Pay0015578 (gene) Melon (Payzawat) v1

Overview


Name	Pay0015578
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Glycine rich RNA binding protein
Location	chr08: 29155773 .. 29158109 (-)
RNA-Seq Expression	Pay0015578
Synteny	Pay0015578

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAACATTTGAACAAAGAAGTAAAGGGCGACAGTTGTGTAAGCCAAAACTCAAACCCTAAACCCTAAAAAACTCTCCATCGCAGCGGTCTACCCGTTTGCATCGGCCGGTTGAATCATATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAGTGGATCTTCTCCTTCTTCTTCCTCTTCCATTCTCCGATCCCAGTGGAATGCCGTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTAAGCCTCGCAGAATCATCTTGTGCTACGCCTTTCTTCTTATTTTGATTATTGAGCATGATTCGGAAATTTGGTATTATGATCAATTTTTTGTTTGGATTATGAGAAACTTCCGGTGTTGTTGCTCACCCTTCACTTCTTACACTTGAACAATTATTTTCAAAGAACTAAATGGGGGATCTACTTAATCAACTATGCTCTGTTCTGTTACTTTTATCCCATTTGTTTATGGTGTTTGTGTTTCTATTTACATTTATGAAATTGCTTCAGTCTTCAGTAAGTGGTAGGGCTTGTTCGGGTGTAGGACTTTAGAAAATTATTCCTATCCTTATCATTTATCAATCATGCAGGATGCTTGATAGCTTAAGCAACTAAGAAAGAATCATCATAGTTAGCTTGGTAGTAAATAGGGGCATGACCTTCGTAAAGGGCTAAGAAGTCTGCAGTCAGGTGCCTAAAATTTAATATCCTACAAGTTATATTGATATCCAAATGTTGTAAGGTTAGATGGATTGTCCGGCAAGAGTAGTCAAAATGAACATAAGCTAGTCTAAATACTTAGAGAGATATATATATATTAAAAAAATTGAGGTTGTATAACTTGTAATGTTGTAGGAAAGCTAATTCATTTCTTATGCAACACAATATTCCGTTTGCATTCGAAGGTCTGCCGTTTGATTGACAAACCTTCCAAAGAATGAAGGGAGTAGGTATACAGAAATTCCCCTCACCCCCCCCCCCCCCCCCACACACTACACCACACCACTACACACAACAAAGAAGAAGAAAAAGAAGAGAAGAAAAGAAAAGAAGGGAGAGAACCTCTCATTAGAAAAAGTTCACGAGACAGCACCCTCAATGCCTACATCTTCAATCCTTTATAAATCCTTCATTTGTTCTTTCAGTAAGAAACACCTCTTGAGTATCAATTAATGAAGGGGTAGTGGTATTAGAAGCCCATATCTTCTCTTTTTTTTTTACAAGTATGGGTAGTGTTGTGTATAATTCGAATATCATAAAGATTTCCATATATGTCAAGTCCCCTTAGTCGAGTTCTAGATTTGCCAATATACCCTGAGAAGTAGACAGAGTTACGATGCACATTTAGAAAATTCTAGGAATTTGTCGTTGATAGATAAAATGGATTCAAAGACCAAGTCAACATATCCATTATAAATACGGTCGAACAAATATGATTTTTTTCATAATCTAATATTCTTTTACGAACTCAAGAGTAGTAGAGTATAGAAGTACATAACAAATTTAGATTGGATATGCTCGGTGAGATTTTCACTCCTATAAAATGAACAGGTCTTTCGAGATTAACAACAGATGAGAAGCTCCGAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGATGGTATAGCACTCTCTCCCTCTCTCCAATTTACAAATCTATGAACATTTGTTCCAGAGTGCAACATCTTGACATTGCCTCAACATTTGTACAGCAAAGGTTGTAACTGATAGGGCGACGGGAAGATCGAAGGGATTCGCCTTCGTAACCTACAGTACAATAGAAGAGGCTGAGAGAGCTAGACAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCACAGCCTCAATCCGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGATTGCTTGCAGAATTTTTGAAATCTCATAGCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTCTGATGTATGTTCTTCATCCATGGGTACTATAGATAAAATTCATGAACACCACTCTCAAGGTGGCCTCAAAACTGCCAGAAATTGGGCATTATTTTGTTATAGATATGGATTTGGATTCAGAAAAGTATTTACTTACCTTAGGTTTATTATTCATATTTTAATTCTTAACTTCTTATATGTATTTTGTTTTAGTTTTTCTATTTAATAATTATTCTATTTTGATATCCATCTTTGGTATTTATGTTAGTATCTTAGACTAGTATTCAAATGTAATAACATACCCAATATTTGTCAATCAAACTATTAGTCTCC

mRNA sequence

TGAAACATTTGAACAAAGAAGTAAAGGGCGACAGTTGTGTAAGCCAAAACTCAAACCCTAAACCCTAAAAAACTCTCCATCGCAGCGGTCTACCCGTTTGCATCGGCCGGTTGAATCATATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAGTGGATCTTCTCCTTCTTCTTCCTCTTCCATTCTCCGATCCCAGTGGAATGCCGTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTCTTTCGAGATTAACAACAGATGAGAAGCTCCGAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGATGCAAAGGTTGTAACTGATAGGGCGACGGGAAGATCGAAGGGATTCGCCTTCGTAACCTACAGTACAATAGAAGAGGCTGAGAGAGCTAGACAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCACAGCCTCAATCCGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGATTGCTTGCAGAATTTTTGAAATCTCATAGCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTCTGATGTATGTTCTTCATCCATGGGTACTATAGATAAAATTCATGAACACCACTCTCAAGGTGGCCTCAAAACTGCCAGAAATTGGGCATTATTTTGTTATAGATATGGATTTGGATTCAGAAAAGTATTTACTTACCTTAGGTTTATTATTCATATTTTAATTCTTAACTTCTTATATGTATTTTGTTTTAGTTTTTCTATTTAATAATTATTCTATTTTGATATCCATCTTTGGTATTTATGTTAGTATCTTAGACTAGTATTCAAATGTAATAACATACCCAATATTTGTCAATCAAACTATTAGTCTCC

Coding sequence (CDS)

ATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAGTGGATCTTCTCCTTCTTCTTCCTCTTCCATTCTCCGATCCCAGTGGAATGCCGTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTCTTTCGAGATTAACAACAGATGAGAAGCTCCGAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGATGCAAAGGTTGTAACTGATAGGGCGACGGGAAGATCGAAGGGATTCGCCTTCGTAACCTACAGTACAATAGAAGAGGCTGAGAGAGCTAGACAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCACAGCCTCAATCCGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGA

Protein sequence

MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

Homology

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BLAST of Pay0015578 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-22
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 38  SPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERAR 97
           S  LF+SGLS+ TT E LR AF+ FG++ DAKVVTDR +G SKGF FV Y+T+E++ +  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 98  QEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 132
             M+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of Pay0015578 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-16
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 33  SSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEE 92
           S  + + KLFI+GLS  T+++ LR AF  FG+LV+ K++ D+ + RSKG+AF+ Y+T E 
Sbjct: 276 SPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335

Query: 93  AERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGI 136
           A  A +EMN K ++GW+I VD AK    +P  Q +S+ S FG+
Sbjct: 336 AGTALKEMNGKIINGWMIVVDVAK---TKPFRQNRSQPS-FGL 374

[Close]

BLAST of Pay0015578 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-16
Identity = 56/129 (43.41%), Postives = 72/129 (55.81%), Query Frame = 0


Query: 12  SGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVV 71
           S SSP SSSS  ++              KL++SGLS  TT++ LR+ F  FG L+   +V
Sbjct: 64  SSSSPPSSSSGPKT--------------KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV 123

Query: 72  TDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP-------RPPP 131
            D+   R KGFAF+ Y T EEA +A Q M+ KFLDG VIFV+ AK R         R  P
Sbjct: 124 MDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFP 178

Query: 132 QPQSETSEF 134
           +PQS+   F
Sbjct: 184 KPQSKPRTF 178

[Close]

BLAST of Pay0015578 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.2e-16
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 40  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQE 99
           KLFI GLS  TT++ L EAFS  GQ+V+A++V DR + RSKGF FVT+++ +EA++A  E
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 100 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 127
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of Pay0015578 vs. ExPASy Swiss-Prot
Match: Q9FZ84 (Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG6 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-15
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 35  TLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAE 94
           +LT  K+F+ GLS  T  E L+EAF SFG++VDA VV DR +G S+GF FVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 95  RARQEMNAKFLDGWVIFVDPA 116
            A Q M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

[Close]

BLAST of Pay0015578 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.7e-73
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60
           MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60

Query: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 146
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Pay0015578 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.5e-65
Identity = 126/145 (86.90%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60
           MAF S+VRRVL+GSS S++SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAFS
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTY+TIE+AE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 146
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Pay0015578 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.0e-62
Identity = 128/148 (86.49%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60
           MAFFSTVRRVL+GS  SSSSS+LRSQW + RLSSTLTSPKLFISGLSRLTTDEKL+EAF+
Sbjct: 1   MAFFSTVRRVLNGS--SSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60

Query: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQ---SETSEFGIRTNKTIGWCG 146
           RPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Pay0015578 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62
Identity = 130/147 (88.44%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60
           MAFFSTVRRVL+GS  SSSSS+LRSQW   RLSSTLTSPKLFISGLSRLTTDEKL+EAF+
Sbjct: 1   MAFFSTVRRVLNGS--SSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60

Query: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 R-PPPQPQS-ETSEFGIRTNKTIGWCG 146
           R PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Pay0015578 vs. ExPASy TrEMBL
Match: A0A2I4DKH7 (organelle RRM domain-containing protein 2, mitochondrial OS=Juglans regia OX=51240 GN=LOC108981026 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.9e-56
Identity = 112/145 (77.24%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60
           MAF S++RR+LSGS  S++SSIL SQ+ ++RL++TLTSPKLFISGLSRLTTDEKL+EAFS
Sbjct: 1   MAFVSSIRRLLSGS--STASSILHSQYASIRLNTTLTSPKLFISGLSRLTTDEKLKEAFS 60

Query: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120
            FGQL+DAKV+ DRATGRSKGF FVTY +IEEAE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  PFGQLLDAKVIADRATGRSKGFGFVTYKSIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 146
           RPPPQP  E+S+ G RTNKT+GWCG
Sbjct: 121 RPPPQPLQESSDMGFRTNKTVGWCG 143

[Close]

BLAST of Pay0015578 vs. NCBI nr
Match: XP_008447620.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 3.5e-73
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60
           MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60

Query: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 146
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Pay0015578 vs. NCBI nr
Match: XP_031739912.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8649523.1 hypothetical protein Csa_018111 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAFFSTVRRVLSG-SSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVL+G SS SSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLVDAKVVTDRATGRSKGFAFVTYSTI+EAE+AR+EMNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Pay0015578 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 126/145 (86.90%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60
           MAF S+VRRVL+GSS S++SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAFS
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTY+TIE+AE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 146
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Pay0015578 vs. NCBI nr
Match: XP_038881167.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 251.1 bits (640), Expect = 5.7e-63
Identity = 129/148 (87.16%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60
           MAFFSTVRRVL+G   SSSSSILRSQW AVRLSSTLTSP+LFISGLSRLTTDEKL+EAFS
Sbjct: 1   MAFFSTVRRVLNG---SSSSSILRSQWTAVRLSSTLTSPRLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAK---P 120
           SFGQLV+AKV+TDR TGRSKGF FV+Y+TIEEAE+AR+EMNAKFLDGWVIFVDPAK   P
Sbjct: 61  SFGQLVEAKVITDRVTGRSKGFGFVSYNTIEEAEKAREEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 REPRPPPQPQSETSEFGIRTNKTIGWCG 146
           REPRPPPQPQ ETSEFGIRTNKTIGWCG
Sbjct: 121 REPRPPPQPQPETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Pay0015578 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 249.2 bits (635), Expect = 2.2e-62
Identity = 128/148 (86.49%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60
           MAFFSTVRRVL+GS  SSSSS+LRSQW + RLSSTLTSPKLFISGLSRLTTDEKL+EAF+
Sbjct: 1   MAFFSTVRRVLNGS--SSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60

Query: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQ---SETSEFGIRTNKTIGWCG 146
           RPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Pay0015578 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 189.5 bits (480), Expect = 1.9e-48
Identity = 99/146 (67.81%), Postives = 119/146 (81.51%), Query Frame = 0


Query: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60
           MAF S+ RR+++G     SSS+L S    VR  STLTSP+LF+SGLSRLTT+EKL++AF+
Sbjct: 1   MAFVSSFRRLVAG-----SSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFA 60

Query: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVDA+V+TDR +GRSKGF FVTY+TIE+AE+A+ EMNAKFLDGWVIFVDPA+PREP
Sbjct: 61  SFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 120

Query: 121 RPPPQ--PQSETSEFGIRTNKTIGWC 145
           R P Q  P   +SE G  TNKTIGWC
Sbjct: 121 RRPLQQEPLRPSSESGFTTNKTIGWC 141

[Close]

BLAST of Pay0015578 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-23
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 38  SPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERAR 97
           S  LF+SGLS+ TT E LR AF+ FG++ DAKVVTDR +G SKGF FV Y+T+E++ +  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 98  QEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 132
             M+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of Pay0015578 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-17
Identity = 56/129 (43.41%), Postives = 72/129 (55.81%), Query Frame = 0


Query: 12  SGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVV 71
           S SSP SSSS  ++              KL++SGLS  TT++ LR+ F  FG L+   +V
Sbjct: 64  SSSSPPSSSSGPKT--------------KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV 123

Query: 72  TDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP-------RPPP 131
            D+   R KGFAF+ Y T EEA +A Q M+ KFLDG VIFV+ AK R         R  P
Sbjct: 124 MDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFP 178

Query: 132 QPQSETSEF 134
           +PQS+   F
Sbjct: 184 KPQSKPRTF 178

[Close]

BLAST of Pay0015578 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-17
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 33  SSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEE 92
           S  + + KLFI+GLS  T+++ LR AF  FG+LV+ K++ D+ + RSKG+AF+ Y+T E 
Sbjct: 276 SPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335

Query: 93  AERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGI 136
           A  A +EMN K ++GW+I VD AK    +P  Q +S+ S FG+
Sbjct: 336 AGTALKEMNGKIINGWMIVVDVAK---TKPFRQNRSQPS-FGL 374

[Close]

BLAST of Pay0015578 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 84.7 bits (208), Expect = 6.5e-17
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 40  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQE 99
           KLFI GLS  TT++ L EAFS  GQ+V+A++V DR + RSKGF FVT+++ +EA++A  E
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 100 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 127
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

The following BLAST results are available for this feature:

BLAST of Pay0015578 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	2.3e-22	55.32	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q8L440	3.2e-16	45.63	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FX45	3.2e-16	43.41	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	9.2e-16	47.42	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FZ84	1.2e-15	55.56	Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Pay0015578 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BHV3	1.7e-73	100.00	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1CQ59	8.5e-65	86.90	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A6J1I6S8	1.0e-62	86.49	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A6J1HDN1	1.8e-62	88.44	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A2I4DKH7	1.9e-56	77.24	organelle RRM domain-containing protein 2, mitochondrial OS=Juglans regia OX=512...	[more]

BLAST of Pay0015578 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447620.1	3.5e-73	100.00	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
XP_031739912.1	1.8e-69	95.89	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8...	[more]
XP_022143719.1	1.8e-64	86.90	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_038881167.1	5.7e-63	87.16	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
XP_022972736.1	2.2e-62	86.49	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]

BLAST of Pay0015578 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	1.9e-48	67.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.6e-23	55.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	2.3e-17	43.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	2.3e-17	45.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	6.5e-17	47.42	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 40..113 e-value: 7.8E-27 score: 105.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 41..107 e-value: 3.9E-21 score: 74.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 39..117 score: 18.73439
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 24..140 e-value: 5.9E-29 score: 102.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..145
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..145
None	No IPR available	PANTHER	PTHR15241:SF282	GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIAL	coord: 1..145
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 38..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0015578.1	Pay0015578.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding