Pay0015631 (gene) Melon (Payzawat) v1

Overview


Name	Pay0015631
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA-directed RNA polymerase subunit beta''
Location	Contig00288_ERROPOS136135: 86209 .. 90423 (+)
RNA-Seq Expression	Pay0015631
Synteny	Pay0015631

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTAACTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTTAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGTGTTCGAAATCAAGATATTGGTATTGGACTTATTAATCGATTCATAACCTTTCAAACCCAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTAGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTTCTTCTAATGGCAAAATCAAATTCAATGAGAATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAATGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGAGTTCGAAAACATATTTATTCTGACTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTGTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGGGACAAAAATTTTATGGTCCGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACGACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTCTTTTTCGTAGAAATAGTATTCTTGCTTTTTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGGGGTGCATTCAATCCTCAAAAAAGAGGATTTGATTGAGTATCGAGGAGTCAAAGACTTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCAGAATCTTCTTCCATAATGGTACGGAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGTGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCAGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATCGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATCAATTTAGTAAAACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATACTTTATGGAAATGGAAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGGGAAATCCGATACTGCGTATATGAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAATAATGAGTCAGATCGCACGAATATCAATCCATTTTTTTCTATTTATTCCAAGACAAGGGTTCCACAATCTCCGAGTCAAAATCAAGGAACTATTCGTACGTTGTTCAATAGAAATAAGGAACGCCAATCTTTGATAATTTTGTCAGCATCGAATTGTTTGCAAATGGATCTATTCAACGATGTAAAAGATTATAATGTCATAAAAGAATCAAGTAAAAAGGATCCTCTAATTTCAATTAGGAATTCGTTAGGACCTTTAGGGGCGGCCCCTCAAATTGTGAATTTTTATTCATTTTATGACTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTAAAACAGACTTTTCAAGTACTTAAATATTATTTAATGGATGAAAACGGGGGGATTTTCAATTCCGATCCATGCAGTAACATCGTTTTCAATACATTTAATTTGAATTGGCATTTTCTGCATCATAATTATCACAATAATTATTGTGAAGAAACACCTACAAGAACAAGAATTAGTCTTGGACATTTTTTTTTTGAAAATGTATGTATAGCCAAAAATAGACCACACCTAAAATCGGGTCAAATTATAATTGTTGAAGTTGATTCTGTAGTAATAAGATTAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGCGAAATGCTTTACGAAGGAGATACTTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTCGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTTCTGAACTAACGATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCAGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAACCCCCCCAAAAAAAATTTTCGAGGGGGAAATGA

mRNA sequence

ATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTAACTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTTAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGTGTTCGAAATCAAGATATTGGTATTGGACTTATTAATCGATTCATAACCTTTCAAACCCAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTAGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTTCTTCTAATGGCAAAATCAAATTCAATGAGAATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAATGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGAGTTCGAAAACATATTTATTCTGACTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTGTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGGGACAAAAATTTTATGGTCCGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACGACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTCTTTTTCGTAGAAATAGTATTCTTGCTTTTTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGGGGTGCATTCAATCCTCAAAAAAGAGGATTTGATTGAGTATCGAGGAGTCAAAGACTTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCAGAATCTTCTTCCATAATGGTACGGAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGTGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCAGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATCGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATCAATTTAGTAAAACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATACTTTATGGAAATGGAAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGGGAAATCCGATACTGCGTATATGAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAATAATGAGTCAGATCGCACGAATATCAATCCATTTTTTTCTATTTATTCCAAGACAAGGGTTCCACAATCTCCGAGTCAAAATCAAGGAACTATTCGTACGTTGTTCAATAGAAATAAGGAACGCCAATCTTTGATAATTTTGTCAGCATCGAATTGTTTGCAAATGGATCTATTCAACGATGTAAAAGATTATAATGTCATAAAAGAATCAAGTAAAAAGGATCCTCTAATTTCAATTAGGAATTCGTTAGGACCTTTAGGGGCGGCCCCTCAAATTGTGAATTTTTATTCATTTTATGACTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTAAAACAGACTTTTCAAGTACTTAAATATTATTTAATGGATGAAAACGGGGGGATTTTCAATTCCGATCCATGCAGTAACATCGTTTTCAATACATTTAATTTGAATTGGCATTTTCTGCATCATAATTATCACAATAATTATTGTGAAGAAACACCTACAAGAACAAGAATTAGTCTTGGACATTTTTTTTTTGAAAATGTATGTATAGCCAAAAATAGACCACACCTAAAATCGGGTCAAATTATAATTGTTGAAGTTGATTCTGTAGTAATAAGATTAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGCGAAATGCTTTACGAAGGAGATACTTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTCGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTTCTGAACTAACGATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCAGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAACCCCCCCAAAAAAAATTTTCGAGGGGGAAATGA

Coding sequence (CDS)

ATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTAACTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTTAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGTGTTCGAAATCAAGATATTGGTATTGGACTTATTAATCGATTCATAACCTTTCAAACCCAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTAGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTTCTTCTAATGGCAAAATCAAATTCAATGAGAATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAATGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGAGTTCGAAAACATATTTATTCTGACTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTGTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGGGACAAAAATTTTATGGTCCGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACGACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTCTTTTTCGTAGAAATAGTATTCTTGCTTTTTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGGGGTGCATTCAATCCTCAAAAAAGAGGATTTGATTGAGTATCGAGGAGTCAAAGACTTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCAGAATCTTCTTCCATAATGGTACGGAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGTGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCAGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATCGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATCAATTTAGTAAAACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATACTTTATGGAAATGGAAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGGGAAATCCGATACTGCGTATATGAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAATAATGAGTCAGATCGCACGAATATCAATCCATTTTTTTCTATTTATTCCAAGACAAGGGTTCCACAATCTCCGAGTCAAAATCAAGGAACTATTCGTACGTTGTTCAATAGAAATAAGGAACGCCAATCTTTGATAATTTTGTCAGCATCGAATTGTTTGCAAATGGATCTATTCAACGATGTAAAAGATTATAATGTCATAAAAGAATCAAGTAAAAAGGATCCTCTAATTTCAATTAGGAATTCGTTAGGACCTTTAGGGGCGGCCCCTCAAATTGTGAATTTTTATTCATTTTATGACTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTAAAACAGACTTTTCAAGTACTTAAATATTATTTAATGGATGAAAACGGGGGGATTTTCAATTCCGATCCATGCAGTAACATCGTTTTCAATACATTTAATTTGAATTGGCATTTTCTGCATCATAATTATCACAATAATTATTGTGAAGAAACACCTACAAGAACAAGAATTAGTCTTGGACATTTTTTTTTTGAAAATGTATGTATAGCCAAAAATAGACCACACCTAAAATCGGGTCAAATTATAATTGTTGAAGTTGATTCTGTAGTAATAAGATTAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGCGAAATGCTTTACGAAGGAGATACTTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTCGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTTCTGAACTAACGATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCAGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAACCCCCCCAAAAAAAATTTTCGAGGGGGAAATGA

Protein sequence

MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK

Homology

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BLAST of Pay0015631 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2669.0 bits (6917), Expect = 0.0e+00
Identity = 1334/1362 (97.94%), Postives = 1345/1362 (98.75%), Query Frame = 0


Query: 43   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
            MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1    MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
            LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61   LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
            PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 282
            EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP
Sbjct: 181  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 240

Query: 283  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 342
            ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW
Sbjct: 241  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 300

Query: 343  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 402
            ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA S
Sbjct: 301  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 360

Query: 403  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
            NGKIKFNE+LVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361  NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
            EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 582
            LSGGSCGCS+VPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNE+G
Sbjct: 481  LSGGSCGCSLVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENG 540

Query: 583  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 642
            IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS
Sbjct: 541  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 600

Query: 643  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 702
            IEIPING+FRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY
Sbjct: 601  IEIPINGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 762
            QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI
Sbjct: 661  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 822
            ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF
Sbjct: 721  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 780

Query: 823  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 882
            VRPVIIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTC 840

Query: 883  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 942
            LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAY+RKRKDPSGSGLIFN
Sbjct: 841  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFN 900

Query: 943  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 1002
            NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQ+DLFND
Sbjct: 901  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFND 960

Query: 1003 VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1062
            VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQLDNLKQ
Sbjct: 961  VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQ 1020

Query: 1063 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1122
             FQVLKYYLMDENGGI NSDPC NIVFNTFNLNWHFLH NYHNNYCEETP  TRISLG F
Sbjct: 1021 IFQVLKYYLMDENGGILNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETP--TRISLGQF 1080

Query: 1123 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1182
            FFENVCIAKNRPHLKSGQIIIV+VDS+VIR AKPYLATSGATVHRHYGE+LYEGDTLVTF
Sbjct: 1081 FFENVCIAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTF 1140

Query: 1183 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1242
            IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+EL
Sbjct: 1141 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAEL 1200

Query: 1243 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1302
            TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL
Sbjct: 1201 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1260

Query: 1303 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1362
            RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL
Sbjct: 1261 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1320

Query: 1363 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK 1405
            KENVVLGGMIPVGTGFRELAHRSRQHNNIPLE P KK   G+
Sbjct: 1321 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKIFEGE 1360

[Close]

BLAST of Pay0015631 vs. ExPASy Swiss-Prot
Match: Q0ZJ30 (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2277.7 bits (5901), Expect = 0.0e+00
Identity = 1153/1361 (84.72%), Postives = 1220/1361 (89.64%), Query Frame = 0


Query: 43   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
            M VLM ERA+LVFHNKVIDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1    MGVLMTERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 103  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
            LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61   LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
             NFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121  TNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 282
            EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSP N MIP
Sbjct: 181  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMIP 240

Query: 283  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 342
            ERIFIQTLIGRVLADDIYMGPRCI +RNQDIGIGL+NRFITFQ Q ISIRTPFTC+STSW
Sbjct: 241  ERIFIQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFQAQTISIRTPFTCKSTSW 300

Query: 343  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 402
            ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RA S
Sbjct: 301  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360

Query: 403  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
            NGKIKFNE+ VHPTRTRHGHPAFLCYIDLYVTIESE IIHNV IPPKS LLVQNDQYVES
Sbjct: 361  NGKIKFNEDWVHPTRTRHGHPAFLCYIDLYVTIESEGIIHNVNIPPKSFLLVQNDQYVES 420

Query: 463  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
            EQVIAEIRAGTYT N KERVRKHIYSDSEGEMHWSTDVYHAPEFTY NVHLLPKTSHLWI
Sbjct: 421  EQVIAEIRAGTYTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480

Query: 523  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 582
            LSGGSC  S+VPFS++KDQDQ++V SL VERRYIS+ SV ND+V  +F+  DLSGK E  
Sbjct: 481  LSGGSCRFSIVPFSIHKDQDQMSVRSLSVERRYISNPSVTNDQVIHEFFSSDLSGKKEGR 540

Query: 583  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 642
            IP YSELN I+ TG+ NL  PAI H NSDLLAKRRRN FII F+S+QE EKEL PPSGIS
Sbjct: 541  IPAYSELNRIIYTGRYNLIDPAILHENSDLLAKRRRNRFIIPFQSIQEGEKELMPPSGIS 600

Query: 643  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 702
            IEIPING+FRRNSILA+FDDP+YRRNSSGITKYGTI  HSI+KKEDLIEYRGVK+FKPKY
Sbjct: 601  IEIPINGIFRRNSILAYFDDPRYRRNSSGITKYGTIEAHSIVKKEDLIEYRGVKEFKPKY 660

Query: 703  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 762
              QMKVDRFFFIPEEVHILP S+SIMVRNNSIIGV TR+TL+ RSRV GLVRVE+KKKRI
Sbjct: 661  --QMKVDRFFFIPEEVHILPGSASIMVRNNSIIGVDTRITLNTRSRVSGLVRVERKKKRI 720

Query: 763  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 822
            ELKIFSGDI FPGE +KISRH GILIPP   KKNSK+SKK KNWIYVQ ITPTKKKYFV 
Sbjct: 721  ELKIFSGDIQFPGETNKISRHIGILIPPGTRKKNSKESKKLKNWIYVQGITPTKKKYFVL 780

Query: 823  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 882
            VRPV+ YE+ADGINL  LFPQDLLQERDN+ L+VVNYILYGNGKPIRGIS TSIQLVRTC
Sbjct: 781  VRPVVTYEIADGINLATLFPQDLLQERDNMHLQVVNYILYGNGKPIRGISDTSIQLVRTC 840

Query: 883  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 942
            L+LNW ++KKSS IE   ASF+EV TNGL+R+FL I+L KS  +Y  KR DPS SGLI +
Sbjct: 841  LVLNWYQEKKSSPIEKTHASFMEVRTNGLIRDFLTINLVKSYISYTGKRNDPSSSGLIAD 900

Query: 943  NESDRTNINPFFSIYSKTRVP----QSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMD 1002
            N SD TNINPF+SIY K R+     Q   +NQGTIRTL NRNKE QSLIILS+SNC +M 
Sbjct: 901  NGSDHTNINPFYSIYPKERIQQLLRQRQKKNQGTIRTLLNRNKECQSLIILSSSNCSRMG 960

Query: 1003 LFNDVKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLD 1062
             FNDVK +NVIKES KKD  I IRNSLGPLG A QI NFYSFY LITHN I +TKY QLD
Sbjct: 961  PFNDVKYHNVIKESIKKDTPIPIRNSLGPLGTALQITNFYSFYHLITHNHILVTKYFQLD 1020

Query: 1063 NLKQTFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRIS 1122
            N KQTFQ LKYYLMDENG  +N DPCSNI+ N FNLNW+FLHH    NYCEE  T T IS
Sbjct: 1021 NFKQTFQTLKYYLMDENGITYNPDPCSNIILNPFNLNWYFLHH----NYCEE--TSTIIS 1080

Query: 1123 LGHFFFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDT 1182
            LG F  ENVCIAKN PHLKSGQ++IV+VDSVVIR AKPYLAT GATVH HYGE+LYEGDT
Sbjct: 1081 LGQFICENVCIAKNGPHLKSGQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGDT 1140

Query: 1183 LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLI 1242
            LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM+LEKR+EGWNE ITRILGIPWGF I
Sbjct: 1141 LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNEHITRILGIPWGFFI 1200

Query: 1243 GSELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL 1302
            G+ELTI QSRISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL
Sbjct: 1201 GAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL 1260

Query: 1303 IGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDW 1362
            IGLLRAERTGRA EEAICYR +LLGIT+ASLNTQSFISEASFQETARVLAKAAL GRIDW
Sbjct: 1261 IGLLRAERTGRAFEEAICYRTILLGITRASLNTQSFISEASFQETARVLAKAALWGRIDW 1320

Query: 1363 LRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKK 1400
            L+GLKENVVLGGMIPVGTGF+ L HRSRQHNNIPLE   KK
Sbjct: 1321 LKGLKENVVLGGMIPVGTGFKGLVHRSRQHNNIPLEMETKK 1353

[Close]

BLAST of Pay0015631 vs. ExPASy Swiss-Prot
Match: B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2274.2 bits (5892), Expect = 0.0e+00
Identity = 1148/1365 (84.10%), Postives = 1231/1365 (90.18%), Query Frame = 0


Query: 43   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
            MEVLMAERA+LVFHNK IDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1    MEVLMAERANLVFHNKAIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 103  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
            LGIDDLLTIPSKGWLVQDAEQQSLILEKH+HYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61   LGIDDLLTIPSKGWLVQDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
             NFRMT+PFNPVHIMSFSGARGN SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121  LNFRMTEPFNPVHIMSFSGARGNTSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 282
            EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGI VSP N M+P
Sbjct: 181  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMP 240

Query: 283  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 342
            ERIFIQT IGRVLAD+IYMG RCI +RNQDIGIGL NRFITF+TQ ISIRTPFTCRSTSW
Sbjct: 241  ERIFIQTFIGRVLADNIYMGLRCIAIRNQDIGIGLANRFITFRTQTISIRTPFTCRSTSW 300

Query: 343  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 402
            ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RA S
Sbjct: 301  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360

Query: 403  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
            NGKIKFNE+LVHP RTRHGHPAFLCYIDLYVTI+S+DIIHNVTIPPKS LLVQNDQYVES
Sbjct: 361  NGKIKFNEDLVHPIRTRHGHPAFLCYIDLYVTIKSQDIIHNVTIPPKSFLLVQNDQYVES 420

Query: 463  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
            EQVIAEIRAG YTLN KE+VRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421  EQVIAEIRAGAYTLNFKEKVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 582
            LSG SC  S+VPFSL+KDQDQ+NVHSL V+RRYISS SVNND+V  KF+  D SGK ESG
Sbjct: 481  LSGSSCRSSIVPFSLHKDQDQMNVHSLSVKRRYISSPSVNNDQVKHKFFSSDFSGKKESG 540

Query: 583  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 642
            IPDYSELN  +CTG  NL Y  I + NSDLLAKRRRN FII F+S+QEREKEL   S IS
Sbjct: 541  IPDYSELNRSICTGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAIS 600

Query: 643  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 702
            IEIPING+FRRNS+ A+FDDPQYR+ SSGITKYG IGVHSI+KKEDLIEYRGVK+FKPKY
Sbjct: 601  IEIPINGIFRRNSVFAYFDDPQYRKKSSGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKY 660

Query: 703  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 762
              Q KVDRFFFIPEEV+ILPESSS+MVRNNSIIGV T++ L+ RSRVGGLVRVE+KKK++
Sbjct: 661  --QTKVDRFFFIPEEVYILPESSSLMVRNNSIIGVDTQIALNTRSRVGGLVRVERKKKKM 720

Query: 763  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 822
            ELKIFSGDIHFPGE DKISRH+ ILIPP  VK NSK+SKK KNWIY+Q ITPTKKKYFV 
Sbjct: 721  ELKIFSGDIHFPGETDKISRHSDILIPPGTVKTNSKESKKVKNWIYIQRITPTKKKYFVL 780

Query: 823  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 882
            VRPVIIYE+A+GINL  LFPQDLLQE+DNL+LRVVNYILYG GKPIRGIS TSIQLVRTC
Sbjct: 781  VRPVIIYEIANGINLETLFPQDLLQEKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTC 840

Query: 883  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYM-RKRKDPSGSGLIF 942
            L+LNWD+DKKSSSIE+ARA+FVE+STNGL+R+FLRI+L K   +Y+ RKR DPSGS  I 
Sbjct: 841  LVLNWDQDKKSSSIEEARAAFVEISTNGLIRDFLRINLVKFHISYIGRKRNDPSGSEPIS 900

Query: 943  NNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFN 1002
            NN SDRTNINPF+ IYSKTRV QS  QNQGTI TL N NKE QSLIILS+SNC QMD FN
Sbjct: 901  NNGSDRTNINPFYPIYSKTRVQQSLKQNQGTISTLLNINKECQSLIILSSSNCFQMDPFN 960

Query: 1003 DVKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY--DLITHNPISLTKYLQLDN 1062
            DVK +NVIKES K+DP+I IRNSLGPLG A QI NFY FY  +LITHN IS+TKY +L N
Sbjct: 961  DVKHHNVIKESIKRDPIIPIRNSLGPLGTALQIANFYLFYHLNLITHNQISVTKYSKLYN 1020

Query: 1063 LKQTFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISL 1122
            LKQTFQVLKYYLMDENG I N DPCSN V N FNLNW+FLHHNY  ++       T ISL
Sbjct: 1021 LKQTFQVLKYYLMDENGRIVNPDPCSNSVLNPFNLNWYFLHHNYCESFF------TIISL 1080

Query: 1123 GHFFFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTL 1182
            G F  EN+C+AKN PHLKSGQ+IIV +DSVVIR AKPYLAT GATVH HYGE+LYEG+TL
Sbjct: 1081 GQFICENLCMAKNGPHLKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGNTL 1140

Query: 1183 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG 1242
            VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE ITRILGIPWGFLIG
Sbjct: 1141 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRVEGWNECITRILGIPWGFLIG 1200

Query: 1243 SELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI 1302
            +ELTIVQSRISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI
Sbjct: 1201 TELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI 1260

Query: 1303 GLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWL 1362
            GLLRAERTGRALEEAICY A+LLGIT+ASLNTQSFISEASFQET RVLAKAALRGRIDWL
Sbjct: 1261 GLLRAERTGRALEEAICYGAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWL 1320

Query: 1363 RGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK 1405
            +GLKENVVLGGMIPVGTGF+ L   SRQH NIPL+  +K    G+
Sbjct: 1321 KGLKENVVLGGMIPVGTGFKGLVQGSRQHKNIPLKTKKKNLFEGE 1357

[Close]

BLAST of Pay0015631 vs. ExPASy Swiss-Prot
Match: Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2266.9 bits (5873), Expect = 0.0e+00
Identity = 1141/1365 (83.59%), Postives = 1227/1365 (89.89%), Query Frame = 0


Query: 43   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
            MEVLMAER +LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1    MEVLMAERVNLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 103  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
            LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMN
Sbjct: 61   LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMN 120

Query: 163  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
            PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 282
            EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRG+ VSP N M+P
Sbjct: 181  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGVSVSPRNGMMP 240

Query: 283  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 342
            ERIFIQTLIGRVLADDIYMGPRCI +RNQDIGIGL+NRFITF+TQPISIRTPFTCRSTSW
Sbjct: 241  ERIFIQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSW 300

Query: 343  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 402
            ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RA S
Sbjct: 301  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360

Query: 403  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
            NGKIKFN++LVHPTRTRHGHPAFLC IDLYVTIESEDI+HNVTIPPKS LLVQN+QYVES
Sbjct: 361  NGKIKFNDDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVTIPPKSFLLVQNNQYVES 420

Query: 463  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
            EQVIAEIRAGTYT NLKERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421  EQVIAEIRAGTYTFNLKERVRKHIYSESEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGK-NES 582
            LSGGSC  S VPFSLYKDQDQ+N+ S   ERRYISSLSVNND++  +    D SGK  E 
Sbjct: 481  LSGGSCRSSRVPFSLYKDQDQMNLRSTERERRYISSLSVNNDQMRYELCSSDFSGKIKED 540

Query: 583  GIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGI 642
             IPDYSELN I+     NL YP  F  NSDLLAKRRRN F+I  +S+QER+KEL P SGI
Sbjct: 541  RIPDYSELNRIISIVHCNLKYPTTFDENSDLLAKRRRNRFLIPLQSIQERKKELMPHSGI 600

Query: 643  SIEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPK 702
            SIE+PING+ RRNSILA+FDDP+YRR SSGI KYGT+GVHS++KKEDLIEYRG+K+FK K
Sbjct: 601  SIELPINGILRRNSILAYFDDPRYRRKSSGIIKYGTLGVHSVVKKEDLIEYRGIKEFKQK 660

Query: 703  YQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKR 762
               QMK+D FFFIPEEVHI PESSSIMVRNNS+IGV TR+ L+ RSRVGGLVRVE+KKKR
Sbjct: 661  --CQMKLDPFFFIPEEVHIFPESSSIMVRNNSLIGVDTRIALNTRSRVGGLVRVERKKKR 720

Query: 763  IELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFV 822
            IELKIFSGDIHFPGE DKISRH+GILIPP   K N K+SKK KNWIYVQ ITPTKKKYFV
Sbjct: 721  IELKIFSGDIHFPGETDKISRHSGILIPPGTGKTNFKESKKWKNWIYVQRITPTKKKYFV 780

Query: 823  FVRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRT 882
             VRPV+ YE+ DGINL  LFP DLLQERDN++LRVVNYI+Y NGKPIRGIS TSIQLVRT
Sbjct: 781  LVRPVVTYEVLDGINLATLFPPDLLQERDNMQLRVVNYIVYRNGKPIRGISDTSIQLVRT 840

Query: 883  CLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLI- 942
            CL+LNWD+DKKSSSIE+A  SFVEVSTNGL+R+FLRIDL K   +Y+RKR DPSGSGLI 
Sbjct: 841  CLILNWDQDKKSSSIEEAHTSFVEVSTNGLIRDFLRIDLVKFPISYLRKRNDPSGSGLIS 900

Query: 943  -FNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDL 1002
              +N SD TN NPF   YSKT++ Q  SQNQGTIRTL N+NKE  SLIILS+SNC +M  
Sbjct: 901  DSDNVSDHTNSNPF---YSKTKIQQLLSQNQGTIRTLLNKNKECPSLIILSSSNCFRMGP 960

Query: 1003 FNDVKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDN 1062
            FN  K +NVIKES KKDP+I IRNS+GPLG   Q VNFYSFY LITHNPI +TKYLQL+N
Sbjct: 961  FNAGKYHNVIKESIKKDPIIKIRNSIGPLGTVLQFVNFYSFYYLITHNPILVTKYLQLEN 1020

Query: 1063 LKQTFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISL 1122
            LKQTFQV+ YYLMDENG I N D CSNIV N+FNLNW+FLHHNY++NY EE    T ISL
Sbjct: 1021 LKQTFQVINYYLMDENGRILNPDSCSNIVLNSFNLNWYFLHHNYYHNYFEE--RSTIISL 1080

Query: 1123 GHFFFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTL 1182
            G F  ENVCI+KN PHLKSGQ++IV+VDSVVIR AKPYLAT GATVH HYGE+LYEGDTL
Sbjct: 1081 GQFICENVCISKNGPHLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTL 1140

Query: 1183 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG 1242
            VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM+LEKRIEGWNE I +ILGIPWGFLIG
Sbjct: 1141 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNEHIKKILGIPWGFLIG 1200

Query: 1243 SELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI 1302
            +ELTIVQSRISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVF PGELI
Sbjct: 1201 AELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELI 1260

Query: 1303 GLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWL 1362
            GLLRA RTGRALEE+ICYRA+LLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1261 GLLRAARTGRALEESICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 1320

Query: 1363 RGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK 1405
            +GLKENVV+GGMIPVGTGF+ L HRSRQH NIPL+  +K F  G+
Sbjct: 1321 KGLKENVVIGGMIPVGTGFKGLVHRSRQHKNIPLKTKKKNFFEGE 1358

[Close]

BLAST of Pay0015631 vs. ExPASy Swiss-Prot
Match: B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2261.1 bits (5858), Expect = 0.0e+00
Identity = 1139/1354 (84.12%), Postives = 1225/1354 (90.47%), Query Frame = 0


Query: 47   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 106
            MAERA+LVFHNKVIDGTAIKRLISRLID FGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1    MAERANLVFHNKVIDGTAIKRLISRLIDRFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 107  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 166
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 167  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 226
            +TDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  VTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 227  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 286
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSP NR +PERIF
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPKNRTMPERIF 240

Query: 287  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 346
            IQTLIGRVLADDIYMGPRCI +RNQDIGIGL+NRFITF+TQ ISIRTPFTCRSTSWICRL
Sbjct: 241  IQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSWICRL 300

Query: 347  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 406
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+R+ SNGKI
Sbjct: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRSPSNGKI 360

Query: 407  KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 466
            KFNE+LVHPTRTRHGHPAFLCYIDL V IESEDIIHNVTIPPKS LLVQNDQYVESEQVI
Sbjct: 361  KFNEDLVHPTRTRHGHPAFLCYIDLSVVIESEDIIHNVTIPPKSFLLVQNDQYVESEQVI 420

Query: 467  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 526
            AEIRAGTYTLN KERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421  AEIRAGTYTLNYKERVRKHIYSNSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 527  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 586
            S   S+VPFSL+KDQDQ+N+HSL VE+  ISSL+VNND+   KF+  + S K + GIPDY
Sbjct: 481  SSRSSLVPFSLHKDQDQMNIHSLSVEQESISSLAVNNDQGRHKFFSSNFSDKKKCGIPDY 540

Query: 587  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 646
            SE + IL TG  NL Y A  H NSDLLAKRRRN FII F+S+QE+EKEL P SGISIEIP
Sbjct: 541  SEFHRILDTGHCNLIYFASLHENSDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIP 600

Query: 647  INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 706
            ING+FRRNSILAFFDDP+YRR SSGI KYGTIG HSI+KKED+IEYRGVK FK KY  QM
Sbjct: 601  INGIFRRNSILAFFDDPRYRRKSSGILKYGTIGAHSIVKKEDVIEYRGVKKFKTKY--QM 660

Query: 707  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 766
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGV TR+TL+IRS+VGGLVRVE+KKK IEL+I
Sbjct: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVERKKKSIELQI 720

Query: 767  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 826
            FSGDIHFPG+ DKISRH+GILIPP R K NSK+SKK KNWIYVQ ITPTKKKYFV VRPV
Sbjct: 721  FSGDIHFPGKTDKISRHSGILIPPGRGKTNSKESKKLKNWIYVQRITPTKKKYFVLVRPV 780

Query: 827  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 886
              YE+ADGINL  LFPQDL +E+DN++LRVVNYILYGNGKP+RGI  TSIQLVRTCL+LN
Sbjct: 781  ATYEIADGINLATLFPQDLFREKDNMQLRVVNYILYGNGKPVRGIFDTSIQLVRTCLVLN 840

Query: 887  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDT--AYMRKRKDPSGSGLIFNNE 946
            WD+D KSSS+E+ R  FVEVSTN L+R+FLRIDL KS +  +Y+RKR DPSGSGLI +N 
Sbjct: 841  WDQDNKSSSVEEVRTFFVEVSTNSLIRDFLRIDLVKSQSHISYIRKRNDPSGSGLISDNG 900

Query: 947  SDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVK 1006
            SDR  INPF   Y K R+ QS S+N GTIRTL NRNKE QSLIILS+SNC QM  FN VK
Sbjct: 901  SDR--INPF---YYKERIQQSLSKNHGTIRTLLNRNKECQSLIILSSSNCFQMGPFNHVK 960

Query: 1007 DYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTF 1066
             +NVIK+S KKDPLI IRNSLGP+G A QI NFYS Y LITHN IS+TKY QLDNL Q F
Sbjct: 961  YHNVIKQSIKKDPLIPIRNSLGPVGTAIQIANFYSIYHLITHNQISVTKYFQLDNLNQIF 1020

Query: 1067 QVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFF 1126
            +V+KYYLMDE G ++N DPCSNI+ N FNLNW+FL+ NYH+NYCEE  T T ISLG F  
Sbjct: 1021 EVIKYYLMDETGRVYNPDPCSNIILNPFNLNWYFLYQNYHHNYCEE--TSTIISLGQFIC 1080

Query: 1127 ENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTFIY 1186
            ENVC+AKN PHLKSGQ++IV+VDSVVIR AKPYLAT GATVH HYGE+LYEGDTLVTFIY
Sbjct: 1081 ENVCLAKNGPHLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIY 1140

Query: 1187 EKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTI 1246
            EKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWN+RITRILGIPWGFLIG+ELTI
Sbjct: 1141 EKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRVEGWNKRITRILGIPWGFLIGAELTI 1200

Query: 1247 VQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1306
            VQSRISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRA
Sbjct: 1201 VQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRA 1260

Query: 1307 ERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKE 1366
            ERTGRALEEAICYRA+LLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKE
Sbjct: 1261 ERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 1320

Query: 1367 NVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQK 1399
            NVVLGGMIP GTGF+ L H SRQH +I LE  +K
Sbjct: 1321 NVVLGGMIPAGTGFKGLVHCSRQHTSILLETKKK 1345

[Close]

BLAST of Pay0015631 vs. ExPASy TrEMBL
Match: A0A7T3QNJ7 (RNA polymerase beta'' subunit OS=Benincasa hispida OX=102211 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 2722.2 bits (7055), Expect = 0.0e+00
Identity = 1365/1404 (97.22%), Postives = 1380/1404 (98.29%), Query Frame = 0


Query: 1    MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
            M FVLSGSTRTIGPEFLRESRSRKGSFLII+SNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1    MKFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61   DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
            DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61   DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121  AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180
            AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS
Sbjct: 121  AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180

Query: 181  GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240
            GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV
Sbjct: 181  GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240

Query: 241  RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIFIQTLIGRVLADDIY 300
            RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSPGNRMIPERIFIQTLIGRVLADDIY
Sbjct: 241  RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300

Query: 301  MGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 360
            MGPRCIG+RNQDIGIGLINRFITFQTQPI IRTPFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 301  MGPRCIGIRNQDIGIGLINRFITFQTQPICIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 360

Query: 361  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKIKFNENLVHPTRTRH 420
            GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKIKFNE+LVHPTRTRH
Sbjct: 361  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420

Query: 421  GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480
            GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE
Sbjct: 421  GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480

Query: 481  RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540
            RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD
Sbjct: 481  RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540

Query: 541  QDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDYSELNPILCTGQSNL 600
            QDQINVHSL VERRYISSLSVNN+KV QKFYG DLSGKNESGIPDYSELNPILC GQSNL
Sbjct: 541  QDQINVHSLSVERRYISSLSVNNEKVRQKFYGLDLSGKNESGIPDYSELNPILCMGQSNL 600

Query: 601  TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIPINGLFRRNSILAFF 660
            TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEL PPSGISIEIPINGLFRRNSILA+F
Sbjct: 601  TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGLFRRNSILAYF 660

Query: 661  DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720
            DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI
Sbjct: 661  DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720

Query: 721  LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 780
            LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMDKI
Sbjct: 721  LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIYFPGEMDKI 780

Query: 781  SRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKL 840
            SRHNGILIPPERVKKNSKKSKK KNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV L
Sbjct: 781  SRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 840

Query: 841  FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDAR 900
            FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIE+AR
Sbjct: 841  FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEAR 900

Query: 901  ASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESDRTNINPFFSIYSKT 960
            ASFVEV+TNGLVRNFLRIDL KSDT+Y+RKRKDPSGSGLIFNNESDRTNINPFFSIYSKT
Sbjct: 901  ASFVEVTTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKT 960

Query: 961  RVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPLIS 1020
            RVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFND KDY+VIKESSKKDPLI 
Sbjct: 961  RVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDGKDYHVIKESSKKDPLIE 1020

Query: 1021 IRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGIFN 1080
            IRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGI N
Sbjct: 1021 IRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGILN 1080

Query: 1081 SDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFENVCIAKNRPHLKSGQ 1140
            SDPCSNIVFNTFNLNWHFLHHNYH NYCEETP  TRISLG FFFENVCIAKNRPHLKSGQ
Sbjct: 1081 SDPCSNIVFNTFNLNWHFLHHNYHPNYCEETP--TRISLGQFFFENVCIAKNRPHLKSGQ 1140

Query: 1141 IIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEKSRSGDITQGLPKVE 1200
            IIIV+VDSVVIR AKPYLATSGATVHRHYGE+LYEGDTLVTFIYEKSRSGDITQGLPKVE
Sbjct: 1141 IIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVE 1200

Query: 1201 QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQSRISLVNKIQKVYR 1260
            QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQSRISLVNKIQKVYR
Sbjct: 1201 QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYR 1260

Query: 1261 SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV 1320
            SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV
Sbjct: 1261 SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV 1320

Query: 1321 LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRE 1380
            LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRE
Sbjct: 1321 LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRE 1380

Query: 1381 LAHRSRQHNNIPLEPPQKKFSRGK 1405
            LAHRSRQHNNIPLE PQKKF  G+
Sbjct: 1381 LAHRSRQHNNIPLETPQKKFFEGE 1402

[Close]

BLAST of Pay0015631 vs. ExPASy TrEMBL
Match: A0A249RZW9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2719.1 bits (7047), Expect = 0.0e+00
Identity = 1357/1362 (99.63%), Postives = 1358/1362 (99.71%), Query Frame = 0


Query: 43   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
            MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1    MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
            LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61   LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
            PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 282
            EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP
Sbjct: 181  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 240

Query: 283  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 342
            ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW
Sbjct: 241  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 300

Query: 343  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 402
            ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS
Sbjct: 301  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 360

Query: 403  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
            NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
            EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 582
            LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG
Sbjct: 481  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 540

Query: 583  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 642
            IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS
Sbjct: 541  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 600

Query: 643  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 702
            IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY
Sbjct: 601  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 762
            QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI
Sbjct: 661  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 822
            ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF
Sbjct: 721  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 780

Query: 823  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 882
            VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 840

Query: 883  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 942
            LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN
Sbjct: 841  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 900

Query: 943  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 1002
            NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND
Sbjct: 901  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 960

Query: 1003 VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1062
            VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ
Sbjct: 961  VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1020

Query: 1063 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1122
            TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF
Sbjct: 1021 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1080

Query: 1123 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1182
            FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF
Sbjct: 1081 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1140

Query: 1183 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1242
            IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL
Sbjct: 1141 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1200

Query: 1243 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1302
            TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL
Sbjct: 1201 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1260

Query: 1303 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1362
            RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL
Sbjct: 1261 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1320

Query: 1363 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK 1405
            KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPP KK   G+
Sbjct: 1321 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362

[Close]

BLAST of Pay0015631 vs. ExPASy TrEMBL
Match: A0A286NFX2 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2719.1 bits (7047), Expect = 0.0e+00
Identity = 1357/1362 (99.63%), Postives = 1358/1362 (99.71%), Query Frame = 0


Query: 43   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
            MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1    MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
            LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61   LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
            PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 282
            EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP
Sbjct: 181  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 240

Query: 283  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 342
            ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW
Sbjct: 241  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 300

Query: 343  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 402
            ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS
Sbjct: 301  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 360

Query: 403  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
            NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
            EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 582
            LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG
Sbjct: 481  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 540

Query: 583  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 642
            IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS
Sbjct: 541  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 600

Query: 643  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 702
            IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY
Sbjct: 601  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 762
            QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI
Sbjct: 661  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 822
            ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF
Sbjct: 721  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 780

Query: 823  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 882
            VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 840

Query: 883  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 942
            LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN
Sbjct: 841  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 900

Query: 943  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 1002
            NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND
Sbjct: 901  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 960

Query: 1003 VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1062
            VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ
Sbjct: 961  VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1020

Query: 1063 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1122
            TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF
Sbjct: 1021 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1080

Query: 1123 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1182
            FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF
Sbjct: 1081 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1140

Query: 1183 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1242
            IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL
Sbjct: 1141 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1200

Query: 1243 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1302
            TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL
Sbjct: 1201 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1260

Query: 1303 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1362
            RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL
Sbjct: 1261 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1320

Query: 1363 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK 1405
            KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPP KK   G+
Sbjct: 1321 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362

[Close]

BLAST of Pay0015631 vs. ExPASy TrEMBL
Match: A0A249RYP9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. momordica OX=2034244 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2719.1 bits (7047), Expect = 0.0e+00
Identity = 1357/1362 (99.63%), Postives = 1358/1362 (99.71%), Query Frame = 0


Query: 43   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
            MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1    MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
            LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61   LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
            PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 282
            EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP
Sbjct: 181  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 240

Query: 283  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 342
            ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW
Sbjct: 241  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 300

Query: 343  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 402
            ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS
Sbjct: 301  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 360

Query: 403  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
            NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
            EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 582
            LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG
Sbjct: 481  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 540

Query: 583  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 642
            IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS
Sbjct: 541  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 600

Query: 643  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 702
            IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY
Sbjct: 601  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 762
            QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI
Sbjct: 661  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 822
            ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF
Sbjct: 721  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 780

Query: 823  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 882
            VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 840

Query: 883  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 942
            LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN
Sbjct: 841  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 900

Query: 943  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 1002
            NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND
Sbjct: 901  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 960

Query: 1003 VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1062
            VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ
Sbjct: 961  VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1020

Query: 1063 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1122
            TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF
Sbjct: 1021 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1080

Query: 1123 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1182
            FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF
Sbjct: 1081 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1140

Query: 1183 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1242
            IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL
Sbjct: 1141 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1200

Query: 1243 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1302
            TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL
Sbjct: 1201 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1260

Query: 1303 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1362
            RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL
Sbjct: 1261 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1320

Query: 1363 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK 1405
            KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPP KK   G+
Sbjct: 1321 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362

[Close]

BLAST of Pay0015631 vs. ExPASy TrEMBL
Match: A0A249RXP5 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2716.8 bits (7041), Expect = 0.0e+00
Identity = 1356/1362 (99.56%), Postives = 1357/1362 (99.63%), Query Frame = 0


Query: 43   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
            MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1    MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
            LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61   LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
            PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 282
            EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP
Sbjct: 181  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 240

Query: 283  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 342
            ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW
Sbjct: 241  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 300

Query: 343  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 402
            ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS
Sbjct: 301  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 360

Query: 403  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
            NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
            EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 582
            LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG
Sbjct: 481  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 540

Query: 583  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 642
            IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS
Sbjct: 541  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 600

Query: 643  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 702
            IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY
Sbjct: 601  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 762
            QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI
Sbjct: 661  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 822
            ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF
Sbjct: 721  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 780

Query: 823  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 882
            VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 840

Query: 883  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 942
            LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN
Sbjct: 841  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 900

Query: 943  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 1002
            NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND
Sbjct: 901  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 960

Query: 1003 VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1062
            VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ
Sbjct: 961  VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1020

Query: 1063 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1122
            TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF
Sbjct: 1021 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1080

Query: 1123 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1182
            FFENVCIAKNRPHLKSGQIIIVEVDSVVIR AKPYLATSGATVHRHYGEMLYEGDTLVTF
Sbjct: 1081 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTF 1140

Query: 1183 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1242
            IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL
Sbjct: 1141 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1200

Query: 1243 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1302
            TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL
Sbjct: 1201 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1260

Query: 1303 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1362
            RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL
Sbjct: 1261 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1320

Query: 1363 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK 1405
            KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPP KK   G+
Sbjct: 1321 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362

[Close]

BLAST of Pay0015631 vs. NCBI nr
Match: YP_010131084.1 (RNA polymerase beta'' subunit [Benincasa hispida] >QPZ75731.1 RNA polymerase beta'' subunit [Benincasa hispida])

HSP 1 Score: 2722.2 bits (7055), Expect = 0.0e+00
Identity = 1365/1404 (97.22%), Postives = 1380/1404 (98.29%), Query Frame = 0


Query: 1    MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
            M FVLSGSTRTIGPEFLRESRSRKGSFLII+SNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1    MKFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61   DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
            DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61   DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121  AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180
            AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS
Sbjct: 121  AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180

Query: 181  GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240
            GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV
Sbjct: 181  GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240

Query: 241  RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIFIQTLIGRVLADDIY 300
            RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSPGNRMIPERIFIQTLIGRVLADDIY
Sbjct: 241  RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300

Query: 301  MGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 360
            MGPRCIG+RNQDIGIGLINRFITFQTQPI IRTPFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 301  MGPRCIGIRNQDIGIGLINRFITFQTQPICIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 360

Query: 361  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKIKFNENLVHPTRTRH 420
            GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKIKFNE+LVHPTRTRH
Sbjct: 361  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420

Query: 421  GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480
            GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE
Sbjct: 421  GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480

Query: 481  RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540
            RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD
Sbjct: 481  RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540

Query: 541  QDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDYSELNPILCTGQSNL 600
            QDQINVHSL VERRYISSLSVNN+KV QKFYG DLSGKNESGIPDYSELNPILC GQSNL
Sbjct: 541  QDQINVHSLSVERRYISSLSVNNEKVRQKFYGLDLSGKNESGIPDYSELNPILCMGQSNL 600

Query: 601  TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIPINGLFRRNSILAFF 660
            TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEL PPSGISIEIPINGLFRRNSILA+F
Sbjct: 601  TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGLFRRNSILAYF 660

Query: 661  DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720
            DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI
Sbjct: 661  DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720

Query: 721  LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 780
            LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMDKI
Sbjct: 721  LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIYFPGEMDKI 780

Query: 781  SRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKL 840
            SRHNGILIPPERVKKNSKKSKK KNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV L
Sbjct: 781  SRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 840

Query: 841  FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDAR 900
            FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIE+AR
Sbjct: 841  FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEAR 900

Query: 901  ASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESDRTNINPFFSIYSKT 960
            ASFVEV+TNGLVRNFLRIDL KSDT+Y+RKRKDPSGSGLIFNNESDRTNINPFFSIYSKT
Sbjct: 901  ASFVEVTTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKT 960

Query: 961  RVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPLIS 1020
            RVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFND KDY+VIKESSKKDPLI 
Sbjct: 961  RVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDGKDYHVIKESSKKDPLIE 1020

Query: 1021 IRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGIFN 1080
            IRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGI N
Sbjct: 1021 IRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGILN 1080

Query: 1081 SDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFENVCIAKNRPHLKSGQ 1140
            SDPCSNIVFNTFNLNWHFLHHNYH NYCEETP  TRISLG FFFENVCIAKNRPHLKSGQ
Sbjct: 1081 SDPCSNIVFNTFNLNWHFLHHNYHPNYCEETP--TRISLGQFFFENVCIAKNRPHLKSGQ 1140

Query: 1141 IIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEKSRSGDITQGLPKVE 1200
            IIIV+VDSVVIR AKPYLATSGATVHRHYGE+LYEGDTLVTFIYEKSRSGDITQGLPKVE
Sbjct: 1141 IIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVE 1200

Query: 1201 QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQSRISLVNKIQKVYR 1260
            QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQSRISLVNKIQKVYR
Sbjct: 1201 QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYR 1260

Query: 1261 SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV 1320
            SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV
Sbjct: 1261 SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV 1320

Query: 1321 LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRE 1380
            LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRE
Sbjct: 1321 LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRE 1380

Query: 1381 LAHRSRQHNNIPLEPPQKKFSRGK 1405
            LAHRSRQHNNIPLE PQKKF  G+
Sbjct: 1381 LAHRSRQHNNIPLETPQKKFFEGE 1402

[Close]

BLAST of Pay0015631 vs. NCBI nr
Match: ASY96752.1 (RNA polymerase beta'' subunit [Cucumis melo var. momordica] >ASY96926.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo] >ASY97274.1 RNA polymerase beta'' subunit [Cucumis melo var. flexuosus] >ASY97013.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo] >ASY97187.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 2719.1 bits (7047), Expect = 0.0e+00
Identity = 1357/1362 (99.63%), Postives = 1358/1362 (99.71%), Query Frame = 0


Query: 43   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
            MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1    MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
            LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61   LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
            PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 282
            EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP
Sbjct: 181  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 240

Query: 283  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 342
            ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW
Sbjct: 241  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 300

Query: 343  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 402
            ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS
Sbjct: 301  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 360

Query: 403  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
            NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
            EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 582
            LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG
Sbjct: 481  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 540

Query: 583  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 642
            IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS
Sbjct: 541  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 600

Query: 643  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 702
            IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY
Sbjct: 601  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 762
            QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI
Sbjct: 661  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 822
            ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF
Sbjct: 721  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 780

Query: 823  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 882
            VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 840

Query: 883  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 942
            LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN
Sbjct: 841  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 900

Query: 943  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 1002
            NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND
Sbjct: 901  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 960

Query: 1003 VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1062
            VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ
Sbjct: 961  VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1020

Query: 1063 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1122
            TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF
Sbjct: 1021 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1080

Query: 1123 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1182
            FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF
Sbjct: 1081 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1140

Query: 1183 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1242
            IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL
Sbjct: 1141 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1200

Query: 1243 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1302
            TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL
Sbjct: 1201 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1260

Query: 1303 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1362
            RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL
Sbjct: 1261 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1320

Query: 1363 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK 1405
            KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPP KK   G+
Sbjct: 1321 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362

[Close]

BLAST of Pay0015631 vs. NCBI nr
Match: YP_004841773.1 (RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA polymerase beta'' subunit [Cucumis melo subsp. agrestis] >ASY96578.1 RNA polymerase beta'' subunit [Cucumis melo var. conomon] >ASY96665.1 RNA polymerase beta'' subunit [Cucumis melo var. makuwa] >ASY96839.1 RNA polymerase beta'' subunit [Cucumis melo var. dudaim] >ASY97100.1 RNA polymerase beta'' subunit [Cucumis melo var. inodorus] >AEM76882.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo])

HSP 1 Score: 2716.8 bits (7041), Expect = 0.0e+00
Identity = 1356/1362 (99.56%), Postives = 1357/1362 (99.63%), Query Frame = 0


Query: 43   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
            MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1    MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
            LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61   LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
            PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121  PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 282
            EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP
Sbjct: 181  EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 240

Query: 283  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 342
            ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW
Sbjct: 241  ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 300

Query: 343  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 402
            ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS
Sbjct: 301  ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASS 360

Query: 403  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
            NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361  NGKIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
            EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421  EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 582
            LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG
Sbjct: 481  LSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESG 540

Query: 583  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 642
            IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS
Sbjct: 541  IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 600

Query: 643  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 702
            IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY
Sbjct: 601  IEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 762
            QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI
Sbjct: 661  QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 822
            ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF
Sbjct: 721  ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 780

Query: 823  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 882
            VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781  VRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 840

Query: 883  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 942
            LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN
Sbjct: 841  LLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFN 900

Query: 943  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 1002
            NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND
Sbjct: 901  NESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFND 960

Query: 1003 VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1062
            VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ
Sbjct: 961  VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQ 1020

Query: 1063 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1122
            TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF
Sbjct: 1021 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHF 1080

Query: 1123 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTF 1182
            FFENVCIAKNRPHLKSGQIIIVEVDSVVIR AKPYLATSGATVHRHYGEMLYEGDTLVTF
Sbjct: 1081 FFENVCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTF 1140

Query: 1183 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1242
            IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL
Sbjct: 1141 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSEL 1200

Query: 1243 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1302
            TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL
Sbjct: 1201 TIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1260

Query: 1303 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1362
            RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL
Sbjct: 1261 RAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGL 1320

Query: 1363 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK 1405
            KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPP KK   G+
Sbjct: 1321 KENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362

[Close]

BLAST of Pay0015631 vs. NCBI nr
Match: QJF46373.1 (RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' subunit [Cucumis melo])

HSP 1 Score: 2710.3 bits (7024), Expect = 0.0e+00
Identity = 1352/1358 (99.56%), Postives = 1353/1358 (99.63%), Query Frame = 0


Query: 47   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 106
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60

Query: 107  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 166
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 167  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 226
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 227  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 286
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240

Query: 287  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 346
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300

Query: 347  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 406
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI
Sbjct: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 360

Query: 407  KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 466
            KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361  KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420

Query: 467  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 526
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 527  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 586
            SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY
Sbjct: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 540

Query: 587  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 646
            SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP
Sbjct: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 600

Query: 647  INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 706
            INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM
Sbjct: 601  INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660

Query: 707  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 766
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720

Query: 767  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 826
            FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780

Query: 827  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 886
            IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840

Query: 887  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 946
            WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD
Sbjct: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 900

Query: 947  RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 1006
            RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 901  RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 960

Query: 1007 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1066
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV
Sbjct: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1020

Query: 1067 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1126
            LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN
Sbjct: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1080

Query: 1127 VCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1186
            VCIAKNRPHLKSGQIIIVEVDSVVIR AKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK
Sbjct: 1081 VCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1140

Query: 1187 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1246
            SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ
Sbjct: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1200

Query: 1247 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1306
            SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER
Sbjct: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260

Query: 1307 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1366
            TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV
Sbjct: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320

Query: 1367 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPQKKFSRGK 1405
            VLGGMIPVGTGFRELAHRSRQHNNIPLEPP KK   G+
Sbjct: 1321 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1358

[Close]

BLAST of Pay0015631 vs. NCBI nr
Match: YP_009525176.1 (RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94570.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94656.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94740.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94825.1 RNA polymerase beta subunit [Hodgsonia macrocarpa])

HSP 1 Score: 2691.8 bits (6976), Expect = 0.0e+00
Identity = 1353/1404 (96.37%), Postives = 1374/1404 (97.86%), Query Frame = 0


Query: 1    MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
            MNFVLSGSTRTIGPEFLRESRSRKGSF II+SNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1    MNFVLSGSTRTIGPEFLRESRSRKGSFPIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61   DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
            DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61   DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121  AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180
            AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS
Sbjct: 121  AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180

Query: 181  GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240
            GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV
Sbjct: 181  GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240

Query: 241  RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIFIQTLIGRVLADDIY 300
            RTSDAGYLTRRLVEVVQHIV+RRTDCGTIRGI VSPGNRMIPERIFIQTLIGRVLADDIY
Sbjct: 241  RTSDAGYLTRRLVEVVQHIVIRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300

Query: 301  MGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 360
            MGPRCIG+RNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 301  MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 360

Query: 361  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKIKFNENLVHPTRTRH 420
            GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKIKFNE+LVHPTRTRH
Sbjct: 361  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420

Query: 421  GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480
            GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE
Sbjct: 421  GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480

Query: 481  RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540
            RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCG SVVPFSLYKD
Sbjct: 481  RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGSSVVPFSLYKD 540

Query: 541  QDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDYSELNPILCTGQSNL 600
            QDQINVHSL VERRYISSLSVNN+KV QKFYGPDLSGKNES IPDYSELNPILCTGQSNL
Sbjct: 541  QDQINVHSLSVERRYISSLSVNNEKVRQKFYGPDLSGKNESRIPDYSELNPILCTGQSNL 600

Query: 601  TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIPINGLFRRNSILAFF 660
            TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEL PPSGISIEIPING+FRR SILA+F
Sbjct: 601  TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRKSILAYF 660

Query: 661  DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720
            DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI
Sbjct: 661  DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720

Query: 721  LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 780
            LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI
Sbjct: 721  LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 780

Query: 781  SRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKL 840
            SRHNGILIPPERVKKNSKKSKK KNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV L
Sbjct: 781  SRHNGILIPPERVKKNSKKSKKFKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 840

Query: 841  FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDAR 900
            FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIE+AR
Sbjct: 841  FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEAR 900

Query: 901  ASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESDRTNINPFFSIYSKT 960
            ASFVEVSTNGLVRNFLRIDL KSDT+Y+RKRKDPSGSGLIFNNESDRTNINPFFSIYSKT
Sbjct: 901  ASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKT 960

Query: 961  RVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPLIS 1020
            RVPQS S+NQGTIRTL NRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSK+DPL  
Sbjct: 961  RVPQSLSKNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKRDPL-E 1020

Query: 1021 IRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGIFN 1080
            IRNSLGPLGAAP+IVNFYSFY LITHN ISLTKYLQLDNLKQTFQVLKYYLMDENGGI N
Sbjct: 1021 IRNSLGPLGAAPKIVNFYSFYPLITHNQISLTKYLQLDNLKQTFQVLKYYLMDENGGISN 1080

Query: 1081 SDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFENVCIAKNRPHLKSGQ 1140
            SDPCSNIVFNTFNLNWHFLHHNYH++Y EETP  TRISLG FFFENVCIAKNRPHLKSGQ
Sbjct: 1081 SDPCSNIVFNTFNLNWHFLHHNYHHSYGEETP--TRISLGQFFFENVCIAKNRPHLKSGQ 1140

Query: 1141 IIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEKSRSGDITQGLPKVE 1200
            IIIV+VDSVVIR AKPYLATSGATVHRHYGE+LYEGDTLVTFIYEKSRSGDITQGLPKVE
Sbjct: 1141 IIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVE 1200

Query: 1201 QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQSRISLVNKIQKVYR 1260
            QVLEVRSIDSISMSLEKRIE WNE IT+ILGIPWGFLIG+ELTIVQSRISLVNKIQKVYR
Sbjct: 1201 QVLEVRSIDSISMSLEKRIEAWNECITKILGIPWGFLIGTELTIVQSRISLVNKIQKVYR 1260

Query: 1261 SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV 1320
            SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV
Sbjct: 1261 SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV 1320

Query: 1321 LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRE 1380
            LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRE
Sbjct: 1321 LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRE 1380

Query: 1381 LAHRSRQHNNIPLEPPQKKFSRGK 1405
            LAHRSRQHNNIPLE P KKF  G+
Sbjct: 1381 LAHRSRQHNNIPLETPPKKFFEGE 1401

[Close]

BLAST of Pay0015631 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 2134.8 bits (5530), Expect = 0.0e+00
Identity = 1087/1359 (79.99%), Postives = 1185/1359 (87.20%), Query Frame = 0


Query: 47   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 106
            MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1    MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 107  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 166
            DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 167  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 226
            MTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 227  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSP--GNRMIPER 286
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSP   NRM+ ER
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER 240

Query: 287  IFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWIC 346
            IFIQTLIGRVLADDIY+G RC+  RNQD+GIGL+NR ITF TQ ISIRTPFTCRSTSWIC
Sbjct: 241  IFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWIC 300

Query: 347  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNG 406
            RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RA  NG
Sbjct: 301  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG 360

Query: 407  KIKFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQ 466
            KIKFNE+LVHPTRTRHGHPAFLCYIDL V IESEDIIH+VTIPPKS LLVQNDQYVESEQ
Sbjct: 361  KIKFNEDLVHPTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ 420

Query: 467  VIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILS 526
            VIAEIR GTYT + KERVRK+IYSDSEGEMHWSTDV HAPEFTYSNVHLLPKTSHLWILS
Sbjct: 421  VIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS 480

Query: 527  GGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIP 586
            GGSCG S++ FS++KDQDQ+N+  L  ER+ ISSLSVNND+V QKF+  D +   + GI 
Sbjct: 481  GGSCGSSLIRFSIHKDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIY 540

Query: 587  DYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIE 646
            DYSELN  L T   NL Y AIFH NSDLLAKRRRN F+I F+S+QE+EKE  P SGIS+E
Sbjct: 541  DYSELNGNLGTSHYNLIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEKEFIPQSGISVE 600

Query: 647  IPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQM 706
            IPING+FRRNSI AFFDDP+YRR SSGI KYGT+   SI++KED+IEYRGV+  K KY  
Sbjct: 601  IPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKY-- 660

Query: 707  QMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIEL 766
            +MKVDRFFFIPEEVHILPESS+IMV+N SIIGV TRLTL+IRS+VGGL+RVEKKKKRIEL
Sbjct: 661  EMKVDRFFFIPEEVHILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIEL 720

Query: 767  KIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVR 826
            KIFSGDIHFP + DKISRH+GILIPP R KKNSK+SKK KNWIYVQ ITPTKKK+FV VR
Sbjct: 721  KIFSGDIHFPDKTDKISRHSGILIPPGRGKKNSKESKKFKNWIYVQRITPTKKKFFVLVR 780

Query: 827  PVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLL 886
            PV  YE+AD INL  LFPQDL +E+DN++LRV NYILYGNGKP RGIS TSIQLVRTCL+
Sbjct: 781  PVATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLV 840

Query: 887  LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNE 946
            LNWD   K+SS+E+ RA FVEVST GL+++F+RI L KS  +Y+RKR +   SGLI    
Sbjct: 841  LNWD---KNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLI---- 900

Query: 947  SDRTNINPFFSIYSKTRV-PQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDV 1006
                ++NPF+SI  K+ +  QS  QN GTIR   NRNKE QSL+ILS+SNC +M  FN V
Sbjct: 901  -SADHMNPFYSISPKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHV 960

Query: 1007 KDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQT 1066
            K +NVI +S KK+ LI+I+NS GPLG A  I NFYSF  L+T+N ISL KY QLDNLK  
Sbjct: 961  KHHNVINQSIKKNTLITIKNSSGPLGTATPISNFYSFLPLLTYNQISLIKYFQLDNLKYI 1020

Query: 1067 FQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFF 1126
            FQ +  YL+DENG I N DP SN+V N F LNW+FLH NYH+NYCEE  T T ISLG FF
Sbjct: 1021 FQKINSYLIDENGIILNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEE--TSTIISLGQFF 1080

Query: 1127 FENVCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTFI 1186
             ENVCIAK  PHLKSGQ++IV+ DS VIR AKPYLAT GA VH HY E+LYEGDTLVTFI
Sbjct: 1081 CENVCIAKKEPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFI 1140

Query: 1187 YEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELT 1246
            YEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKRI+GWN+ ITRILGIPWGFLIG+ELT
Sbjct: 1141 YEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELT 1200

Query: 1247 IVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLR 1306
            IVQSRISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLR
Sbjct: 1201 IVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLR 1260

Query: 1307 AERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLK 1366
            AERTGRALEEAICYRAVLLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLK
Sbjct: 1261 AERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 1320

Query: 1367 ENVVLGGMIPVGTGFRE-LAHRSRQHNNIPLEPPQKKFS 1402
            ENVVLGG+IP GTGF + L H SRQH NI LE   K  +
Sbjct: 1321 ENVVLGGVIPAGTGFNKGLVHCSRQHTNIILEKKTKNLA 1347

[Close]

BLAST of Pay0015631 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 74.7 bits (182), Expect = 6.6e-13
Identity = 70/252 (27.78%), Postives = 109/252 (43.25%), Query Frame = 0


Query: 172  NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------I 231
            N + +M+ SGA+G   N  Q+   +G + L      +M+    LP              I
Sbjct: 936  NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995

Query: 232  QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHI------VVRRTD 291
                  GL   EY   C   R+G+VDTAV+TS +GYL R L++ ++ +       VR  D
Sbjct: 996  SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDAD 1055

Query: 292  CGTIR------GILVSPGN--RMIPERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGL 351
               I+      G+ V   +      E    Q ++ +  ++D+  G         D+ I L
Sbjct: 1056 GSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSY---ISDLPISL 1115

Query: 352  INRFITF-QTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPG 389
                  F +  P++ R          + +L   +S     L + GE VG++A QS+GEP 
Sbjct: 1116 KKGAEKFVEAMPMNERIASKFVRQEELLKLV--KSKFFASLAQPGEPVGVLAAQSVGEPS 1175

[Close]

BLAST of Pay0015631 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-10
Identity = 55/217 (25.35%), Postives = 93/217 (42.86%), Query Frame = 0


Query: 211  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR-----RTD 270
            + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V      R  
Sbjct: 835  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNA 894

Query: 271  CGTIRGILV------------SPGNRMIPERIFIQT-LIGRVLADDIYMGPRCIG----- 330
             G I                   G  +   R+F++        +   Y+    +      
Sbjct: 895  SGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEE 954

Query: 331  --VRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRSTSWICRLCYGRSP 390
              VR+       D  +  +  F++          Q +   +  T +      ++C  R  
Sbjct: 955  ELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR-- 1014

[Close]

BLAST of Pay0015631 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-10
Identity = 55/217 (25.35%), Postives = 93/217 (42.86%), Query Frame = 0


Query: 211  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR-----RTD 270
            + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V      R  
Sbjct: 852  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNA 911

Query: 271  CGTIRGILV------------SPGNRMIPERIFIQT-LIGRVLADDIYMGPRCIG----- 330
             G I                   G  +   R+F++        +   Y+    +      
Sbjct: 912  SGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEE 971

Query: 331  --VRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRSTSWICRLCYGRSP 390
              VR+       D  +  +  F++          Q +   +  T +      ++C  R  
Sbjct: 972  ELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR-- 1031

[Close]

BLAST of Pay0015631 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 51.6 bits (122), Expect = 5.9e-06
Identity = 24/63 (38.10%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 211 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 270
           ++++   GL+  E+     G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+    GT+R
Sbjct: 819 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 878

Query: 271 GIL 274
             L
Sbjct: 879 NSL 879

HSP 2 Score: 51.6 bits (122), Expect = 5.9e-06
Identity = 27/71 (38.03%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1313 EAICYRAVLLGITKASLNTQSF--ISEASFQETARVLAKAALRGRIDWLRGLKENVVLGG 1372
            + + YR  L+ IT+  +N      +   SF+ET  +L  AA     D LRG+ EN++LG 
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453

Query: 1373 MIPVGTGFREL 1382
            + P+GTG  EL
Sbjct: 1454 LAPIGTGDCEL 1464

HSP 3 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 357  LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 390
            LV  GE +G +A QSIGEP TQ+TL TFH  GV
Sbjct: 1077 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1109

The following BLAST results are available for this feature:

BLAST of Pay0015631 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	0.0e+00	97.94	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
Q0ZJ30	0.0e+00	84.72	DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 P...	[more]
B1NWE0	0.0e+00	84.10	DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2...	[more]
Q49L08	0.0e+00	83.59	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
B1A925	0.0e+00	84.12	DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=...	[more]

BLAST of Pay0015631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7T3QNJ7	0.0e+00	97.22	RNA polymerase beta'' subunit OS=Benincasa hispida OX=102211 GN=rpoC2 PE=4 SV=1	[more]
A0A249RZW9	0.0e+00	99.63	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX...	[more]
A0A286NFX2	0.0e+00	99.63	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. flexuosus OX=112...	[more]
A0A249RYP9	0.0e+00	99.63	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. momordica OX=203...	[more]
A0A249RXP5	0.0e+00	99.56	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=21...	[more]

BLAST of Pay0015631 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010131084.1	0.0e+00	97.22	RNA polymerase beta'' subunit [Benincasa hispida] >QPZ75731.1 RNA polymerase bet...	[more]
ASY96752.1	0.0e+00	99.63	RNA polymerase beta'' subunit [Cucumis melo var. momordica] >ASY96926.1 RNA poly...	[more]
YP_004841773.1	0.0e+00	99.56	RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA pol...	[more]
QJF46373.1	0.0e+00	99.56	RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' s...	[more]
YP_009525176.1	0.0e+00	96.37	RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94570.1 RNA polymerase be...	[more]

BLAST of Pay0015631 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	0.0e+00	79.99	DNA-directed RNA polymerase family protein	[more]
AT3G57660.1	6.6e-13	27.78	nuclear RNA polymerase A1	[more]
AT5G60040.1	5.2e-10	25.35	nuclear RNA polymerase C1	[more]
AT5G60040.2	5.2e-10	25.35	nuclear RNA polymerase C1	[more]
AT4G35800.1	5.9e-06	38.10	RNA polymerase II large subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 141..203 e-value: 5.1E-10 score: 39.3
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 1243..1330 e-value: 3.6E-7 score: 29.9
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 218..411 e-value: 2.1E-39 score: 135.5
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 105..242 e-value: 9.4E-47 score: 160.6
None	No IPR available	GENE3D	1.10.150.390		coord: 1331..1390 e-value: 9.3E-24 score: 84.7
None	No IPR available	GENE3D	1.10.1790.20		coord: 1193..1330 e-value: 2.8E-34 score: 119.7
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 47..1395
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 47..1395
None	No IPR available	CDD	cd02655	RNAP_beta'_C	coord: 1190..1378 e-value: 4.00526E-72 score: 237.426
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 53..1388
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 28..104 e-value: 4.7E-11 score: 45.0
IPR012756	DNA-directed RNA polymerase, subunit beta''	TIGRFAM	TIGR02388	TIGR02388	coord: 54..552 e-value: 1.2E-142 score: 474.7
IPR012756	DNA-directed RNA polymerase, subunit beta''	HAMAP	MF_01324	RNApol_bact_RpoC2	coord: 52..1397 score: 12.302845

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0015631.1	Pay0015631.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding