Pay0016659 (gene) Melon (Payzawat) v1

Overview
NamePay0016659
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionTy3/gypsy retrotransposon protein
Locationchr11: 28872259 .. 28872594 (-)
RNA-Seq ExpressionPay0016659
SyntenyPay0016659
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGCAATTATCAATAAGTTCAGAGAGGTGTTCGAACAACCAAACAGACTCCCACCCCAACGAGGAATAGAACATCATATATACCTAAAACAAGGAGCCGATCCAGTCAATGTTAGACCGTACCGGTACGCACACCAACAGAAAGAGGAGATGGAGAGATTGGTGGACGAGATGCTCACTTCGGGAATTATCAGGCCAAGCACCAGCCCATACTCCAGCCCAGTGTTGTTAGTAAGAAAGAAGGATGGAAGTTGGAGATTCTGTGTGGACTACCGGGCATTGAATAACAGTACCGGACAAATTCCCAATTCCAGTCGTGGAGGAGCTCTTTGA

mRNA sequence

ATGACGGCAATTATCAATAAGTTCAGAGAGGTGTTCGAACAACCAAACAGACTCCCACCCCAACGAGGAATAGAACATCATATATACCTAAAACAAGGAGCCGATCCAGTCAATGTTAGACCGTACCGGTACGCACACCAACAGAAAGAGGAGATGGAGAGATTGGTGGACGAGATGCTCACTTCGGGAATTATCAGGCCAAGCACCAGCCCATACTCCAGCCCAGTGTTGTTAGTAAGAAAGAAGGATGGAAGTTGGAGATTCTGTGTGGACTACCGGGCATTGAATAACAGTACCGGACAAATTCCCAATTCCAGTCGTGGAGGAGCTCTTTGA

Coding sequence (CDS)

ATGACGGCAATTATCAATAAGTTCAGAGAGGTGTTCGAACAACCAAACAGACTCCCACCCCAACGAGGAATAGAACATCATATATACCTAAAACAAGGAGCCGATCCAGTCAATGTTAGACCGTACCGGTACGCACACCAACAGAAAGAGGAGATGGAGAGATTGGTGGACGAGATGCTCACTTCGGGAATTATCAGGCCAAGCACCAGCCCATACTCCAGCCCAGTGTTGTTAGTAAGAAAGAAGGATGGAAGTTGGAGATTCTGTGTGGACTACCGGGCATTGAATAACAGTACCGGACAAATTCCCAATTCCAGTCGTGGAGGAGCTCTTTGA

Protein sequence

MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNSTGQIPNSSRGGAL
Homology
BLAST of Pay0016659 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-14
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 7   KFREVFEQPNRLPPQRG------IEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 66
           K+RE+    N LPP+        ++H I +K GA    ++PY    + ++E+ ++V ++L
Sbjct: 563 KYREIIR--NDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLL 622

Query: 67  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
            +  I PS SP SSPV+LV KKDG++R CVDYR LN +T
Sbjct: 623 DNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKAT 659

BLAST of Pay0016659 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-14
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 7   KFREVFEQPNRLPPQRG------IEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 66
           K+RE+    N LPP+        ++H I +K GA    ++PY    + ++E+ ++V ++L
Sbjct: 589 KYREIIR--NDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLL 648

Query: 67  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
            +  I PS SP SSPV+LV KKDG++R CVDYR LN +T
Sbjct: 649 DNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKAT 685

BLAST of Pay0016659 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 0

Query: 1   MTAIINKFREVFEQPNRLPPQRGIEHHIYLK-----QGADPVNVRPYRYAHQQKEEMERL 60
           + +++ +F  +FE     PP  G+     +K        DP+  + Y Y    + E+ER 
Sbjct: 88  LNSLLGEFPRIFE-----PPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQ 147

Query: 61  VDEMLTSGIIRPSTSPYSSPVLLVRKK-----DGSWRFCVDYRALNNST 100
           +DE+L  GIIRPS SPY+SP+ +V KK     +  +R  VD++ LN  T
Sbjct: 148 IDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVT 191

BLAST of Pay0016659 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-08
Identity = 35/105 (33.33%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 1   MTAIINKFREV-FEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEM 60
           +  ++NKFR + +++  +L     I+H +     + P+  + Y  A   + E+E  V EM
Sbjct: 171 LKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNS-PIYSKQYPLAQTHEIEVENQVQEM 230

Query: 61  LTSGIIRPSTSPYSSPVLLVRKKD-----GSWRFCVDYRALNNST 100
           L  G+IR S SPY+SP  +V KK        +R  +DYR LN  T
Sbjct: 231 LNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEIT 274

BLAST of Pay0016659 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 35  DPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDG------SWRF 94
           +PV  + YR  H Q EE++  V +++   I+ PS S Y+SP+LLV KK         WR 
Sbjct: 313 EPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRL 372

Query: 95  CVDYRALN 97
            +DYR +N
Sbjct: 373 VIDYRQIN 380

BLAST of Pay0016659 vs. ExPASy TrEMBL
Match: A0A5A7T5N7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00890 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.9e-49
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1   MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60
           MTAIINKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML
Sbjct: 1   MTAIINKFRDVFERPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60

Query: 61  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
           TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Sbjct: 61  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT 99

BLAST of Pay0016659 vs. ExPASy TrEMBL
Match: A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1   MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60
           MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML
Sbjct: 647 MTAILNKFRDVFERPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 706

Query: 61  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
           +SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Sbjct: 707 SSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT 745

BLAST of Pay0016659 vs. ExPASy TrEMBL
Match: A0A5D3DI73 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00700 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1   MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60
           MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML
Sbjct: 587 MTAILNKFRDVFERPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 646

Query: 61  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
           +SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Sbjct: 647 SSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT 685

BLAST of Pay0016659 vs. ExPASy TrEMBL
Match: A0A5A7U6J3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001310 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1   MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60
           MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML
Sbjct: 587 MTAILNKFRDVFERPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 646

Query: 61  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
           +SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Sbjct: 647 SSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT 685

BLAST of Pay0016659 vs. ExPASy TrEMBL
Match: A0A5A7SIV7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00310 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.3e-48
Identity = 93/99 (93.94%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1    MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60
            MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML
Sbjct: 907  MTAILNKFRDVFERPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 966

Query: 61   TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
            +SGIIRPSTSPYSSPVLLVRK+DGSWRFCVDYRALNN T
Sbjct: 967  SSGIIRPSTSPYSSPVLLVRKRDGSWRFCVDYRALNNVT 1005

BLAST of Pay0016659 vs. NCBI nr
Match: KAA0038243.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 6.1e-49
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1   MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60
           MTAIINKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML
Sbjct: 1   MTAIINKFRDVFERPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60

Query: 61  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
           TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Sbjct: 61  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT 99

BLAST of Pay0016659 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1   MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60
           MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML
Sbjct: 587 MTAILNKFRDVFERPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 646

Query: 61  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
           +SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Sbjct: 647 SSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT 685

BLAST of Pay0016659 vs. NCBI nr
Match: TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1   MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60
           MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML
Sbjct: 647 MTAILNKFRDVFERPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 706

Query: 61  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
           +SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Sbjct: 707 SSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT 745

BLAST of Pay0016659 vs. NCBI nr
Match: KAA0049776.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1   MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60
           MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML
Sbjct: 587 MTAILNKFRDVFERPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 646

Query: 61  TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
           +SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNN T
Sbjct: 647 SSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT 685

BLAST of Pay0016659 vs. NCBI nr
Match: KAA0025132.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 6.7e-48
Identity = 93/99 (93.94%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1    MTAIINKFREVFEQPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 60
            MTAI+NKFR+VFE+PNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML
Sbjct: 907  MTAILNKFRDVFERPNRLPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML 966

Query: 61   TSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNST 100
            +SGIIRPSTSPYSSPVLLVRK+DGSWRFCVDYRALNN T
Sbjct: 967  SSGIIRPSTSPYSSPVLLVRKRDGSWRFCVDYRALNNVT 1005

BLAST of Pay0016659 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-08
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 48  QKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRAL--NNSTGQIPNS 107
           ++  ++  + EML + II+PS SPYSSPVLLV+KKDG W       +L   + T Q+PNS
Sbjct: 41  RRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGWPTARGLPSLLQAHGTRQVPNS 100

Query: 108 SRGGAL 112
              G +
Sbjct: 101 RDRGTV 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q993151.0e-1441.41Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG51.0e-1441.41Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q8I7P91.5e-1033.94Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P208254.1e-0833.33Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P103941.2e-0739.71Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste... [more]
Match NameE-valueIdentityDescription
A0A5A7T5N72.9e-4996.97Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CXB11.5e-4894.95Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DI731.5e-4894.95Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U6J31.5e-4894.95Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7SIV73.3e-4893.94Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
KAA0038243.16.1e-4996.97Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK23090.13.0e-4894.95Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK15990.13.0e-4894.95Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049776.13.0e-4894.95Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0025132.16.7e-4893.94Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
ATMG00850.14.3e-0843.94DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 19..107
e-value: 2.6E-32
score: 113.3
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 5..96
NoneNo IPR availablePANTHERPTHR24559:SF319SUBFAMILY NOT NAMEDcoord: 5..96
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 5..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0016659.1Pay0016659.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0007034 vacuolar transport
cellular_component GO:0005768 endosome
molecular_function GO:0003676 nucleic acid binding