Pay0016897 (gene) Melon (Payzawat) v1

Overview


Name	Pay0016897
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	protein RETICULATA-RELATED 4, chloroplastic-like
Location	chr11: 12629557 .. 12631352 (+)
RNA-Seq Expression	Pay0016897
Synteny	Pay0016897

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATCCCAAACTCACCCATCCAAAATGCCGCCGATGCCTCCCCTGCTCACCCATCCCAAACGTCGCCGAACGCCAAACGCTAACTTCCATCCGAATGCCGAACGCCTAACGCGAACGCTGCTCCCCTGCTCCCTTGCTCGTCGAATGCCTAACGCGAACGCGAACGCTGCTCCCTTTCTCTTTTGCTATCTTTGTTGTTTGTTAGGTTTCTAGATTTGATTACTTTTGTTGGTTCCTTTTTGTTACGTATCAGGTTCTTAGACAAATTGAAAATAGCTGGCTAAGGGAAAGGAGAAATGAGATTGACCTTCACCAAGCTTTTCAGTAGGCTTTTTGCAAAGAAGGAGATGCAGATTTTGATGGTTGGTCTTGATGCTGCTGGAAAGACCACGATCTTGTACAAGCTCAAGCTCGGAGAAATTGTCACAACTATTCCTACAATGGGTGCGTTCTTTGATTACTAACCCCCTTTTCATGAAATGTCGAGTTTTGATTTCTTAATTTGTATTATTGTTATTCATTTATGAACTTCCTTCTTCAGGTGGCGTTGGCGAGTACCTCCTTTTCGTTTCTTCAGAGAGTTGGTGCTGTGGTGGTATGTGGTGTGTGTTTAGAGCTGAATTTCTTCACTAATTTGAATGTTTTACTTAATTTAAACGTGATTTCTTTTGTTTATTTGTAGCGTAATGGGGCCAAGCTATTTACTGTAGAGAGTGGTGCATTTATGGTAAGCTAGTTGTTCACATTAGATCTAATAAGTACCTTGTGGTCAGAATTAAGAAATTCGGTTATTGACAATCAGATTGCTCTAGGATCTATAATTGCATCAAAGGTGCATTACTCATTATTTGACTTTTGAATAATATTCCAGTATCCCGTTGAATGTGGAAGGATAAGTTGGCAACGGATTTCACGAAATCTTGGCAATCTTCCTACTAATGAATGGGAGTCGCTTTGAAATCGTCCGCCTGCACCACCCTCCAGTATATGCTTCACAGAATTAAGACAAGGGGTAGATTGATACCACAATAGAAGCGCTCTGGTCAAATGCCCACTTGTACCCAGGATCATAAAGTACACTATATAGTTCATTTTAGGGATTGACGACTTACCTACTTGGTGACTTTGGCACCGGACGTTCAGAAATGGGGTACTATCGGGTCGGGTGAATTCAATAAGGCCTGTTGGCATTCCAGCCTTCCTTCTCCTTTCAGGGCCTACCCGAAAGAGAATCCAGTCTTTCTTGGTCGTGAATATCTGAATAGGACGATATGCCCCGTGGTTGCTTCGGAACAAAACATAGAATTAGGCTCGTTGAATTGGAATGTGGCTTATCCATATAAGGGATCTTTTCATTGGACGAATGGTCAATCGACTATGAGAAGAGAGGGGTCTATTTCTGAATTTAATTAGTTATTCAGTTTAAACCAATGATTGTTATTTGTAACAGAAGGCACAACCATTCAGAAAGATTGAGAAATAGAAGCATCTGATTTGATTCTTCTCACATAGCCATTGTGATGATCATCTTGGGTGATCTTTTTATCGACGGATGCTCTATTACACTCGCAGTCTCTGAAGATGAGAACCAACTATGTAGCTTACATCGAGAATTCAAGTATTGTATATCGGTCATTAGTCTGATCCTTTGTAGGACTACCATAATAACGAATTGCAAATGATTGTTTATCTAAAGAGATTCGTTGTTCCTGACCCTGGCTTCACCTTAATTGTTATTTGAAGCAGGTTAAAAGGTTATGTCTTGGGTCTTAGTGGGGATAGTTTTCTCTTACTGA

mRNA sequence

CGATCCCAAACTCACCCATCCAAAATGCCGCCGATGCCTCCCCTGCTCACCCATCCCAAACGTCGCCGAACGCCAAACGCTAACTTCCATCCGAATGCCGAACGCCTAACGCGAACGCTGCTCCCCTGCTCCCTTGCTCGTCGAATGCCTAACGCGAACGCGAACGCTGCTCCCTTTCTCTTTTGCTATCTTTGTTGTTTGTTAGGTTTCTAGATTTGATTACTTTTGTTGGTTCCTTTTTGTTACGTATCAGGTTCTTAGACAAATTGAAAATAGCTGGCTAAGGGAAAGGAGAAATGAGATTGACCTTCACCAAGCTTTTCAGTAGGCTTTTTGCAAAGAAGGAGATGCAGATTTTGATGGTTGGTCTTGATGCTGCTGGAAAGACCACGATCTTGTACAAGCTCAAGCTCGGAGAAATTGTCACAACTATTCCTACAATGGGTGGCGTTGGCGAGTACCTCCTTTTCGTTTCTTCAGAGAGTTGGTGCTGTGGTGCGTAATGGGGCCAAGCTATTTACTGTAGAGAGTGGTGCATTTATGGTTATGTCTTGGGTCTTAGTGGGGATAGTTTTCTCTTACTGA

Coding sequence (CDS)

ATGCTGCTGGAAAGACCACGATCTTGTACAAGCTCAAGCTCGGAGAAATTGTCACAACTATTCCTACAATGGGTGGCGTTGGCGAGTACCTCCTTTTCGTTTCTTCAGAGAGTTGGTGCTGTGGTGCGTAATGGGGCCAAGCTATTTACTGTAGAGAGTGGTGCATTTATGGTTATGTCTTGGGTCTTAGTGGGGATAGTTTTCTCTTACTGA

Protein sequence

MLLERPRSCTSSSSEKLSQLFLQWVALASTSFSFLQRVGAVVRNGAKLFTVESGAFMVMSWVLVGIVFSY

Homology

[Close]

BLAST of Pay0016897 vs. ExPASy TrEMBL
Match: A0A1S4E4N7 (protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103502252 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MLLERPRSCTSSSSEKLSQLFLQWVALASTSFSFLQRVGAVVRNGAKLFTVESGAFMV 59
          MLLERPRSCTSSSSEKLSQLFLQWVALA TSFSFLQRVGAVVRNG KLF V SGA +V
Sbjct: 1  MLLERPRSCTSSSSEKLSQLFLQWVALAGTSFSFLQRVGAVVRNGGKLFAVGSGASVV 58

[Close]

BLAST of Pay0016897 vs. ExPASy TrEMBL
Match: A0A5A7TXM9 (Protein RETICULATA-RELATED 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001130 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 25  VALASTSFSFLQRVGAVVRNGAKLFTVESGAFMV 59
           VALA TSFSFLQRVGAVVRNGAKLF V SGA +V
Sbjct: 246 VALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVV 279

[Close]

BLAST of Pay0016897 vs. ExPASy TrEMBL
Match: A0A5D3BJ78 (Protein RETICULATA-RELATED 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00120 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 25  VALASTSFSFLQRVGAVVRNGAKLFTVESGAFMV 59
           VALA TSFSFLQRVGAVVRNGAKLF V SGA +V
Sbjct: 223 VALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVV 256

[Close]

BLAST of Pay0016897 vs. ExPASy TrEMBL
Match: A0A0A0LCC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G686720 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 25  VALASTSFSFLQRVGAVVRNGAKLFTVESGAFMV 59
           VALA TSFSFLQRVGAVVRNGAKLF V SGA +V
Sbjct: 246 VALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVV 279

[Close]

BLAST of Pay0016897 vs. ExPASy TrEMBL
Match: A0A1S3CG26 (protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500333 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 25  VALASTSFSFLQRVGAVVRNGAKLFTVESGAFMV 59
           VALA TSFSFLQRVGAVVRNGAKLF V SGA +V
Sbjct: 246 VALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVV 279

[Close]

BLAST of Pay0016897 vs. NCBI nr
Match: XP_016903189.1 (PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 3.9e-17
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MLLERPRSCTSSSSEKLSQLFLQWVALASTSFSFLQRVGAVVRNGAKLFTVESGAFMV 59
          MLLERPRSCTSSSSEKLSQLFLQWVALA TSFSFLQRVGAVVRNG KLF V SGA +V
Sbjct: 1  MLLERPRSCTSSSSEKLSQLFLQWVALAGTSFSFLQRVGAVVRNGGKLFAVGSGASVV 58

[Close]

BLAST of Pay0016897 vs. NCBI nr
Match: XP_008461823.1 (PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Cucumis melo] >KAA0048393.1 protein RETICULATA-RELATED 4 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 25  VALASTSFSFLQRVGAVVRNGAKLFTVESGAFMV 59
           VALA TSFSFLQRVGAVVRNGAKLF V SGA +V
Sbjct: 246 VALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVV 279

[Close]

BLAST of Pay0016897 vs. NCBI nr
Match: TYJ99870.1 (protein RETICULATA-RELATED 4 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 25  VALASTSFSFLQRVGAVVRNGAKLFTVESGAFMV 59
           VALA TSFSFLQRVGAVVRNGAKLF V SGA +V
Sbjct: 223 VALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVV 256

[Close]

BLAST of Pay0016897 vs. NCBI nr
Match: XP_004149738.1 (protein RETICULATA-RELATED 4, chloroplastic [Cucumis sativus] >KGN58569.1 hypothetical protein Csa_001009 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 25  VALASTSFSFLQRVGAVVRNGAKLFTVESGAFMV 59
           VALA TSFSFLQRVGAVVRNGAKLF V SGA +V
Sbjct: 246 VALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVV 279

[Close]

BLAST of Pay0016897 vs. TAIR 10
Match: AT5G12470.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 40.4 bits (93), Expect = 6.8e-04
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 25  VALASTSFSFLQRVGAVVRNGAKLFTVESGAFMV 59
           VAL+ TS++ LQR+GA+ RNGAKLF V + + +V
Sbjct: 251 VALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLV 284

The following BLAST results are available for this feature:

BLAST of Pay0016897 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0016897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E4N7	1.9e-17	89.66	protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TXM9	2.4e-04	85.29	Protein RETICULATA-RELATED 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BJ78	2.4e-04	85.29	Protein RETICULATA-RELATED 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0LCC3	2.4e-04	85.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G686720 PE=3 SV=1	[more]
A0A1S3CG26	2.4e-04	85.29	protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Pay0016897 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903189.1	3.9e-17	89.66	PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Cucumis melo]	[more]
XP_008461823.1	4.9e-04	85.29	PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Cucumis melo] >KAA0...	[more]
TYJ99870.1	4.9e-04	85.29	protein RETICULATA-RELATED 4 [Cucumis melo var. makuwa]	[more]
XP_004149738.1	4.9e-04	85.29	protein RETICULATA-RELATED 4, chloroplastic [Cucumis sativus] >KGN58569.1 hypoth...	[more]

BLAST of Pay0016897 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12470.1	6.8e-04	55.88	Protein of unknown function (DUF3411)	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0016897.1	Pay0016897.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031969	chloroplast membrane