Pay0016121 (gene) Melon (Payzawat) v1

Overview


Name	Pay0016121
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr02: 2231583 .. 2232712 (-)
RNA-Seq Expression	Pay0016121
Synteny	Pay0016121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTGATTTCAACCGTCCGTTCCGTTTTGAAGGAGCATACTTCAAAAGGTGGAAACAAAAGATGTTATTTTTTCTCACACTAAAGAAGGTGACCACTGCTTGTACTACTGAAAAGTCGAAGGTTTTAGAAAAAGATCCTACAGAAGAACAACTAAAGAACCTCGTCACCTGGACAGAAACTGACTTCATCTGTAAGAACCTAATTCTTAATGGTCTTACTGATGAACTATATGATTATTACAGTACCATGACTACTGCAAAAGAAGTATGGGACGCGCTACAAAAGAAGTACGATACTGAAGAAGCGGGGTCGAAGAAGTACGCTGTCAGCCGATACCTGATATATCAAATGATCGATGACAAATCCGTGGAGGCATAGTCACATGAAATCTAGAAAATAGCCCATGAGATTATTAGTTAAGACATGCCACTCGATGATCAATTTCAAGTTGCTGTTATTATTGATAAATTACCTCCATTATGGAAGGATTTCAAGAACACCCTAAGGCACAAAACCAAGGAGTTCTCACTGGAAAGTCTAATCACGAGGCTAAGGATAGAGGAGGAAGCAAGGAAGCATGATAAAAAAGAAGAGGGGAACGTTATCCCCAGAAAGAAGCTCACTGCAGTTCTGAAACTAGATCTGAAGCTGAAAGGAAACAAGATGAAACGAGGATTCAACAAACAAAACAACCCACAGTCTAGAAGTACGGTACAAATTGTTTGTTATAATTGTAATAAGCCTGGTCATTTAGCTAGAAATTGTAGAAATAGGAGTCGTCCTGCTGCGCAGGCGAACCTAATAGAAGATGAATTGGTAGCTATGATATTTGAAGTTAATGTGATTGGGAGGTCTGAAGGTTGGTGGCTAGACACTGGTGCATCCCGCCATGTCTACCACGACCTTAGTCTTTTTAGAAAATATAATGAAGTTAAGGATAAGAATATCCTTCTAGGAGATCATCACAGAACCAAGGTGGTCGGTATTGGAGAAGTAGAACTGAAATTCACATCCGGCAAGACGCTTGTGTTGAAGGAAGTTCTGCATACTTCAGAATTTCGAAAGAATTTAGTTTCTGGATATCTCCTCAACAAGGATGGATCCACACAAACCATAGGATTTGA

mRNA sequence

ATGTCTTCTGATTTCAACCGTCCGTTCCGTTTTGAAGGAGCATACTTCAAAAGGTGGAAACAAAAGATGTTATTTTTTCTCACACTAAAGAAGGTGACCACTGCTTGTACTACTGAAAAGTCGAAGGTTTTAGAAAAAGATCCTACAGAAGAACAACTAAAGAACCTCGTCACCTGGACAGAAACTGACTTCATCTGTAAGAACCTAATTCTTAATGGTCTTACTGATGAACTATATGATTATTACAGTACCATGACTACTGCAAAAGAAGTATGGGACGCGCTACAAAAGAAGTACGATACTGAAGAAGCGGGGTCGAAGAAGTACGCTGTCAGCCGATACCTGATATATCAAATGATCGATGACAAATCCGATTTCAAGAACACCCTAAGGCACAAAACCAAGGAGTTCTCACTGGAAAGTCTAATCACGAGGCTAAGGATAGAGGAGGAAGCAAGGAAGCATGATAAAAAAGAAGAGGGGAACGTTATCCCCAGAAAGAAGCTCACTGCAGTTCTGAAACTAGATCTGAAGCTGAAAGGAAACAAGATGAAACGAGGATTCAACAAACAAAACAACCCACAGTCTAGAAGTACGGTACAAATTGTTTGTTATAATTGTAATAAGCCTGGTCATTTAGCTAGAAATTGTAGAAATAGGAGTCGTCCTGCTGCGCAGGCGAACCTAATAGAAGATGAATTGGTAGCTATGATATTTGAAGTTAATGTGATTGGGAGGTCTGAAGGTTGGAGATCATCACAGAACCAAGGTGGTCGGTATTGGAGAAGTAGAACTGAAATTCACATCCGGCAAGACGCTTGTGTTGAAGGAAGTTCTGCATACTTCAGAATTTCGAAAGAATTTAGTTTCTGGATATCTCCTCAACAAGGATGGATCCACACAAACCATAGGATTTGA

Coding sequence (CDS)

ATGTCTTCTGATTTCAACCGTCCGTTCCGTTTTGAAGGAGCATACTTCAAAAGGTGGAAACAAAAGATGTTATTTTTTCTCACACTAAAGAAGGTGACCACTGCTTGTACTACTGAAAAGTCGAAGGTTTTAGAAAAAGATCCTACAGAAGAACAACTAAAGAACCTCGTCACCTGGACAGAAACTGACTTCATCTGTAAGAACCTAATTCTTAATGGTCTTACTGATGAACTATATGATTATTACAGTACCATGACTACTGCAAAAGAAGTATGGGACGCGCTACAAAAGAAGTACGATACTGAAGAAGCGGGGTCGAAGAAGTACGCTGTCAGCCGATACCTGATATATCAAATGATCGATGACAAATCCGATTTCAAGAACACCCTAAGGCACAAAACCAAGGAGTTCTCACTGGAAAGTCTAATCACGAGGCTAAGGATAGAGGAGGAAGCAAGGAAGCATGATAAAAAAGAAGAGGGGAACGTTATCCCCAGAAAGAAGCTCACTGCAGTTCTGAAACTAGATCTGAAGCTGAAAGGAAACAAGATGAAACGAGGATTCAACAAACAAAACAACCCACAGTCTAGAAGTACGGTACAAATTGTTTGTTATAATTGTAATAAGCCTGGTCATTTAGCTAGAAATTGTAGAAATAGGAGTCGTCCTGCTGCGCAGGCGAACCTAATAGAAGATGAATTGGTAGCTATGATATTTGAAGTTAATGTGATTGGGAGGTCTGAAGGTTGGAGATCATCACAGAACCAAGGTGGTCGGTATTGGAGAAGTAGAACTGAAATTCACATCCGGCAAGACGCTTGTGTTGAAGGAAGTTCTGCATACTTCAGAATTTCGAAAGAATTTAGTTTCTGGATATCTCCTCAACAAGGATGGATCCACACAAACCATAGGATTTGA

Protein sequence

MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWTETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMIDDKSDFKNTLRHKTKEFSLESLITRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLKLKGNKMKRGFNKQNNPQSRSTVQIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMIFEVNVIGRSEGWRSSQNQGGRYWRSRTEIHIRQDACVEGSSAYFRISKEFSFWISPQQGWIHTNHRI

Homology

[Close]

BLAST of Pay0016121 vs. ExPASy TrEMBL
Match: A0A5A7UA92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00260 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 2.2e-94
Identity = 197/290 (67.93%), Postives = 206/290 (71.03%), Query Frame = 0


Query: 1   MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWT 60
           MSSD NRPFRFEGA+FKRWKQKMLFFLTLKKV TACTTEK KV EKDPT+EQLKNL TWT
Sbjct: 6   MSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPKVSEKDPTKEQLKNLTTWT 65

Query: 61  ETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMI 120
           ETDFICKNLILNGLTDELYDYYSTMTTAK+VW+ALQKKYDTEEAGSKKYAVSRYL YQM 
Sbjct: 66  ETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMT 125

Query: 121 DDKS----------------------------------------DFKNTLRHKTKEFSLE 180
           DD+S                                        DFKNTLRHKTKEFSLE
Sbjct: 126 DDRSVEAQSHEIQKIAHEIINEGMPLDDQFQVTIIIDKLLLLWKDFKNTLRHKTKEFSLE 185

Query: 181 SLITRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLKLKGNKMKRGFNKQNNPQSRSTV 240
           +L TRLRIEEEA+KHDKKEE N IPRKK TAVLK DLK KGNKMK+GFNKQNNPQS S  
Sbjct: 186 NLTTRLRIEEEAKKHDKKEEVNAIPRKKFTAVLKSDLKPKGNKMKQGFNKQNNPQSTS-- 245

Query: 241 QIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMIFEVNVIGRSEGW 251
                                     ANLIE+ELVAMI EVNVIG SEGW
Sbjct: 246 -------------------------MANLIENELVAMISEVNVIGGSEGW 268

[Close]

BLAST of Pay0016121 vs. ExPASy TrEMBL
Match: A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.6e-92
Identity = 194/290 (66.90%), Postives = 205/290 (70.69%), Query Frame = 0


Query: 1   MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWT 60
           MSSD NRPFRFEGA+FKRWKQKMLFFLTLKKV TACT EK KV EKDPT+EQLKNL TWT
Sbjct: 6   MSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTIEKPKVSEKDPTKEQLKNLTTWT 65

Query: 61  ETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMI 120
           ETDFICKNLILNGLTDELYDYYSTMTTAK+VW+ALQKKYDTEEAGSKKYAVSRYL YQM 
Sbjct: 66  ETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMT 125

Query: 121 DDKS----------------------------------------DFKNTLRHKTKEFSLE 180
           DD+S                                        DFKNTLRHKTKEFSLE
Sbjct: 126 DDRSVEAQSHEIQKIAHEIINEGMPLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLE 185

Query: 181 SLITRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLKLKGNKMKRGFNKQNNPQSRSTV 240
           +LITRL+IEEEA+K DKK+E N IPRKK TAVLK DLK KGNKMK+GFNKQNNPQS S  
Sbjct: 186 NLITRLKIEEEAKKRDKKKEVNAIPRKKFTAVLKSDLKPKGNKMKQGFNKQNNPQSTS-- 245

Query: 241 QIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMIFEVNVIGRSEGW 251
                                     ANLIE+ELVAMI EVNVIG SEGW
Sbjct: 246 -------------------------MANLIENELVAMISEVNVIGGSEGW 268

[Close]

BLAST of Pay0016121 vs. ExPASy TrEMBL
Match: A0A5D3DRT2 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00180 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 5.5e-90
Identity = 187/252 (74.21%), Postives = 194/252 (76.98%), Query Frame = 0


Query: 1   MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWT 60
           MS + N PFRF+GA+FKRWKQKMLFFLTLKKV TACT EK KV EKDPT+EQL +L TWT
Sbjct: 10  MSFNLNCPFRFKGAHFKRWKQKMLFFLTLKKVATACTIEKPKVSEKDPTKEQLTSLATWT 69

Query: 61  ETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMI 120
           ETDFICKNLILNGLTDELYDYYSTM TAKEVWD LQ KYD EE GSKKY VSRYL YQM 
Sbjct: 70  ETDFICKNLILNGLTDELYDYYSTMATAKEVWDVLQNKYDIEETGSKKYVVSRYLRYQMT 129

Query: 121 DDKS--DFKNTLRHKTKEFSLESLITRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLK 180
           DDKS  DFKNTLRHKTKE SL+SLITRLRIEEEARKH+KKEE N IPRKK TAVLK DLK
Sbjct: 130 DDKSVEDFKNTLRHKTKELSLKSLITRLRIEEEARKHNKKEEVNAIPRKKPTAVLKPDLK 189

Query: 181 LKGNKMKRGFNKQNNPQSRSTVQIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMI 240
            KGNKMKR  NKQNNPQSRST                           ANLIEDELVAMI
Sbjct: 190 PKGNKMKRESNKQNNPQSRST---------------------------ANLIEDELVAMI 234

Query: 241 FEVNVIGRSEGW 251
            EVNVI   EGW
Sbjct: 250 SEVNVIRGFEGW 234

[Close]

BLAST of Pay0016121 vs. ExPASy TrEMBL
Match: A0A5A7UN04 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00700 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 2.0e-79
Identity = 171/250 (68.40%), Postives = 179/250 (71.60%), Query Frame = 0


Query: 1   MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWT 60
           MSSD NRPFRFEGAYFKRWKQKMLFFLTLKKV TACTTEK K                  
Sbjct: 11  MSSDLNRPFRFEGAYFKRWKQKMLFFLTLKKVVTACTTEKPK------------------ 70

Query: 61  ETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMI 120
                                 STMTT KEVWDALQKKYDTEEAGSKKYAVSRYL YQM 
Sbjct: 71  ----------------------STMTTVKEVWDALQKKYDTEEAGSKKYAVSRYLRYQMT 130

Query: 121 DDKSDFKNTLRHKTKEFSLESLITRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLKLK 180
           DDKS       H+  + + E +      +EEARKHD+KEE NVIPRKK TAVLK DLK K
Sbjct: 131 DDKS--VEAQSHEIHKIAHEIISE----DEEARKHDQKEEVNVIPRKKPTAVLKPDLKPK 190

Query: 181 GNKMKRGFNKQNNPQSRSTVQIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMIFE 240
           GNKMKR  NKQNNPQSRSTVQIVCYNCNKPGHLARNCRNRSRPAAQANLIEDEL+AMIFE
Sbjct: 191 GNKMKRESNKQNNPQSRSTVQIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELIAMIFE 214

Query: 241 VNVIGRSEGW 251
           VNVIG S+GW
Sbjct: 251 VNVIGGSKGW 214

[Close]

BLAST of Pay0016121 vs. ExPASy TrEMBL
Match: A0A5A7T6X0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001570 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.6e-79
Identity = 168/227 (74.01%), Postives = 174/227 (76.65%), Query Frame = 0


Query: 24  LFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWTETDFICKNLILNGLTDELYDYYS 83
           +FFLTLKKV T CTTEKSK+ EKDPTEEQ+K+LVTWTET+FICKNLILNGLTDELYDYYS
Sbjct: 1   MFFLTLKKVATVCTTEKSKISEKDPTEEQMKDLVTWTETNFICKNLILNGLTDELYDYYS 60

Query: 84  TMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMIDDKSDFKNTLRHKTKEFSLESLI 143
           TMTT KEVWDALQKKYDTEEAGSKKYA              DFKNTLRHK KEFSLESLI
Sbjct: 61  TMTTVKEVWDALQKKYDTEEAGSKKYA-------------KDFKNTLRHKIKEFSLESLI 120

Query: 144 TRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLKLKGNKMKRGFNKQNNPQSRSTVQIV 203
           TRLRIEEEARKHD+KEE NVIPRKK T VLKLDLK KGNKMKRG NKQNNPQSRS     
Sbjct: 121 TRLRIEEEARKHDQKEEVNVIPRKKPTTVLKLDLKPKGNKMKRGSNKQNNPQSRS----- 180

Query: 204 CYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMIFEVNVIGRSEGW 251
                                  ANLIEDELVAMI EVNVIGRSEGW
Sbjct: 181 ----------------------MANLIEDELVAMISEVNVIGRSEGW 187

[Close]

BLAST of Pay0016121 vs. NCBI nr
Match: KAA0050409.1 (hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 355.5 bits (911), Expect = 4.5e-94
Identity = 197/290 (67.93%), Postives = 206/290 (71.03%), Query Frame = 0


Query: 1   MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWT 60
           MSSD NRPFRFEGA+FKRWKQKMLFFLTLKKV TACTTEK KV EKDPT+EQLKNL TWT
Sbjct: 6   MSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPKVSEKDPTKEQLKNLTTWT 65

Query: 61  ETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMI 120
           ETDFICKNLILNGLTDELYDYYSTMTTAK+VW+ALQKKYDTEEAGSKKYAVSRYL YQM 
Sbjct: 66  ETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMT 125

Query: 121 DDKS----------------------------------------DFKNTLRHKTKEFSLE 180
           DD+S                                        DFKNTLRHKTKEFSLE
Sbjct: 126 DDRSVEAQSHEIQKIAHEIINEGMPLDDQFQVTIIIDKLLLLWKDFKNTLRHKTKEFSLE 185

Query: 181 SLITRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLKLKGNKMKRGFNKQNNPQSRSTV 240
           +L TRLRIEEEA+KHDKKEE N IPRKK TAVLK DLK KGNKMK+GFNKQNNPQS S  
Sbjct: 186 NLTTRLRIEEEAKKHDKKEEVNAIPRKKFTAVLKSDLKPKGNKMKQGFNKQNNPQSTS-- 245

Query: 241 QIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMIFEVNVIGRSEGW 251
                                     ANLIE+ELVAMI EVNVIG SEGW
Sbjct: 246 -------------------------MANLIENELVAMISEVNVIGGSEGW 268

[Close]

BLAST of Pay0016121 vs. NCBI nr
Match: TYJ98000.1 (hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 349.4 bits (895), Expect = 3.2e-92
Identity = 194/290 (66.90%), Postives = 205/290 (70.69%), Query Frame = 0


Query: 1   MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWT 60
           MSSD NRPFRFEGA+FKRWKQKMLFFLTLKKV TACT EK KV EKDPT+EQLKNL TWT
Sbjct: 6   MSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTIEKPKVSEKDPTKEQLKNLTTWT 65

Query: 61  ETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMI 120
           ETDFICKNLILNGLTDELYDYYSTMTTAK+VW+ALQKKYDTEEAGSKKYAVSRYL YQM 
Sbjct: 66  ETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMT 125

Query: 121 DDKS----------------------------------------DFKNTLRHKTKEFSLE 180
           DD+S                                        DFKNTLRHKTKEFSLE
Sbjct: 126 DDRSVEAQSHEIQKIAHEIINEGMPLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLE 185

Query: 181 SLITRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLKLKGNKMKRGFNKQNNPQSRSTV 240
           +LITRL+IEEEA+K DKK+E N IPRKK TAVLK DLK KGNKMK+GFNKQNNPQS S  
Sbjct: 186 NLITRLKIEEEAKKRDKKKEVNAIPRKKFTAVLKSDLKPKGNKMKQGFNKQNNPQSTS-- 245

Query: 241 QIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMIFEVNVIGRSEGW 251
                                     ANLIE+ELVAMI EVNVIG SEGW
Sbjct: 246 -------------------------MANLIENELVAMISEVNVIGGSEGW 268

[Close]

BLAST of Pay0016121 vs. NCBI nr
Match: KAA0059670.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK26109.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 340.9 bits (873), Expect = 1.1e-89
Identity = 187/252 (74.21%), Postives = 194/252 (76.98%), Query Frame = 0


Query: 1   MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWT 60
           MS + N PFRF+GA+FKRWKQKMLFFLTLKKV TACT EK KV EKDPT+EQL +L TWT
Sbjct: 10  MSFNLNCPFRFKGAHFKRWKQKMLFFLTLKKVATACTIEKPKVSEKDPTKEQLTSLATWT 69

Query: 61  ETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMI 120
           ETDFICKNLILNGLTDELYDYYSTM TAKEVWD LQ KYD EE GSKKY VSRYL YQM 
Sbjct: 70  ETDFICKNLILNGLTDELYDYYSTMATAKEVWDVLQNKYDIEETGSKKYVVSRYLRYQMT 129

Query: 121 DDKS--DFKNTLRHKTKEFSLESLITRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLK 180
           DDKS  DFKNTLRHKTKE SL+SLITRLRIEEEARKH+KKEE N IPRKK TAVLK DLK
Sbjct: 130 DDKSVEDFKNTLRHKTKELSLKSLITRLRIEEEARKHNKKEEVNAIPRKKPTAVLKPDLK 189

Query: 181 LKGNKMKRGFNKQNNPQSRSTVQIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMI 240
            KGNKMKR  NKQNNPQSRST                           ANLIEDELVAMI
Sbjct: 190 PKGNKMKRESNKQNNPQSRST---------------------------ANLIEDELVAMI 234

Query: 241 FEVNVIGRSEGW 251
            EVNVI   EGW
Sbjct: 250 SEVNVIRGFEGW 234

[Close]

BLAST of Pay0016121 vs. NCBI nr
Match: KAA0054951.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK22740.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 305.8 bits (782), Expect = 4.1e-79
Identity = 171/250 (68.40%), Postives = 179/250 (71.60%), Query Frame = 0


Query: 1   MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWT 60
           MSSD NRPFRFEGAYFKRWKQKMLFFLTLKKV TACTTEK K                  
Sbjct: 11  MSSDLNRPFRFEGAYFKRWKQKMLFFLTLKKVVTACTTEKPK------------------ 70

Query: 61  ETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMI 120
                                 STMTT KEVWDALQKKYDTEEAGSKKYAVSRYL YQM 
Sbjct: 71  ----------------------STMTTVKEVWDALQKKYDTEEAGSKKYAVSRYLRYQMT 130

Query: 121 DDKSDFKNTLRHKTKEFSLESLITRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLKLK 180
           DDKS       H+  + + E +      +EEARKHD+KEE NVIPRKK TAVLK DLK K
Sbjct: 131 DDKS--VEAQSHEIHKIAHEIISE----DEEARKHDQKEEVNVIPRKKPTAVLKPDLKPK 190

Query: 181 GNKMKRGFNKQNNPQSRSTVQIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMIFE 240
           GNKMKR  NKQNNPQSRSTVQIVCYNCNKPGHLARNCRNRSRPAAQANLIEDEL+AMIFE
Sbjct: 191 GNKMKRESNKQNNPQSRSTVQIVCYNCNKPGHLARNCRNRSRPAAQANLIEDELIAMIFE 214

Query: 241 VNVIGRSEGW 251
           VNVIG S+GW
Sbjct: 251 VNVIGGSKGW 214

[Close]

BLAST of Pay0016121 vs. NCBI nr
Match: KAA0037119.1 (uncharacterized protein E6C27_scaffold379G00230 [Cucumis melo var. makuwa] >TYK13955.1 uncharacterized protein E5676_scaffold832G001570 [Cucumis melo var. makuwa])

HSP 1 Score: 305.4 bits (781), Expect = 5.3e-79
Identity = 168/227 (74.01%), Postives = 174/227 (76.65%), Query Frame = 0


Query: 24  LFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWTETDFICKNLILNGLTDELYDYYS 83
           +FFLTLKKV T CTTEKSK+ EKDPTEEQ+K+LVTWTET+FICKNLILNGLTDELYDYYS
Sbjct: 1   MFFLTLKKVATVCTTEKSKISEKDPTEEQMKDLVTWTETNFICKNLILNGLTDELYDYYS 60

Query: 84  TMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMIDDKSDFKNTLRHKTKEFSLESLI 143
           TMTT KEVWDALQKKYDTEEAGSKKYA              DFKNTLRHK KEFSLESLI
Sbjct: 61  TMTTVKEVWDALQKKYDTEEAGSKKYA-------------KDFKNTLRHKIKEFSLESLI 120

Query: 144 TRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLKLKGNKMKRGFNKQNNPQSRSTVQIV 203
           TRLRIEEEARKHD+KEE NVIPRKK T VLKLDLK KGNKMKRG NKQNNPQSRS     
Sbjct: 121 TRLRIEEEARKHDQKEEVNVIPRKKPTTVLKLDLKPKGNKMKRGSNKQNNPQSRS----- 180

Query: 204 CYNCNKPGHLARNCRNRSRPAAQANLIEDELVAMIFEVNVIGRSEGW 251
                                  ANLIEDELVAMI EVNVIGRSEGW
Sbjct: 181 ----------------------MANLIEDELVAMISEVNVIGRSEGW 187

[Close]

BLAST of Pay0016121 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-09
Identity = 66/283 (23.32%), Postives = 115/283 (40.64%), Query Frame = 0


Query: 10  RFEGAYFKRWKQKMLFFLTLKKVTTACTTE-----KSKVLEKDPTEEQLKNLV--TWTET 69
           RF+G  +  W  +M  FL   K+T   +        S+  E +P E    +     W   
Sbjct: 197 RFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKWLRD 256

Query: 70  DFICKNLILNGLTDELYDYYS-TMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLIYQMID 129
           D++C   ++N L+D LY  YS     AKE+WD L+  Y  +E+ SK+  V +Y+ ++M++
Sbjct: 257 DYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRMVE 316

Query: 130 DK---------------------------------SDFKNTLRHKTKEFSLES------L 189
           ++                                 S F  + R        E       L
Sbjct: 317 ERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEEEYLPVWML 376

Query: 190 ITRLRIEEEARKHDKKEEGNVIPRKKLTAVLKLDLKLKGNKMKRGFN----KQNNPQSRS 239
           + R++ EEE  ++  K     +  +  T   +++         RG      K+  P+   
Sbjct: 377 MERVKAEEELLRNGAKG----VTYRPATGSSQMERTPSLGTTHRGSQSVGWKRKEPERDE 436

The following BLAST results are available for this feature:

BLAST of Pay0016121 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0016121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UA92	2.2e-94	67.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BDS3	1.6e-92	66.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DRT2	5.5e-90	74.21	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111...	[more]
A0A5A7UN04	2.0e-79	68.40	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold116...	[more]
A0A5A7T6X0	2.6e-79	74.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Pay0016121 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050409.1	4.5e-94	67.93	hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]	[more]
TYJ98000.1	3.2e-92	66.90	hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]	[more]
KAA0059670.1	1.1e-89	74.21	putative Polyprotein [Cucumis melo var. makuwa] >TYK26109.1 putative Polyprotein...	[more]
KAA0054951.1	4.1e-79	68.40	putative Polyprotein [Cucumis melo var. makuwa] >TYK22740.1 putative Polyprotein...	[more]
KAA0037119.1	5.3e-79	74.01	uncharacterized protein E6C27_scaffold379G00230 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of Pay0016121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	1.6e-09	23.32	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 203..219 e-value: 4.7E-6 score: 36.1
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 203..218 e-value: 3.9E-7 score: 29.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 204..219 score: 10.641686
None	No IPR available	GENE3D	4.10.60.10		coord: 179..274 e-value: 7.9E-8 score: 34.0
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 59..124 e-value: 9.0E-8 score: 32.0
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 9..252
None	No IPR available	PANTHER	PTHR47592:SF11	SUBFAMILY NOT NAMED	coord: 9..252
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 191..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0016121.1	Pay0016121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding