Pay0016817 (gene) Melon (Payzawat) v1

Overview
NamePay0016817
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionAspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B
Locationchr05: 5592541 .. 5594904 (+)
RNA-Seq ExpressionPay0016817
SyntenyPay0016817
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCGGCTGCGAGCTACGACGAAGGTGAGTACAAAGTTATCTTTCTTTTTTCCGGCCGTCCTCCTCGGTTTGTTCTTTGGTTTTACTGTTTTATGGGTGTGCCCCAGTTTGTCGATTCTCTCTTTTCTTGTTGTCGTGAATATTCAGAATGGCGAAGAAAAGAATCCATACGCCCATTTACAAGTAACCACTGTTTGTGCTGTCTGCCAGAAAAATTCAAGTATTCAGTACCATTCTCTTTTTGGGTTCTGTTTTCTTTCTCATTCCAGTGAGAATCCAGCGTTTTCTTGGAGAATTTTACTCTATTCAACTGTTTTCTCGTGCTTTGTTTCTTCTATCTGGAAATTTAGCTGTTGTTTCAATTAATTAGATTCGGAAGGAATTTGATATGAATGGATTCAGAATTGTGTGCCAATTATAGTTCATATACATGTAGTGATGAGAATTTTGGCATTGGGTTAGGGTTTTTGAAAGTTTGATTTTTGTCGGTTGCCTTTGGGTCTGTGGTGTATGCTTGTAGGCTGTATGAATTCAAGTTATTTGTATTCTGTTTCTGTTTGGTTAATCACTCCCCTCCAACACATTTTTGTATTCTGAATCATCTGCCTTTTGTTGTGGTTCATAATTCATATCTGTCAAGTTATGGAATGGAAGGCAAGCTAGTTTTGAGGACTCCATCTGACTAGTTACATGTTTGTTTGACAATTGTTGAAATGTATTGCAGGCGTTGTCCTTTTCTTGATAATTGGCTATTTTCCATCTGAACATCTCTTGAATTGAGATGTACTTCAGTCTGCACACTTCATGAGTTTGTGTTATTTCTGTACTCCATTGTTTATGATTGCCTTTGTATGTTGGTAAAATTTTATTTTTACTTTTAGTCCAATCTTGTGAACATTAAATATCTTGCTGATGTAGTTGGTTTTGCTCTTAGTCTGCTATTTAATATTTTGCTCTTTCCAAAATCACCAACTTCAAATGTCAAGTCAAGTGTCAGGCCTGGGCTGATGTGAATTCTTCTTTTTCTTTATACACATACGTGCAAGCCTTTCATGTTATTTTGTTGTCATGCTACTAGTTGCTATTACTATGAATGACTGGCAAGAGAGTTTGATTCCGTGCCTTGGCTTGAATGTTCGTCCATGCCAGTGCATGGATATATCATATATGTATGTGATAACTTCACGATTCTTTGCTCTTTCAGATGCGTGGTGTCATTTTTAAAGTATTTTTATTCTAACCATCATTAGTGTGCACAGCTTATCAAATTATTGAGAACCTTCATCATACGAATATGTAAAGAAACAATAATCATGAGTTGGCGTTATGGTAAATAGGGAATATGACATTGATAAAGGGCTAAAAAAGGTCATGGATTCAATTCATGGTGGCTAACTACCTATCTAGGATTTAATATCCTACAAATTTTGTTGACGTCCAAATGTTATAGGTTCAAGTGGATAGTCTCACGAGATTAATCGAGGCATGTGTAAGTTGGCATGGACATTCATGGTTCTTAAAAGATTGAAACATGTAAAAAAACCTTTGTTTTGAGAATCTATCGTCTTTGCTATAGGCTAATCTTTTACCTTATCTGTTATTTCCTAATTGTTTGCAGAGACTTTGCTTTGATATGAGTTTTGTGTTTTCAGCTTCTTTGGCTAACCCTACATGGGAAACAGACCCGTGAAGCAACCACAGGAAGAAGTTTTCTTGAAGATAGTACCTCCTTTGGACCAAACATATGTTAGATGGCTAGCTCGTGATCTCGAGAGGATTCATGGCTTCACCCCGAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAG

mRNA sequence

ATCCGGCTGCGAGCTACGACGAAGGCGTTGTCCTTTTCTTGATAATTGGCTATTTTCCATCTGAACATCTCTTGAATTGAGATGTACTTCAGTCTGCACACTTCATGAGTTTGTGTTATTTCTGTACTCCATTGTTTATGATTGCCTTTGTATGTTGGTAAAATTTTATTTTTACTTTTAGTCCAATCTTGTGAACATTAAATATCTTGCTGATGTAGTTGGTTTTGCTCTTAGTCTGCTATTTAATATTTTGCTCTTTCCAAAATCACCAACTTCAAATGTCAAGTCAAGTGTCAGGCCTGGGCTGATGTGAATTCTTCTTTTTCTTTATACACATACGTGCAAGCCTTTCATGTTATTTTGTTGTCATGCTACTAGTTGCTATTACTATGAATGACTGGCAAGAGAGTTTGATTCCGTGCCTTGGCTTGAATGTTCGTCCATGCCAGTGCATGGATATATCATATATGTATGTGATAACTTCACGATTCTTTGCTCTTTCAGATGCGTGGTGTCATTTTTAAAGTATTTTTATTCTAACCATCATTAGTGTGCACAGCTTATCAAATTATTGAGAACCTTCATCATACGAATATGTAAAGAAACAATAATCATGAGTTGGCGTTATGGTAAATAGGGAATATGACATTGATAAAGGGCTAAAAAAGGTCATGGATTCAATTCATGGTGGCTAACTACCTATCTAGGATTTAATATCCTACAAATTTTGTTGACGTCCAAATGTTATAGGTTCAAGTGGATAGTCTCACGAGATTAATCGAGGCATGTGTAAGTTGGCATGGACATTCATGGTTCTTAAAAGATTGAAACATGTAAAAAAACCTTTGTTTTGAGAATCTATCGTCTTTGCTATAGGCTAATCTTTTACCTTATCTGTTATTTCCTAATTGTTTGCAGAGACTTTGCTTTGATATGAGTTTTGTGTTTTCAGCTTCTTTGGCTAACCCTACATGGGAAACAGACCCGTGAAGCAACCACAGGAAGAAGTTTTCTTGAAGATAGTACCTCCTTTGGACCAAACATATGTTAGATGGCTAGCTCGTGATCTCGAGAGGATTCATGGCTTCACCCCGAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAG

Coding sequence (CDS)

ATGGGAAACAGACCCGTGAAGCAACCACAGGAAGAAGTTTTCTTGAAGATAGTACCTCCTTTGGACCAAACATATGTTAGATGGCTAGCTCGTGATCTCGAGAGGATTCATGGCTTCACCCCGAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAG

Protein sequence

MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLARLLK
Homology
[Close]
BLAST of Pay0016817 vs. ExPASy TrEMBL
Match: A0A5A7V7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001040 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.3e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60
          MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]
BLAST of Pay0016817 vs. ExPASy TrEMBL
Match: A0A1S4DYB2 (uncharacterized protein LOC103491432 OS=Cucumis melo OX=3656 GN=LOC103491432 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-37
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60
          MGN+PVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFT RNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]
BLAST of Pay0016817 vs. ExPASy TrEMBL
Match: A0A5D3BAZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00250 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-37
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60
          MGN+PVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFT RNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]
BLAST of Pay0016817 vs. ExPASy TrEMBL
Match: A0A6J1DJ99 (uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020571 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.1e-34
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MGNRPVKQPQ---EEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGN+PVKQ +   EE+FLKIVPPLDQ YVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNGWLDVSLDDPDLA L K
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of Pay0016817 vs. ExPASy TrEMBL
Match: A0A438DCX1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_085320 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60
          MGN+PVK+ +EE+FLKIVPPLD+ YVRWLARDLERIHGFTP+NPRAVKPPDHYIE+MRLN
Sbjct: 1  MGNKPVKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDV+LDDPDLA L K
Sbjct: 61 GWLDVNLDDPDLAHLFK 77

[Close]
BLAST of Pay0016817 vs. NCBI nr
Match: KAA0061729.1 (uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 1.5e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60
          MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]
BLAST of Pay0016817 vs. NCBI nr
Match: XP_016900705.1 (PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo] >XP_016900706.1 PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo] >TYJ96066.1 uncharacterized protein E5676_scaffold182G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 4.8e-37
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60
          MGN+PVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFT RNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]
BLAST of Pay0016817 vs. NCBI nr
Match: XP_038901668.1 (uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901671.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901672.1 uncharacterized protein LOC120088440 [Benincasa hispida])

HSP 1 Score: 153.7 bits (387), Expect = 6.5e-34
Identity = 71/80 (88.75%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MGNRPVKQPQE---EVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGNR VKQPQE   E+FLKIVPPLDQ Y+RWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1  MGNRAVKQPQEQRGEIFLKIVPPLDQAYLRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNGWLDVSLDDPDLA L K
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of Pay0016817 vs. NCBI nr
Match: XP_022152955.1 (uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncharacterized protein LOC111020571 [Momordica charantia])

HSP 1 Score: 152.5 bits (384), Expect = 1.5e-33
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MGNRPVKQPQ---EEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGN+PVKQ +   EE+FLKIVPPLDQ YVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNGWLDVSLDDPDLA L K
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of Pay0016817 vs. NCBI nr
Match: CBI28268.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1   MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60
           MGN+PVK+ +EE+FLKIVPPLD+ YVRWLARDLERIHGFTP+NPRAVKPPDHYIE+MRLN
Sbjct: 105 MGNKPVKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLN 164

Query: 61  GWLDVSLDDPDLARLLK 78
           GWLDV+LDDPDLA L K
Sbjct: 165 GWLDVNLDDPDLAHLFK 181

[Close]
BLAST of Pay0016817 vs. TAIR 10
Match: AT5G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-26
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 0 

Query: 1  MGNR--PVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPR-NPRAVKPPDHYIEFM 60
          MGN+   VK+ +EE+ LKIVPPLD+ ++RWLARDL+R+HGF P+ N RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNG LDV LDDPDLA L K
Sbjct: 61 RLNGSLDVDLDDPDLAHLFK 80

[Close]
BLAST of Pay0016817 vs. TAIR 10
Match: AT5G22210.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-26
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 0 

Query: 1  MGNR--PVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPR-NPRAVKPPDHYIEFM 60
          MGN+   VK+ +EE+ LKIVPPLD+ ++RWLARDL+R+HGF P+ N RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNG LDV LDDPDLA L K
Sbjct: 61 RLNGSLDVDLDDPDLAHLFK 80

The following BLAST results are available for this feature:
BLAST of Pay0016817 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0016817 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V7T47.3e-39100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S4DYB22.3e-3797.40uncharacterized protein LOC103491432 OS=Cucumis melo OX=3656 GN=LOC103491432 PE=... [more]
A0A5D3BAZ52.3e-3797.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DJ997.1e-3487.50uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A438DCX11.6e-3384.42Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_085320 PE=4 SV=1[more]
BLAST of Pay0016817 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061729.11.5e-38100.00uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa][more]
XP_016900705.14.8e-3797.40PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo] >XP_016900706.1 P... [more]
XP_038901668.16.5e-3488.75uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 unchara... [more]
XP_022152955.11.5e-3387.50uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncha... [more]
CBI28268.33.2e-3384.42unnamed protein product, partial [Vitis vinifera][more]
BLAST of Pay0016817 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G22210.11.8e-2667.50unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT5G22210.21.8e-2667.50unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0016817.1Pay0016817.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007049 cell cycle
biological_process GO:0051301 cell division
biological_process GO:0010020 chloroplast fission
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0032153 cell division site
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription regulator complex
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function GO:0016740 transferase activity