Pay0016053 (gene) Melon (Payzawat) v1

Overview


Name	Pay0016053
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	CLAVATA3/ESR (CLE)-related protein 25-like
Location	chr03: 23615452 .. 23616982 (+)
RNA-Seq Expression	Pay0016053
Synteny	Pay0016053

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAATCTCTCTAGGTTCGAGAAAGTGCAATAGAATCCTAAAGAGAAAACCCAATAACACCAAACCACCTTTGAATAAAACCCTTTGTTCAACCAAAATATATAACACAAAACAAACTTCACTTCGAACAAATTACACCAATTTCTTTTCTCTCTTTTCTTCTCTCAACATAACCCAAAATCAAAATCCTGTCATGTAGCGAGTTTAAAGAGAAAGAGAGGGCAGAGAAAATGACTTGTTATTGTTGGTGTTCTTCTTGTAAGTTTGGTTCACTTCTTGTTATGGCTTTTATTTGGCTTTTGTTGGCTAATGGTTCGTGTCAAAGGAAAGAACCTGTCGTGGTGGGGAAGGTGACGACAGCGATGGGAGATGAATTCAGTGGAGTTTTCAAAAAGACGACGGTGGTGGTGGGTGGCGGGAAGGTTGTTGATCATCCAGAGTGGCATCTCAACTACATGAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCTATCCATAATCGGTACGACGATGTTTTTTTTAGTTCAACTATATAAGTGAGAATAGAGGTTTGAACTTTCGACGATTTTAAGAGCAATGATCAAATTACACCTAATTCCATGCTCCTGTTTTTTAAAAAGAAAAATAAATTGGCACGTGAAAATTTACGAGTTTTTTCAAATCGAAATTAATTATAATGTCTTTTAATTAGCAATTGAGTTATGGTAAACGTTATGTGGTTGGTACATGTTTGAAATCTTATCTTGTTTTTGTTGTTGTTATTATTATTTGCTTCACTCAAAAGAAAAAAAAAAGTGGGAAATTTAAGAAAGTATATTTGATAGATTTAGAGAGAGAGAGAGAGAGAAATGAGAAATAGAAAAAGAAAGATAGGAGTGGGAGAGATAAAAAGTTGAAAATTTAATAACTTTGCCTTTTAAAACTGTTACATTGAGTTTCTTTTAGCTTAAAAAGGGTGTCATTTAAAGTCACTCTTGGTTGAAGGTGAGAGAGACACAAACATCTTTAAAACCACAGTAAATAAAAGTATGTGTTTTGTGTGTACTTCAATATATTCCATCCCCCCCTTTTCCTTAACCTTAATTTATATCTCTTTATCCATATATATCACTTTGGTACGTAGTTTAAAGTATTTTAATTCAAAAATACATAATTATAATATATTTATTAGATACATGAAGATCATCACTCAAGTTTATATTTTTGGTTTCTTGTTTCTGTACGTAGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAGCCCTTAAGAAAGAAACTAAATTAAAAAGCTTTTGTAACAAATTGGGCTTTCAAGATCATGACACCAAGATGCATCGTCTGTGCTATCTTGTATGTATTAACTTTAGGTATTAAATGATGAAAAAACTTATCGGATCCCGATTTTTCCTTCAGAAATTTTAATTAGGATCCTTTCGATAATTTTTTTGTTTTTAGCTTTAAACATCCATATGTGTATTTGCTGTGACTTTTCTTGATCAATCTGTCTCATCTAATTATCATAACC

mRNA sequence

CTCAATCTCTCTAGGTTCGAGAAAGTGCAATAGAATCCTAAAGAGAAAACCCAATAACACCAAACCACCTTTGAATAAAACCCTTTGTTCAACCAAAATATATAACACAAAACAAACTTCACTTCGAACAAATTACACCAATTTCTTTTCTCTCTTTTCTTCTCTCAACATAACCCAAAATCAAAATCCTGTCATGTAGCGAGTTTAAAGAGAAAGAGAGGGCAGAGAAAATGACTTGTTATTGTTGGTGTTCTTCTTGTAAGTTTGGTTCACTTCTTGTTATGGCTTTTATTTGGCTTTTGTTGGCTAATGGTTCGTGTCAAAGGAAAGAACCTGTCGTGGTGGGGAAGGTGACGACAGCGATGGGAGATGAATTCAGTGGAGTTTTCAAAAAGACGACGGTGGTGGTGGGTGGCGGGAAGGTTGTTGATCATCCAGAGTGGCATCTCAACTACATGAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCTATCCATAATCGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAGCCCTTAAGAAAGAAACTAAATTAAAAAGCTTTTGTAACAAATTGGGCTTTCAAGATCATGACACCAAGATGCATCGTCTGTGCTATCTTGTATGTATTAACTTTAGGTATTAAATGATGAAAAAACTTATCGGATCCCGATTTTTCCTTCAGAAATTTTAATTAGGATCCTTTCGATAATTTTTTTGTTTTTAGCTTTAAACATCCATATGTGTATTTGCTGTGACTTTTCTTGATCAATCTGTCTCATCTAATTATCATAACC

Coding sequence (CDS)

ATGACTTGTTATTGTTGGTGTTCTTCTTGTAAGTTTGGTTCACTTCTTGTTATGGCTTTTATTTGGCTTTTGTTGGCTAATGGTTCGTGTCAAAGGAAAGAACCTGTCGTGGTGGGGAAGGTGACGACAGCGATGGGAGATGAATTCAGTGGAGTTTTCAAAAAGACGACGGTGGTGGTGGGTGGCGGGAAGGTTGTTGATCATCCAGAGTGGCATCTCAACTACATGAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCTATCCATAATCGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAG

Protein sequence

MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVGGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA

Homology

[Close]

BLAST of Pay0016053 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.4e-04
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 72  HLNYMSKRRVPNGPDPIHNRRAGNSGRPP 101
           +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51  NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Pay0016053 vs. ExPASy TrEMBL
Match: A0A5A7TRB3 (Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00170 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-53
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60
           MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  GGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GGGKV DHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

[Close]

BLAST of Pay0016053 vs. ExPASy TrEMBL
Match: A0A1S3CMA2 (uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-53
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60
           MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  GGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GGGKV DHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

[Close]

BLAST of Pay0016053 vs. ExPASy TrEMBL
Match: A0A0A0KJ25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.1e-45
Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60
           MTCY  CSSCKFGSLL+MAFIWLLLANGSCQRKEPVVVGKVTTA GDE SG+ K+TTV V
Sbjct: 1   MTCY--CSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV 60

Query: 61  G---GGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           G   GGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

[Close]

BLAST of Pay0016053 vs. ExPASy TrEMBL
Match: A0A6J1G3Y8 (uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC111450563 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.1e-25
Identity = 64/96 (66.67%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 9   SCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVG-GGKVVD 68
           SCK  ++ VM FIWLLL NGS QR + V  G  TT    +F G+ K+  VV G GGK V 
Sbjct: 7   SCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGGKDVV 66

Query: 69  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
             EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 67  RSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Pay0016053 vs. ExPASy TrEMBL
Match: A0A6J1KBR7 (uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.2e-24
Identity = 63/96 (65.62%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 9   SCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVG-GGKVVD 68
           SCK  ++ VM FIWLLL NGS QR + V  G  TT    +F G+ K+  VV G GGK V 
Sbjct: 7   SCK--AMAVMGFIWLLLVNGSHQRGQSVATGMGTTMTAAQFGGISKEMEVVGGRGGKDVV 66

Query: 69  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
             EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 67  RSEWHLNYVSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Pay0016053 vs. NCBI nr
Match: XP_008464794.1 (PREDICTED: uncharacterized protein LOC103502597 [Cucumis melo] >KAA0045398.1 Clavata3/esr-related 26, putative isoform 1 [Cucumis melo var. makuwa] >TYK11343.1 Clavata3/esr-related 26, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 2.9e-53
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60
           MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  GGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GGGKV DHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

[Close]

BLAST of Pay0016053 vs. NCBI nr
Match: XP_004146759.1 (uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical protein Csa_003437 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 8.4e-45
Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60
           MTCY  CSSCKFGSLL+MAFIWLLLANGSCQRKEPVVVGKVTTA GDE SG+ K+TTV V
Sbjct: 1   MTCY--CSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV 60

Query: 61  G---GGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           G   GGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

[Close]

BLAST of Pay0016053 vs. NCBI nr
Match: XP_038886261.1 (uncharacterized protein LOC120076488 [Benincasa hispida])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 69/106 (65.09%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 5   CWCSSCKFG-SLLVMAFIWLLLANGSCQRKEPVVVG------KVTTAMGDEFSGVFKKTT 64
           C+  SCK G SL VM FI+LLL NGS QR++PV          +T  M  EFSG+ K+  
Sbjct: 3   CYSPSCKLGNSLAVMVFIFLLLVNGSHQRRQPVAAEMEKATVTITATMTAEFSGISKEMK 62

Query: 65  VVVGGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           VV GG   V HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 63  VVHGGRGKVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 108

[Close]

BLAST of Pay0016053 vs. NCBI nr
Match: XP_022946527.1 (uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 64/96 (66.67%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 9   SCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVG-GGKVVD 68
           SCK  ++ VM FIWLLL NGS QR + V  G  TT    +F G+ K+  VV G GGK V 
Sbjct: 7   SCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGGKDVV 66

Query: 69  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
             EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 67  RSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Pay0016053 vs. NCBI nr
Match: XP_023521565.1 (uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.1 uncharacterized protein LOC111805292 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.3 bits (303), Expect = 4.8e-24
Identity = 63/96 (65.62%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 9   SCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVG-GGKVVD 68
           SCK  ++ VM FIWLLL NGS QR + V  G +T     +F G+ K+  VV G GGK V 
Sbjct: 7   SCK--AMAVMGFIWLLLVNGSHQRGQSVATGMMTITTAAQFGGISKEMEVVGGRGGKDVV 66

Query: 69  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
             EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 67  RSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Pay0016053 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 37/95 (38.95%), Postives = 52/95 (54.74%), Query Frame = 0


Query: 12  FGSLLVMAFIWLLLANGSC--QRKEPVVVGKVTTAMGDEFSGVFKKTTVVVGGGKVVDHP 71
           F +L  +  + LL+ +       KE     ++TTA+    S   +    +  G +  D  
Sbjct: 13  FRTLFTVGVVTLLMIDAFVLQNNKEDDKTKEITTAVNMNNSDAKEIQQELEDGSRNDD-- 72

Query: 72  EWHLNYM-SKRRVPNGPDPIHNRRAGNSGRPPGKA 104
              L+Y+ SKR+VP GPDPIHNRRAGNS RPPG+A
Sbjct: 73  ---LSYVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102

[Close]

BLAST of Pay0016053 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 45.4 bits (106), Expect = 3.1e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 72  HLNYMSKRRVPNGPDPIHNRRAGNSGRPP 101
           +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51  NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

The following BLAST results are available for this feature:

BLAST of Pay0016053 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFL4	4.4e-04	68.97	CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P...	[more]

BLAST of Pay0016053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRB3	1.4e-53	99.03	Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CMA2	1.4e-53	99.03	uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=...	[more]
A0A0A0KJ25	4.1e-45	88.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1	[more]
A0A6J1G3Y8	6.1e-25	66.67	uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC1114505...	[more]
A0A6J1KBR7	5.2e-24	65.63	uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028...	[more]

BLAST of Pay0016053 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464794.1	2.9e-53	99.03	PREDICTED: uncharacterized protein LOC103502597 [Cucumis melo] >KAA0045398.1 Cla...	[more]
XP_004146759.1	8.4e-45	88.68	uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical ...	[more]
XP_038886261.1	1.4e-26	65.09	uncharacterized protein LOC120076488 [Benincasa hispida]	[more]
XP_022946527.1	1.3e-24	66.67	uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3...	[more]
XP_023521565.1	4.8e-24	65.63	uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055....	[more]

BLAST of Pay0016053 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69970.2	1.1e-07	38.95	CLAVATA3/ESR-RELATED 26	[more]
AT3G28455.1	3.1e-05	68.97	CLAVATA3/ESR-RELATED 25	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..103
None	No IPR available	PANTHER	PTHR34277:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 1..103
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0016053.1	Pay0016053.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment