%), Postives = 194/288 (67.36%), Query Frame = 0

Query: 7   HMTRNAAFFSELSECNAGSVVFSDGEK---ANLISISQLCDQGYQVSFSKDRCNVVDSQN 66
           HMT N AFFSELSECNA S+V    EK   ANLI+I QLCDQGYQVSFSKDRCNVV  + 
Sbjct: 78  HMTGNVAFFSELSECNAKSMVLVMEEKRLLANLINIIQLCDQGYQVSFSKDRCNVVVVKT 137

Query: 67  KVFLSGTRLSNNCYHWDLEPLE-----HISGTSIAKIAKVDTTIGLPTLTFNPHDCCSNC 126
           K F +      +C    +  ++     +I+GTSIAK+AK D  IGLPTLTFNP +CCS+C
Sbjct: 138 KSFSA----KQDCLTTVITRIQSLGRYNINGTSIAKVAKDDAIIGLPTLTFNPQECCSDC 197

Query: 127 PVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQTESLGGKRYAL--------------- 186
           P GKQVKSS KST LP TS  LELL I+LM PMQT SLG ++  L               
Sbjct: 198 PTGKQVKSSDKSTSLPSTSRTLELLRIDLMRPMQTNSLGARKKGLLTPQQNDVVERKNRT 257

Query: 187 --EMARVMIHAKHLPIYLWAEALNIACHIHNRYFHIFGSTCFILSDREHHRKWDSKSNRG 246
             E ARVMIHAKHLPIY W EALN  CHIHNRY         ILSDREHHRKWDSKS+RG
Sbjct: 258 LQEKARVMIHAKHLPIYFWVEALNTVCHIHNRYM-------LILSDREHHRKWDSKSDRG 317

Query: 247 IFL----------VYNRRTRTVMESVNVIIDDHEKVSIGSIDEEDGDI 260
           IFL          VYNR  R VMESVNVIIDDHEKVS GS+DEEDGDI
Sbjct: 318 IFLGYSTNSRAYRVYNRHMRIVMESVNVIIDDHEKVSNGSVDEEDGDI 354

BLAST of Pay0017139 vs. NCBI nr
Match: KAA0041176.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 307.0 bits (785), Expect = 1.9e-79
Identity = 204/429 (47.55%), Postives = 218/429 (50.82%), Query Frame = 0

Query: 1   MSLDMRHMTRNAAFFSELSECNAGSVVFSDGEK--------------------------- 60
           MS   RHM  N AFF ELSECNAG VVF DG K                           
Sbjct: 165 MSGCSRHMIGNVAFFLELSECNAGFVVFGDGGKGKIIGKGTIDHPRLPYLLDVRLVQGLS 224

Query: 61  ANLISISQLCDQGYQVSFSKDRCNVVDSQNKVFLSGTRLSNNCYHWDLEPLEHISGTSIA 120
            NLISISQLCDQGYQVSFS                                         
Sbjct: 225 VNLISISQLCDQGYQVSFS----------------------------------------- 284

Query: 121 KIAKVDTTIGLPTLTFNPHDCCSNCPVGKQVKSSHKSTRLPCTSCILELLHINLMGPMQT 180
                     LPTL+FNP +CC +C  GKQVKSSHKST LP T   LELLHI+LMGPMQT
Sbjct: 285 ----------LPTLSFNPQECCPDCLAGKQVKSSHKSTSLPFTLRTLELLHIDLMGPMQT 344

Query: 181 ESLGGK----------------------------------------------------RY 240
           ESLGGK                                                    R 
Sbjct: 345 ESLGGKREKNTGICRIRSDHGREFENKYFTEFCENEGIFLEFSAPLTPQQNGVVERKNRT 404

Query: 241 ALEMARVMIHAKHLPIYLWAEALNIACHIHNR-----------------------YFHIF 300
             EMARVMIHAKHLP Y WAEALN ACHIHNR                       YF IF
Sbjct: 405 LQEMARVMIHAKHLPTYFWAEALNTACHIHNRVTLRPGTITTSYELWKGRKPNVKYFLIF 464

Query: 301 GSTCFILSDREHHRKWDSKSNRGIFL----------VYNRRTRTVMESVNVIIDDHEKVS 318
           G+T FI SD++HHRKWDSKS+RGIFL          VYN+RTRTVM+SVNVIIDDH K  
Sbjct: 465 GNTYFIFSDKDHHRKWDSKSDRGIFLGYSTNSRAYIVYNQRTRTVMKSVNVIIDDHGK-- 524

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T4Y71.8e-11265.54Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G0... [more]
A0A5D3C9Q61.8e-8342.98Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G... [more]
A0A1S4E3G45.2e-8360.86uncharacterized protein LOC107991705 OS=Cucumis melo OX=3656 GN=LOC107991705 PE=... [more]
A0A5D3DVK52.4e-8061.11Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold742G... [more]
A0A5A7TGK39.2e-8047.55Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G... [more]
Match NameE-valueIdentityDescription
KAA0037898.13.8e-11265.54gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0048721.13.7e-8342.98gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07908.1 gag-pol polyprotein [... [more]
XP_016902520.11.1e-8260.86PREDICTED: uncharacterized protein LOC107991705 [Cucumis melo][more]
TYK27534.15.0e-8061.11gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0041176.11.9e-7947.55gag-pol polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..317

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0017139.1Pay0017139.1mRNA