Pay0016387 (gene) Melon (Payzawat) v1

Overview
NamePay0016387
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionprotein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic
Locationchr11: 4673606 .. 4675324 (+)
RNA-Seq ExpressionPay0016387
SyntenyPay0016387
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGAGAGAGTTGTGTGAGAGAGAGATCAGAAGAAAAGAAAAAAGTATTAGCCAAAAGGGCACACACAAGATTAACTGAAAATGGCTGCTACCTCTACCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTGTTAGAAGTAAAACAAAATCGTCACCCAACATTACTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGTTAATATCATCTTATACTCACTCTCTTTTAGCTCTCCACTCTTGATTTCAAGTCGTGTGTTGGAAGTGTGAGTGTCTATATATATATGCATATTCTAAGTTGTGCAAGTAATTACGTTTGTTATATTCCTTGATAAGAAAAGGAAAAGAATGTGAATATCAGTGGATATATAAAATAGAATGTCAACCCCAGAAACTTGCATAAGCGATCCGTTGATGGAGTTTAGTACGTATGACAAGATCGACGAGATTGATATTCCAATTTTTCTCTTTTTACACATATTGGTTTGATCCAACAGGCAAGAGATGACAACCACTTCCCATAGTATGTTGTCACCATAAAGTATAACCTCATGTTTTTCTAAGGAATTTCCCCGGGAGTGTTTGAGGTTGAAGAGTGAAATTTAAAACGCGGCATTTAGGATAAGGGTAAGGAGTAGAAATAGTAAATATCAAAAGCTATAAAATTTCATGTAAGAAGTGGATAATAAGGTATATATATAGAATGAATATTTGTTAGTAGCGCAACTCACAAATTTTGTAAGCTAAACAAAAAGTATTGGAGTTCACAACTTCGCTGTCCAACTAGTTGAGCCCGAATACCCTTTCTAAAGTCGAGGAAGATGTAAACAAACTTTTGTTGAAGGCGTTTGACCCAACGAGTTGGAGTCTGAGGGGAGTGGAATTGTGACCTCACACTATTAAAGTTGATAAGCTTCAAAAGTGCTAAAAAAGTATCAATCTTATGTTTTATTTATAAACTCTTATATTACACACTACAAATTTACTATGACTTCAAACCCTTCACATTTTACAACTACAAAAGAATTCACAACTTCGTTTTCTTGCCTTCAAACATTTTATAAGACGATCCATAAAAAATTTTAAATGTCAAACTATCTCCTAATTGTTTCAAAAACCTAAAAGAAAATTTTTATAACGTAAAAAAGTTATGTTCGAATGTGGCAAACCTATATAATTCAACACCACTCATATATGACATATATGATCATTTTCTAGGGAACGGGAAAGAATAAGAAAAACGGAAACATCTTCGAGCGTTGGAAGTAAGTAATCTCACACTCTAATTTATCTTTTACTTTGAACTTAAATAAATCAAGCTAGGCTAATTGAATTCATCCACTGATTTAATTTCTTGATTCAGATGTTTTGAATGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGTCTCACTCCAGAACAAAGGGGAGAAAGATAAATGCATACAACAACAGCTCCTTTATAATAAACCCTTTATATATCTATACATATACTTTGAATTTTGTATTTTTTCCTGATGTAATCATGTATCTCACAAGGTTTCTAATTTATATTACATTTTTGTATATTAAATGTGTTTGCTTTTCTTTTTTGATCCTTTTGAATTTTGGCTATTGAAAATACTTTATACTCAA

mRNA sequence

GGAGAGAGAGTTGTGTGAGAGAGAGATCAGAAGAAAAGAAAAAAGTATTAGCCAAAAGGGCACACACAAGATTAACTGAAAATGGCTGCTACCTCTACCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTGTTAGAAGTAAAACAAAATCGTCACCCAACATTACTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGAACGGGAAAGAATAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTTGAATGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGTCTCACTCCAGAACAAAGGGGAGAAAGATAAATGCATACAACAACAGCTCCTTTATAATAAACCCTTTATATATCTATACATATACTTTGAATTTTGTATTTTTTCCTGATGTAATCATGTATCTCACAAGGTTTCTAATTTATATTACATTTTTGTATATTAAATGTGTTTGCTTTTCTTTTTTGATCCTTTTGAATTTTGGCTATTGAAAATACTTTATACTCAA

Coding sequence (CDS)

ATGGCTGCTACCTCTACCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTGTTAGAAGTAAAACAAAATCGTCACCCAACATTACTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGAACGGGAAAGAATAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTTGAATGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGTCTCACTCCAGAACAAAGGGGAGAAAGATAA

Protein sequence

MAATSTSTSINIFPFPSYQIVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Homology
BLAST of Pay0016387 vs. ExPASy TrEMBL
Match: A0A1S3C9W1 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498437 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.2e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MAATSTSTSINIFPFPSYQIVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAIDCP 60
           MAATSTSTSINIFPFPSYQIVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAIDCP
Sbjct: 1   MAATSTSTSINIFPFPSYQIVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAIDCP 60

Query: 61  GCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 108
           GCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 61  GCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

BLAST of Pay0016387 vs. ExPASy TrEMBL
Match: A0A0A0LIM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.0e-51
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 5   STSTSINIFPFPSYQIVRSKTKSSPN-ITVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 64
           +TSTSINIFPFPSYQI RSK KSSPN I VPFAALPTSNLLPKRCQKCGGKGAIDCPGCK
Sbjct: 3   ATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 62

Query: 65  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 108
           GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 63  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

BLAST of Pay0016387 vs. ExPASy TrEMBL
Match: A0A6J1HLG5 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464051 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.0e-35
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 0

Query: 2   AATSTSTSINIFPFPSYQ---IVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAID 61
           + + ++ S + FPFP +    + ++K +S P+  +PFAA P  + LPKRCQ CGGKGAID
Sbjct: 7   SVSKSNNSTSPFPFPPHGFAILPQNKCRSKPS-NIPFAAAPKFS-LPKRCQTCGGKGAID 66

Query: 62  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 108
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 67  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of Pay0016387 vs. ExPASy TrEMBL
Match: A0A6J1JSI3 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487154 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.7e-34
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 2   AATSTSTSINIFPFPSYQ---IVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAID 61
           + + ++ S   FPFP +    + ++K++S P+  +PFAA P  + LPKRCQ CGGKGAID
Sbjct: 7   SVSKSNNSTFPFPFPPHGFAILPQNKSRSKPS-NIPFAAAPKFS-LPKRCQTCGGKGAID 66

Query: 62  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 108
           C GCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 67  CTGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of Pay0016387 vs. ExPASy TrEMBL
Match: A0A6J1DHW0 (uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020203 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.4e-33
Identity = 73/110 (66.36%), Postives = 79/110 (71.82%), Query Frame = 0

Query: 5   STSTSINIFPF-------PSYQIVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAI 64
           S+ T   IFPF       P   ++    K      + F A  T + LPKRCQKCGGKGAI
Sbjct: 12  SSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFGAAATFS-LPKRCQKCGGKGAI 71

Query: 65  DCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 108
           DCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCP+CG GGLTPEQRGER
Sbjct: 72  DCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECGNGGLTPEQRGER 120

BLAST of Pay0016387 vs. NCBI nr
Match: XP_008459263.1 (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 1.7e-56
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MAATSTSTSINIFPFPSYQIVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAIDCP 60
           MAATSTSTSINIFPFPSYQIVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAIDCP
Sbjct: 1   MAATSTSTSINIFPFPSYQIVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAIDCP 60

Query: 61  GCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 108
           GCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 61  GCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

BLAST of Pay0016387 vs. NCBI nr
Match: XP_004153120.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hypothetical protein Csa_005912 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 8.2e-51
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 5   STSTSINIFPFPSYQIVRSKTKSSPN-ITVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 64
           +TSTSINIFPFPSYQI RSK KSSPN I VPFAALPTSNLLPKRCQKCGGKGAIDCPGCK
Sbjct: 3   ATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 62

Query: 65  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 108
           GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 63  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

BLAST of Pay0016387 vs. NCBI nr
Match: XP_038901776.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 3.6e-38
Identity = 84/111 (75.68%), Postives = 93/111 (83.78%), Query Frame = 0

Query: 3   ATSTSTSINIFPFPSYQIVR------SKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGA 62
           A + ++S NIFPF  Y++VR      SKTKSS NI++  AA   S LLPKRCQKCGGKGA
Sbjct: 8   AMAMASSNNIFPFSPYRLVRSSPPYTSKTKSS-NISLAAAAAARS-LLPKRCQKCGGKGA 67

Query: 63  IDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 108
           IDCPGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLTPEQRGER
Sbjct: 68  IDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQRGER 116

BLAST of Pay0016387 vs. NCBI nr
Match: XP_022963874.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 157.1 bits (396), Expect = 8.2e-35
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 0

Query: 2   AATSTSTSINIFPFPSYQ---IVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAID 61
           + + ++ S + FPFP +    + ++K +S P+  +PFAA P  + LPKRCQ CGGKGAID
Sbjct: 7   SVSKSNNSTSPFPFPPHGFAILPQNKCRSKPS-NIPFAAAPKFS-LPKRCQTCGGKGAID 66

Query: 62  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 108
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 67  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of Pay0016387 vs. NCBI nr
Match: XP_023521952.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553311.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553319.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.4 bits (394), Expect = 1.4e-34
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 0

Query: 2   AATSTSTSINIFPFPSYQ---IVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAID 61
           + + ++ S   FPFP +    + ++K++S P+  +PFAA P  + LPKRCQ CGGKGAID
Sbjct: 7   SVSKSNNSTFPFPFPPHGFAILPQNKSRSKPS-NIPFAAAPKFS-LPKRCQTCGGKGAID 66

Query: 62  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 108
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 67  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of Pay0016387 vs. TAIR 10
Match: AT1G22630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 131.0 bits (328), Expect = 5.9e-31
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 46  KRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRG 105
           K C+ CG KGAI+CPGCKGTGKNKKNGN+FERWKCF+CQGFG+KSCP+CGKGGLTPEQRG
Sbjct: 49  KSCETCGAKGAIECPGCKGTGKNKKNGNMFERWKCFDCQGFGMKSCPKCGKGGLTPEQRG 108

Query: 106 ER 108
           ER
Sbjct: 109 ER 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3C9W18.2e-57100.00protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 G... [more]
A0A0A0LIM54.0e-5195.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1[more]
A0A6J1HLG54.0e-3567.89protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JSI35.7e-3466.97protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1DHW06.4e-3366.36uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
Match NameE-valueIdentityDescription
XP_008459263.11.7e-56100.00PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo][more]
XP_004153120.18.2e-5195.19protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hy... [more]
XP_038901776.13.6e-3875.68protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida][more]
XP_022963874.18.2e-3567.89protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata][more]
XP_023521952.11.4e-3467.89protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo... [more]
Match NameE-valueIdentityDescription
AT1G22630.15.9e-3185.48unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXP... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR15852PLASTID TRANSCRIPTIONALLY ACTIVE PROTEINcoord: 23..107
NoneNo IPR availablePANTHERPTHR15852:SF55PROTEIN EMBRYO SAC DEVELOPMENT ARREST 3, CHLOROPLASTIC ISOFORM X1coord: 23..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0016387.1Pay0016387.1mRNA